RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 ATP5HO75947 161 aa-0.1□□□□□ -2.43
VPS50-217ENST00000485140 HIST1H2BJP06899 126 aa-0.1□□□□□ -2.43
VPS50-217ENST00000485140 CST2P09228 141 aa-0.1□□□□□ -2.43
VPS50-217ENST00000485140 PDE6GP18545 87 aa-0.1□□□□□ -2.43
VPS50-217ENST00000485140 ARPP19P56211 112 aa-0.1□□□□□ -2.43
VPS50-217ENST00000485140 MIR22HGQ0VDD5 57 aa-0.1□□□□□ -2.43
VPS50-217ENST00000485140 VMA21Q3ZAQ7 101 aa-0.1□□□□□ -2.43
VPS50-217ENST00000485140 LYG2Q86SG7 212 aa-0.1□□□□□ -2.43
VPS50-217ENST00000485140 PRAP1Q96NZ9 151 aa-0.1□□□□□ -2.43
VPS50-217ENST00000485140 PHB2Q99623 299 aa-0.1□□□□□ -2.43
VPS50-217ENST00000485140 A6NN06 94 aa-0.11□□□□□ -2.43
VPS50-217ENST00000485140 G3V2T6 193 aa-0.11□□□□□ -2.43
VPS50-217ENST00000485140 SPINK1P00995 79 aa-0.11□□□□□ -2.43
VPS50-217ENST00000485140 CXCL1P09341 107 aa-0.11□□□□□ -2.43
VPS50-217ENST00000485140 IDO1P14902 403 aa-0.11□□□□□ -2.43
VPS50-217ENST00000485140 DIAPH2-AS1Q14236 149 aa-0.11□□□□□ -2.43
VPS50-217ENST00000485140 AP1S3Q96PC3 154 aa-0.11□□□□□ -2.43
VPS50-217ENST00000485140 LIMD2Q9BT23 127 aa-0.11□□□□□ -2.43
VPS50-217ENST00000485140 PYCARDQ9ULZ3 195 aa-0.11□□□□□ -2.43
VPS50-217ENST00000485140 UHRF1BP1Q6BDS2 1440 aa-0.12□□□□□ -2.43
VPS50-217ENST00000485140 MIA2Q96PC5 1412 aa-0.12□□□□□ -2.43
VPS50-217ENST00000485140 ABCA12Q86UK0 2595 aa-0.12□□□□□ -2.43
VPS50-217ENST00000485140 RIIAD1A6NNX1 92 aa-0.12□□□□□ -2.43
VPS50-217ENST00000485140 H7C1C5 153 aa-0.12□□□□□ -2.43
VPS50-217ENST00000485140 IGHV3-30P01768 117 aa-0.12□□□□□ -2.43
VPS50-217ENST00000485140 C1QBP02746 253 aa-0.12□□□□□ -2.43
VPS50-217ENST00000485140 TRGC2P03986 189 aa-0.12□□□□□ -2.43
VPS50-217ENST00000485140 IGHV3-30-5P0DP03 117 aa-0.12□□□□□ -2.43
VPS50-217ENST00000485140 OGNP20774 298 aaKnown RBP-0.12□□□□□ -2.43
VPS50-217ENST00000485140 LCN6P62502 163 aa-0.12□□□□□ -2.43
VPS50-217ENST00000485140 XAF1Q6GPH4 301 aa-0.12□□□□□ -2.43
VPS50-217ENST00000485140 FAM216BQ8N7L0 139 aa-0.12□□□□□ -2.43
VPS50-217ENST00000485140 ARMC1Q9NVT9 282 aa-0.12□□□□□ -2.43
VPS50-217ENST00000485140 NAT8BQ9UHF3 227 aa-0.12□□□□□ -2.43
VPS50-217ENST00000485140 TRPM1Q7Z4N2 1603 aa-0.13□□□□□ -2.43
VPS50-217ENST00000485140 LY6G6CO95867 125 aa-0.13□□□□□ -2.43
VPS50-217ENST00000485140 CYBAP13498 195 aa-0.13□□□□□ -2.43
VPS50-217ENST00000485140 RPS3P23396 243 aaKnown RBP eCLIP-0.13□□□□□ -2.43
VPS50-217ENST00000485140 REEP5Q00765 189 aa-0.13□□□□□ -2.43
VPS50-217ENST00000485140 AKR1C8PQ5T2L2 129 aa-0.13□□□□□ -2.43
VPS50-217ENST00000485140 CROCCP2Q86T23 111 aa-0.13□□□□□ -2.43
VPS50-217ENST00000485140 NEK7Q8TDX7 302 aa-0.13□□□□□ -2.43
VPS50-217ENST00000485140 MALSU1Q96EH3 234 aa-0.13□□□□□ -2.43
VPS50-217ENST00000485140 EFCAB11Q9BUY7 163 aa-0.13□□□□□ -2.43
VPS50-217ENST00000485140 PBDC1Q9BVG4 233 aa-0.13□□□□□ -2.43
VPS50-217ENST00000485140 SSR3Q9UNL2 185 aa-0.13□□□□□ -2.43
VPS50-217ENST00000485140 TPRKBQ9Y3C4 175 aa-0.13□□□□□ -2.43
VPS50-217ENST00000485140 NISCHQ9Y2I1 1504 aa-0.13□□□□□ -2.43
VPS50-217ENST00000485140 ANK2Q01484 3957 aa-0.14□□□□□ -2.43
VPS50-217ENST00000485140 CAMSAP2Q08AD1 1489 aa-0.14□□□□□ -2.43
VPS50-217ENST00000485140 K7ERJ3 54 aa-0.14□□□□□ -2.43
VPS50-217ENST00000485140 EVI2AP22794 236 aa-0.14□□□□□ -2.43
VPS50-217ENST00000485140 PHBP35232 272 aa-0.14□□□□□ -2.43
VPS50-217ENST00000485140 RPL35P42766 123 aaKnown RBP-0.14□□□□□ -2.43
VPS50-217ENST00000485140 INSL3P51460 131 aa-0.14□□□□□ -2.43
VPS50-217ENST00000485140 RPL37P61927 97 aaKnown RBP-0.14□□□□□ -2.43
VPS50-217ENST00000485140 HBBP68871 147 aa-0.14□□□□□ -2.43
VPS50-217ENST00000485140 TMED2Q15363 201 aa-0.14□□□□□ -2.43
VPS50-217ENST00000485140 NEDD8Q15843 81 aa-0.14□□□□□ -2.43
VPS50-217ENST00000485140 Q5BKY6 102 aa-0.14□□□□□ -2.43
VPS50-217ENST00000485140 ANGPTL5Q86XS5 388 aa-0.14□□□□□ -2.43
VPS50-217ENST00000485140 SREK1IP1Q8N9Q2 155 aaPredicted RBP-0.14□□□□□ -2.43
VPS50-217ENST00000485140 MCEEQ96PE7 176 aa-0.14□□□□□ -2.43
VPS50-217ENST00000485140 LYRM2Q9NU23 88 aaPredicted RBP-0.14□□□□□ -2.43
VPS50-217ENST00000485140 PRNDQ9UKY0 176 aa-0.14□□□□□ -2.43
VPS50-217ENST00000485140 NUP210LQ5VU65 1888 aa-0.14□□□□□ -2.43
VPS50-217ENST00000485140 UNC79Q9P2D8 2635 aa-0.15□□□□□ -2.43
VPS50-217ENST00000485140 PIAS1O75925 651 aa-0.15□□□□□ -2.43
VPS50-217ENST00000485140 CST7O76096 145 aa-0.15□□□□□ -2.43
VPS50-217ENST00000485140 PPP1R2P41236 205 aa-0.15□□□□□ -2.43
VPS50-217ENST00000485140 ERVS71-1P61550 626 aa-0.15□□□□□ -2.43
VPS50-217ENST00000485140 GNG5P63218 68 aa-0.15□□□□□ -2.43
VPS50-217ENST00000485140 MRPS25P82663 173 aaKnown RBP-0.15□□□□□ -2.43
VPS50-217ENST00000485140 MRPS36P82909 103 aaKnown RBP-0.15□□□□□ -2.43
VPS50-217ENST00000485140 MSMO1Q15800 293 aa-0.15□□□□□ -2.43
VPS50-217ENST00000485140 GLYATL3Q5SZD4 288 aa-0.15□□□□□ -2.43
VPS50-217ENST00000485140 C1orf140Q5VVS0 124 aa-0.15□□□□□ -2.43
VPS50-217ENST00000485140 PLEKHB2Q96CS7 222 aa-0.15□□□□□ -2.43
VPS50-217ENST00000485140 OR4C12Q96R67 309 aa-0.15□□□□□ -2.43
VPS50-217ENST00000485140 GPX7Q96SL4 187 aaPredicted RBP-0.15□□□□□ -2.43
VPS50-217ENST00000485140 PAIP2Q9BPZ3 127 aaKnown RBP-0.15□□□□□ -2.43
VPS50-217ENST00000485140 OR2H1Q9GZK4 316 aa-0.15□□□□□ -2.43
VPS50-217ENST00000485140 TTC28Q96AY4 2481 aa-0.15□□□□□ -2.43
VPS50-217ENST00000485140 HIVEP3Q5T1R4 2406 aa-0.16□□□□□ -2.43
VPS50-217ENST00000485140 PIK3C2AO00443 1686 aa-0.16□□□□□ -2.44
VPS50-217ENST00000485140 ATG12O94817 140 aa-0.16□□□□□ -2.44
VPS50-217ENST00000485140 MT-ND6P03923 174 aa-0.16□□□□□ -2.44
VPS50-217ENST00000485140 GYPBP06028 91 aa-0.16□□□□□ -2.44
VPS50-217ENST00000485140 CTXN2P0C2S0 81 aa-0.16□□□□□ -2.44
VPS50-217ENST00000485140 SNRPD3P62318 126 aaKnown RBP-0.16□□□□□ -2.44
VPS50-217ENST00000485140 SNCBQ16143 134 aa-0.16□□□□□ -2.44
VPS50-217ENST00000485140 FKBP1CQ5VVH2 108 aa-0.16□□□□□ -2.44
VPS50-217ENST00000485140 HACD4Q5VWC8 232 aa-0.16□□□□□ -2.44
VPS50-217ENST00000485140 PHF5AQ7RTV0 110 aaKnown RBP-0.16□□□□□ -2.44
VPS50-217ENST00000485140 LINC00269Q8N2A0 174 aa-0.16□□□□□ -2.44
VPS50-217ENST00000485140 OR5AK2Q8NH90 309 aa-0.16□□□□□ -2.44
VPS50-217ENST00000485140 CEP19Q96LK0 163 aa-0.16□□□□□ -2.44
VPS50-217ENST00000485140 SH3BGRL3Q9H299 93 aa-0.16□□□□□ -2.44
VPS50-217ENST00000485140 CACNA1CQ13936 2221 aa-0.16□□□□□ -2.44
VPS50-217ENST00000485140 ADGRL3Q9HAR2 1447 aa-0.16□□□□□ -2.44
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms