RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 MCRIP2Q9BUT9 160 aaKnown RBP7.44□□□□□ -1.22
CUX1-206ENST00000437600 SOX21Q9Y651 276 aaPredicted RBP7.44□□□□□ -1.22
CUX1-206ENST00000437600 LY96Q9Y6Y9 160 aa7.44□□□□□ -1.22
CUX1-206ENST00000437600 SORL1Q92673 2214 aa7.44□□□□□ -1.22
CUX1-206ENST00000437600 IGHV4-61A0A0C4DH41 118 aa7.44□□□□□ -1.22
CUX1-206ENST00000437600 GNG7O60262 68 aa7.44□□□□□ -1.22
CUX1-206ENST00000437600 HOXB4P17483 251 aaPredicted RBP7.44□□□□□ -1.22
CUX1-206ENST00000437600 Q56UQ5 140 aa7.44□□□□□ -1.22
CUX1-206ENST00000437600 SIGLECL1Q8N7X8 197 aa7.44□□□□□ -1.22
CUX1-206ENST00000437600 OR4B1Q8NGF8 309 aa7.44□□□□□ -1.22
CUX1-206ENST00000437600 GPR82Q96P67 336 aa7.44□□□□□ -1.22
CUX1-206ENST00000437600 SETD2Q9BYW2 2564 aaPredicted RBP7.43□□□□□ -1.22
CUX1-206ENST00000437600 OVOL3O00110 214 aa7.43□□□□□ -1.22
CUX1-206ENST00000437600 BRD3OSQ6XYD6 125 aa7.43□□□□□ -1.22
CUX1-206ENST00000437600 ZNF491Q8N8L2 437 aa7.43□□□□□ -1.22
CUX1-206ENST00000437600 OR11H6Q8NGC7 330 aa7.43□□□□□ -1.22
CUX1-206ENST00000437600 ORAOV1Q8WV07 137 aa7.43□□□□□ -1.22
CUX1-206ENST00000437600 TMUB1Q9BVT8 246 aa7.43□□□□□ -1.22
CUX1-206ENST00000437600 IZUMO1RA6ND01 250 aa7.43□□□□□ -1.22
CUX1-206ENST00000437600 GPX1P07203 203 aa7.43□□□□□ -1.22
CUX1-206ENST00000437600 HLA-DMBP28068 263 aa7.43□□□□□ -1.22
CUX1-206ENST00000437600 UBE2V1Q13404 147 aa7.43□□□□□ -1.22
CUX1-206ENST00000437600 SMIM12Q96EX1 92 aa7.43□□□□□ -1.22
CUX1-206ENST00000437600 FANCD2OSQ96PS1 177 aa7.43□□□□□ -1.22
CUX1-206ENST00000437600 PSMG3-AS1Q96PY0 264 aa7.43□□□□□ -1.22
CUX1-206ENST00000437600 NRN1Q9NPD7 142 aa7.43□□□□□ -1.22
CUX1-206ENST00000437600 UQCR10Q9UDW1 63 aa7.43□□□□□ -1.22
CUX1-206ENST00000437600 G3V318 75 aa7.42□□□□□ -1.22
CUX1-206ENST00000437600 M0R1W7 72 aa7.42□□□□□ -1.22
CUX1-206ENST00000437600 ECSCRQ19T08 205 aa7.42□□□□□ -1.22
CUX1-206ENST00000437600 C5orf64Q2M2E5 130 aa7.42□□□□□ -1.22
CUX1-206ENST00000437600 TMEM219Q86XT9 240 aa7.42□□□□□ -1.22
CUX1-206ENST00000437600 OR4C5Q8NGB2 326 aa7.42□□□□□ -1.22
CUX1-206ENST00000437600 IGHV4-30-2A0A087WSY4 118 aa7.42□□□□□ -1.22
CUX1-206ENST00000437600 ZNF785A8K8V0 405 aa7.42□□□□□ -1.22
CUX1-206ENST00000437600 SAA4P35542 130 aa7.42□□□□□ -1.22
CUX1-206ENST00000437600 ERASQ7Z444 233 aa7.42□□□□□ -1.22
CUX1-206ENST00000437600 DAZAP1Q96EP5 407 aaKnown RBP7.42□□□□□ -1.22
CUX1-206ENST00000437600 RNF125Q96EQ8 232 aa7.42□□□□□ -1.22
CUX1-206ENST00000437600 CHRDL1Q9BU40 450 aa7.42□□□□□ -1.22
CUX1-206ENST00000437600 IGHV2-70DA0A0C4DH43 119 aa7.41□□□□□ -1.22
CUX1-206ENST00000437600 ODF3BA8MYP8 253 aa7.41□□□□□ -1.22
CUX1-206ENST00000437600 ZNF207O43670 478 aaKnown RBP7.41□□□□□ -1.22
CUX1-206ENST00000437600 P01737 135 aa7.41□□□□□ -1.22
CUX1-206ENST00000437600 CSN3P07498 182 aa7.41□□□□□ -1.22
CUX1-206ENST00000437600 CEACAM3P40198 252 aa7.41□□□□□ -1.22
CUX1-206ENST00000437600 PIP4P2Q8N4L2 257 aa7.41□□□□□ -1.22
CUX1-206ENST00000437600 ZNF738Q8NE65 137 aa7.41□□□□□ -1.22
CUX1-206ENST00000437600 MBD6Q96DN6 1003 aa7.41□□□□□ -1.22
CUX1-206ENST00000437600 SIRPDQ9H106 197 aa7.41□□□□□ -1.22
CUX1-206ENST00000437600 C7orf69Q9H7B7 122 aa7.41□□□□□ -1.22
CUX1-206ENST00000437600 MRPL27Q9P0M9 148 aaKnown RBP7.41□□□□□ -1.22
CUX1-206ENST00000437600 H0Y8G0 127 aa7.41□□□□□ -1.22
CUX1-206ENST00000437600 IGLC2P0DOY2 106 aa7.41□□□□□ -1.22
CUX1-206ENST00000437600 IGLC3P0DOY3 106 aa7.41□□□□□ -1.22
CUX1-206ENST00000437600 PAX2Q02962 417 aa7.41□□□□□ -1.22
CUX1-206ENST00000437600 RNASEKQ6P5S7 137 aaKnown RBP7.41□□□□□ -1.22
CUX1-206ENST00000437600 C5orf17Q8NAS9 161 aa7.41□□□□□ -1.22
CUX1-206ENST00000437600 C18orf32Q8TCD1 76 aa7.41□□□□□ -1.22
CUX1-206ENST00000437600 TSKUQ8WUA8 353 aa7.41□□□□□ -1.22
CUX1-206ENST00000437600 C8orf49Q96NF6 230 aa7.41□□□□□ -1.22
CUX1-206ENST00000437600 MLST8Q9BVC4 326 aa7.41□□□□□ -1.22
CUX1-206ENST00000437600 ARL2-SNX15V9GYD0 113 aa7.41□□□□□ -1.22
CUX1-206ENST00000437600 IGLV2-11P01706 119 aa7.41□□□□□ -1.22
CUX1-206ENST00000437600 CTRLP40313 264 aa7.41□□□□□ -1.22
CUX1-206ENST00000437600 GRAMD2BQ96HH9 432 aa7.41□□□□□ -1.22
CUX1-206ENST00000437600 TP73-AS1Q9UF72 201 aa7.41□□□□□ -1.22
CUX1-206ENST00000437600 COX11Q9Y6N1 276 aa7.41□□□□□ -1.22
CUX1-206ENST00000437600 HIST1H1EP10412 219 aaKnown RBP7.4□□□□□ -1.22
CUX1-206ENST00000437600 Q8N976 141 aa7.4□□□□□ -1.22
CUX1-206ENST00000437600 ARPC1AQ92747 370 aa7.4□□□□□ -1.22
CUX1-206ENST00000437600 ZC2HC1AQ96GY0 325 aa7.4□□□□□ -1.22
CUX1-206ENST00000437600 ATP6V0BQ99437 205 aa7.4□□□□□ -1.22
CUX1-206ENST00000437600 F8W735 103 aaPredicted RBP7.4□□□□□ -1.23
CUX1-206ENST00000437600 OCIAD2Q56VL3 154 aa7.4□□□□□ -1.23
CUX1-206ENST00000437600 BPIFA4PQ86YQ2 179 aa7.4□□□□□ -1.23
CUX1-206ENST00000437600 Q8TAT8 98 aa7.4□□□□□ -1.23
CUX1-206ENST00000437600 TRBV19A0A075B6N1 114 aa7.39□□□□□ -1.23
CUX1-206ENST00000437600 IGKV2-40A0A087WW87 121 aaPredicted RBP7.39□□□□□ -1.23
CUX1-206ENST00000437600 LOC102724200A0A096LPH7 203 aaPredicted RBP7.39□□□□□ -1.23
CUX1-206ENST00000437600 TRAV40A0A0B4J280 105 aa7.39□□□□□ -1.23
CUX1-206ENST00000437600 LTAP01374 205 aa7.39□□□□□ -1.23
CUX1-206ENST00000437600 IGKV2D-40P01614 121 aaPredicted RBP7.39□□□□□ -1.23
CUX1-206ENST00000437600 HLA-DQA1P01909 254 aa7.39□□□□□ -1.23
CUX1-206ENST00000437600 CLEC3BP05452 202 aa7.39□□□□□ -1.23
CUX1-206ENST00000437600 C3orf79P0CE67 100 aa7.39□□□□□ -1.23
CUX1-206ENST00000437600 ESDP10768 282 aa7.39□□□□□ -1.23
CUX1-206ENST00000437600 CRIP1P50238 77 aa7.39□□□□□ -1.23
CUX1-206ENST00000437600 RIPPLY3P57055 190 aa7.39□□□□□ -1.23
CUX1-206ENST00000437600 Q0VG73 95 aa7.39□□□□□ -1.23
CUX1-206ENST00000437600 PVRIGQ6DKI7 326 aa7.39□□□□□ -1.23
CUX1-206ENST00000437600 ZNF562Q6V9R5 426 aa7.39□□□□□ -1.23
CUX1-206ENST00000437600 LINC00173Q6ZV60 143 aa7.39□□□□□ -1.23
CUX1-206ENST00000437600 KLF12Q9Y4X4 402 aa7.39□□□□□ -1.23
CUX1-206ENST00000437600 NIPBLQ6KC79 2804 aaeCLIP7.39□□□□□ -1.233e-10■■■■■ 76.4
CUX1-206ENST00000437600 TOMM40O96008 361 aa7.39□□□□□ -1.23
CUX1-206ENST00000437600 EGR2P11161 476 aaPredicted RBP7.39□□□□□ -1.23
CUX1-206ENST00000437600 GPR183P32249 361 aa7.39□□□□□ -1.23
CUX1-206ENST00000437600 FXYD7P58549 80 aa7.39□□□□□ -1.23
CUX1-206ENST00000437600 VAMP3Q15836 100 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms