RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 NKX6-2Q9C056 277 aaPredicted RBP11.7□□□□□ -0.54
USP40-206ENST00000443711 TUBA4BQ9H853 241 aa11.7□□□□□ -0.54
USP40-206ENST00000443711 SRD5A3Q9H8P0 318 aa11.7□□□□□ -0.54
USP40-206ENST00000443711 ARL2-SNX15V9GYD0 113 aa11.7□□□□□ -0.54
USP40-206ENST00000443711 AGRNO00468 2067 aa11.69□□□□□ -0.54
USP40-206ENST00000443711 FAM74A7A6NL05 159 aa11.69□□□□□ -0.54
USP40-206ENST00000443711 KNCNA6PVL3 124 aa11.69□□□□□ -0.54
USP40-206ENST00000443711 M0R3E3 92 aa11.69□□□□□ -0.54
USP40-206ENST00000443711 PAGE4O60829 102 aa11.69□□□□□ -0.54
USP40-206ENST00000443711 IFNA1P01562 189 aa11.69□□□□□ -0.54
USP40-206ENST00000443711 SUMO1P63165 101 aaKnown RBP11.69□□□□□ -0.54
USP40-206ENST00000443711 IFITM2Q01629 132 aa11.69□□□□□ -0.54
USP40-206ENST00000443711 PMS2P11Q13670 270 aa11.69□□□□□ -0.54
USP40-206ENST00000443711 ACTL10Q5JWF8 245 aa11.69□□□□□ -0.54
USP40-206ENST00000443711 ARL6IP6Q8N6S5 226 aa11.69□□□□□ -0.54
USP40-206ENST00000443711 LYPD6BQ8NI32 183 aa11.69□□□□□ -0.54
USP40-206ENST00000443711 SAV1Q9H4B6 383 aaPredicted RBP11.69□□□□□ -0.54
USP40-206ENST00000443711 MANBALQ9NQG1 85 aa11.69□□□□□ -0.54
USP40-206ENST00000443711 GNG13Q9P2W3 67 aa11.69□□□□□ -0.54
USP40-206ENST00000443711 YTHDF2Q9Y5A9 579 aaKnown RBP11.69□□□□□ -0.54
USP40-206ENST00000443711 A0A0J9YX75 114 aa11.68□□□□□ -0.54
USP40-206ENST00000443711 K7EIL1 84 aa11.68□□□□□ -0.54
USP40-206ENST00000443711 SLC25A5P05141 298 aaKnown RBP11.68□□□□□ -0.54
USP40-206ENST00000443711 DEFB1P60022 68 aa11.68□□□□□ -0.54
USP40-206ENST00000443711 RAB14P61106 215 aa11.68□□□□□ -0.54
USP40-206ENST00000443711 CST9LP1Q5W188 147 aa11.68□□□□□ -0.54
USP40-206ENST00000443711 STHQ8IWL8 128 aa11.68□□□□□ -0.54
USP40-206ENST00000443711 C5orf17Q8NAS9 161 aa11.68□□□□□ -0.54
USP40-206ENST00000443711 CITED4Q96RK1 184 aa11.68□□□□□ -0.54
USP40-206ENST00000443711 A8MZ25 164 aa11.67□□□□□ -0.54
USP40-206ENST00000443711 GGTLC3B5MD39 225 aa11.67□□□□□ -0.54
USP40-206ENST00000443711 PRAC2D3DTV9 90 aa11.67□□□□□ -0.54
USP40-206ENST00000443711 F6UB75 175 aa11.67□□□□□ -0.54
USP40-206ENST00000443711 DUSP14O95147 198 aaKnown RBP11.67□□□□□ -0.54
USP40-206ENST00000443711 IGHV4-30-4P0DP06 118 aa11.67□□□□□ -0.54
USP40-206ENST00000443711 HLA-DRB4P13762 266 aa11.67□□□□□ -0.54
USP40-206ENST00000443711 OR8A1Q8NGG7 326 aa11.67□□□□□ -0.54
USP40-206ENST00000443711 OR10J6PQ8NGY7 276 aa11.67□□□□□ -0.54
USP40-206ENST00000443711 HLA-DRB4X5D2U9 266 aa11.67□□□□□ -0.54
USP40-206ENST00000443711 DIRC3C9JPN6 131 aa11.66□□□□□ -0.54
USP40-206ENST00000443711 H3BMM0 161 aa11.66□□□□□ -0.54
USP40-206ENST00000443711 NMBP08949 121 aa11.66□□□□□ -0.54
USP40-206ENST00000443711 DEFB121Q5J5C9 76 aa11.66□□□□□ -0.54
USP40-206ENST00000443711 GDF5OSQ5U4N7 250 aa11.66□□□□□ -0.54
USP40-206ENST00000443711 PCNPQ8WW12 178 aaKnown RBP11.66□□□□□ -0.54
USP40-206ENST00000443711 EPDR1Q9UM22 224 aa11.66□□□□□ -0.54
USP40-206ENST00000443711 DNAH3Q8TD57 4116 aa11.66□□□□□ -0.54
USP40-206ENST00000443711 ZNF705DP0CH99 300 aaPredicted RBP11.65□□□□□ -0.54
USP40-206ENST00000443711 ZNF705BP0CI00 300 aaPredicted RBP11.65□□□□□ -0.54
USP40-206ENST00000443711 TAGLN2P37802 199 aaKnown RBP11.65□□□□□ -0.54
USP40-206ENST00000443711 DEFA6Q01524 100 aa11.65□□□□□ -0.54
USP40-206ENST00000443711 HIST1H1AQ02539 215 aaPredicted RBP11.65□□□□□ -0.54
USP40-206ENST00000443711 OR4B1Q8NGF8 309 aa11.65□□□□□ -0.54
USP40-206ENST00000443711 CLUHP3Q96NS8 147 aa11.65□□□□□ -0.54
USP40-206ENST00000443711 TXNDC17Q9BRA2 123 aa11.65□□□□□ -0.54
USP40-206ENST00000443711 TCEAL7Q9BRU2 100 aa11.65□□□□□ -0.54
USP40-206ENST00000443711 RPH3ALQ9UNE2 315 aa11.65□□□□□ -0.54
USP40-206ENST00000443711 LOC102724200A0A096LPH7 203 aaPredicted RBP11.64□□□□□ -0.55
USP40-206ENST00000443711 SERTM2A0A1B0GWG4 89 aa11.64□□□□□ -0.55
USP40-206ENST00000443711 RBAKDNA6NC62 111 aa11.64□□□□□ -0.55
USP40-206ENST00000443711 C11orf94C9JXX5 98 aa11.64□□□□□ -0.55
USP40-206ENST00000443711 F6UZH7 168 aa11.64□□□□□ -0.55
USP40-206ENST00000443711 PRB4P10163 310 aaPredicted RBP11.64□□□□□ -0.55
USP40-206ENST00000443711 RPL35AP18077 110 aaKnown RBP11.64□□□□□ -0.55
USP40-206ENST00000443711 ATP5G3P48201 142 aa11.64□□□□□ -0.55
USP40-206ENST00000443711 CNN1P51911 297 aaKnown RBP11.64□□□□□ -0.55
USP40-206ENST00000443711 GNG5P63218 68 aa11.64□□□□□ -0.55
USP40-206ENST00000443711 HAGHQ16775 308 aa11.64□□□□□ -0.55
USP40-206ENST00000443711 TRPT1Q86TN4 253 aaKnown RBP11.64□□□□□ -0.55
USP40-206ENST00000443711 CCDC28AQ8IWP9 274 aa11.64□□□□□ -0.55
USP40-206ENST00000443711 MRAPQ8TCY5 172 aa11.64□□□□□ -0.55
USP40-206ENST00000443711 VAX2Q9UIW0 290 aa11.64□□□□□ -0.55
USP40-206ENST00000443711 IGKV2-40A0A087WW87 121 aaPredicted RBP11.63□□□□□ -0.55
USP40-206ENST00000443711 RBMY1BA6NDE4 496 aaKnown RBP11.63□□□□□ -0.55
USP40-206ENST00000443711 RBMY1EA6NEQ0 496 aaKnown RBP11.63□□□□□ -0.55
USP40-206ENST00000443711 A8MTW9 85 aa11.63□□□□□ -0.55
USP40-206ENST00000443711 NPIPB6E9PJ23 425 aa11.63□□□□□ -0.55
USP40-206ENST00000443711 K7EQM0 130 aa11.63□□□□□ -0.55
USP40-206ENST00000443711 IGKV2D-40P01614 121 aaPredicted RBP11.63□□□□□ -0.55
USP40-206ENST00000443711 IGKV3-20P01619 116 aa11.63□□□□□ -0.55
USP40-206ENST00000443711 TCRAP04437 139 aa11.63□□□□□ -0.55
USP40-206ENST00000443711 RBMY1DP0C7P1 496 aaKnown RBP11.63□□□□□ -0.55
USP40-206ENST00000443711 BCL2P10415 239 aa11.63□□□□□ -0.55
USP40-206ENST00000443711 GOLT1AQ6ZVE7 132 aa11.63□□□□□ -0.55
USP40-206ENST00000443711 HIST1H2BAQ96A08 127 aa11.63□□□□□ -0.55
USP40-206ENST00000443711 LINC00477Q96M19 166 aa11.63□□□□□ -0.55
USP40-206ENST00000443711 ATG101Q9BSB4 218 aa11.63□□□□□ -0.55
USP40-206ENST00000443711 PPP1R14DQ9NXH3 145 aa11.63□□□□□ -0.55
USP40-206ENST00000443711 LOC102723971A0A1B0GUV8 181 aa11.62□□□□□ -0.55
USP40-206ENST00000443711 RBFOX3A6NFN3 312 aa11.62□□□□□ -0.55
USP40-206ENST00000443711 PEX7O00628 323 aa11.62□□□□□ -0.55
USP40-206ENST00000443711 FRMD6-AS1P0C7T7 363 aa11.62□□□□□ -0.55
USP40-206ENST00000443711 NUTF2P61970 127 aaKnown RBP11.62□□□□□ -0.55
USP40-206ENST00000443711 ERCC8Q13216 396 aa11.62□□□□□ -0.55
USP40-206ENST00000443711 CLLU1Q5K131 121 aa11.62□□□□□ -0.55
USP40-206ENST00000443711 TMEM78Q5T7P6 136 aa11.62□□□□□ -0.55
USP40-206ENST00000443711 MORN3Q6PF18 240 aaPredicted RBP11.62□□□□□ -0.55
USP40-206ENST00000443711 LINC00322Q6ZN03 302 aaPredicted RBP11.62□□□□□ -0.55
USP40-206ENST00000443711 C9orf47Q6ZRZ4 202 aa11.62□□□□□ -0.55
USP40-206ENST00000443711 AGPAT4-IT1Q9H0P7 198 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 111 ms