RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 TRAV5A0A0B4J249 113 aa5.59□□□□□ -1.51
SCN1A-204ENST00000423058 PFN1P07737 140 aaKnown RBP5.59□□□□□ -1.51
SCN1A-204ENST00000423058 PCP4P48539 62 aa5.59□□□□□ -1.51
SCN1A-204ENST00000423058 MRAPQ8TCY5 172 aa5.59□□□□□ -1.51
SCN1A-204ENST00000423058 XCL2Q9UBD3 114 aa5.59□□□□□ -1.51
SCN1A-204ENST00000423058 GREM1O60565 184 aa5.59□□□□□ -1.52
SCN1A-204ENST00000423058 CRYGSP22914 178 aa5.59□□□□□ -1.52
SCN1A-204ENST00000423058 OCC1Q8TAD7 63 aa5.59□□□□□ -1.52
SCN1A-204ENST00000423058 ZNF837Q96EG3 531 aaPredicted RBP5.59□□□□□ -1.52
SCN1A-204ENST00000423058 A0A087WWL8 130 aa5.59□□□□□ -1.52
SCN1A-204ENST00000423058 CFHR3Q02985 330 aa5.59□□□□□ -1.52
SCN1A-204ENST00000423058 LINC00114Q6XXX2 140 aa5.59□□□□□ -1.52
SCN1A-204ENST00000423058 MED13LQ71F56 2210 aa5.58□□□□□ -1.52
SCN1A-204ENST00000423058 A0A1B0GUS0 222 aa5.58□□□□□ -1.52
SCN1A-204ENST00000423058 CCL18P55774 89 aa5.58□□□□□ -1.52
SCN1A-204ENST00000423058 C1orf194Q5T5A4 169 aa5.58□□□□□ -1.52
SCN1A-204ENST00000423058 GFRA4Q9GZZ7 299 aa5.58□□□□□ -1.52
SCN1A-204ENST00000423058 SCRT2Q9NQ03 307 aa5.58□□□□□ -1.52
SCN1A-204ENST00000423058 DEPPQ9NTK1 212 aa5.58□□□□□ -1.52
SCN1A-204ENST00000423058 NBASA2RRP1 2371 aa5.58□□□□□ -1.52
SCN1A-204ENST00000423058 CDKN1BP46527 198 aa5.58□□□□□ -1.52
SCN1A-204ENST00000423058 STPG4Q8N801 248 aa5.58□□□□□ -1.52
SCN1A-204ENST00000423058 IGF2BP2-AS1Q96M15 143 aa5.58□□□□□ -1.52
SCN1A-204ENST00000423058 CACNA1HO95180 2353 aa5.58□□□□□ -1.52
SCN1A-204ENST00000423058 IGKV1D-43A0A0B4J1Z2 117 aa5.58□□□□□ -1.52
SCN1A-204ENST00000423058 ZNF503Q96F45 646 aa5.58□□□□□ -1.52
SCN1A-204ENST00000423058 IGKV2D-24A0A075B6R9 120 aa5.58□□□□□ -1.52
SCN1A-204ENST00000423058 IGHV1-24A0A0C4DH33 117 aa5.58□□□□□ -1.52
SCN1A-204ENST00000423058 GAS1P54826 345 aa5.58□□□□□ -1.52
SCN1A-204ENST00000423058 C1QTNF9P0C862 333 aa5.58□□□□□ -1.52
SCN1A-204ENST00000423058 CD300CQ08708 224 aa5.58□□□□□ -1.52
SCN1A-204ENST00000423058 NDUFAF3Q9BU61 184 aa5.58□□□□□ -1.52
SCN1A-204ENST00000423058 KIAA1549LQ6ZVL6 1849 aa5.58□□□□□ -1.52
SCN1A-204ENST00000423058 TRAV1-1A0A0B4J248 108 aa5.57□□□□□ -1.52
SCN1A-204ENST00000423058 TREML4Q6UXN2 200 aa5.57□□□□□ -1.52
SCN1A-204ENST00000423058 BCL6BQ8N143 479 aaPredicted RBP5.57□□□□□ -1.52
SCN1A-204ENST00000423058 ZNF319Q9P2F9 582 aa5.57□□□□□ -1.52
SCN1A-204ENST00000423058 TRBV20-1A0A075B6N2 111 aa5.57□□□□□ -1.52
SCN1A-204ENST00000423058 IGHV2-70DA0A0C4DH43 119 aa5.57□□□□□ -1.52
SCN1A-204ENST00000423058 GAGE12JA6NER3 117 aa5.57□□□□□ -1.52
SCN1A-204ENST00000423058 PRSS29PA6NIE9 313 aa5.57□□□□□ -1.52
SCN1A-204ENST00000423058 GAGE1Q13065 139 aa5.57□□□□□ -1.52
SCN1A-204ENST00000423058 GAGE4Q13068 117 aa5.57□□□□□ -1.52
SCN1A-204ENST00000423058 GAGE5Q13069 117 aa5.57□□□□□ -1.52
SCN1A-204ENST00000423058 IGKV1D-13A0A0B4J2D9 117 aa5.57□□□□□ -1.52
SCN1A-204ENST00000423058 IGKV1-13P0DP09 117 aa5.57□□□□□ -1.52
SCN1A-204ENST00000423058 Q6ZS92 163 aa5.57□□□□□ -1.52
SCN1A-204ENST00000423058 GGNQ86UU5 652 aa5.57□□□□□ -1.52
SCN1A-204ENST00000423058 NCR2O95944 276 aa5.57□□□□□ -1.52
SCN1A-204ENST00000423058 IGHG4P01861 327 aa5.57□□□□□ -1.52
SCN1A-204ENST00000423058 HERVK_113P63121 156 aa5.57□□□□□ -1.52
SCN1A-204ENST00000423058 CR1LQ2VPA4 569 aa5.57□□□□□ -1.52
SCN1A-204ENST00000423058 GAFA1Q96PS6 74 aa5.57□□□□□ -1.52
SCN1A-204ENST00000423058 LY96Q9Y6Y9 160 aa5.57□□□□□ -1.52
SCN1A-204ENST00000423058 DKK1O94907 266 aa5.57□□□□□ -1.52
SCN1A-204ENST00000423058 MDS2Q8NDY4 140 aa5.57□□□□□ -1.52
SCN1A-204ENST00000423058 OVOL3O00110 214 aa5.57□□□□□ -1.52
SCN1A-204ENST00000423058 PFN2P35080 140 aa5.57□□□□□ -1.52
SCN1A-204ENST00000423058 SEC61GP60059 68 aa5.57□□□□□ -1.52
SCN1A-204ENST00000423058 SPINK13Q1W4C9 94 aa5.57□□□□□ -1.52
SCN1A-204ENST00000423058 LYZL4Q96KX0 146 aa5.57□□□□□ -1.52
SCN1A-204ENST00000423058 ZNF106Q9H2Y7 1883 aaKnown RBP5.57□□□□□ -1.52
SCN1A-204ENST00000423058 GAGE12BA1L429 117 aa5.56□□□□□ -1.52
SCN1A-204ENST00000423058 NDUFA4O00483 81 aa5.56□□□□□ -1.52
SCN1A-204ENST00000423058 NDUFB1O75438 58 aa5.56□□□□□ -1.52
SCN1A-204ENST00000423058 GAGE7O76087 117 aa5.56□□□□□ -1.52
SCN1A-204ENST00000423058 GAGE12FP0CL80 117 aa5.56□□□□□ -1.52
SCN1A-204ENST00000423058 GAGE12GP0CL81 117 aa5.56□□□□□ -1.52
SCN1A-204ENST00000423058 GAGE12IP0CL82 117 aa5.56□□□□□ -1.52
SCN1A-204ENST00000423058 DMRTC2Q8IXT2 367 aaPredicted RBP5.56□□□□□ -1.52
SCN1A-204ENST00000423058 TM2D2Q9BX73 214 aa5.56□□□□□ -1.52
SCN1A-204ENST00000423058 NUP35Q8NFH5 326 aa5.56□□□□□ -1.52
SCN1A-204ENST00000423058 UTF1Q5T230 341 aa5.56□□□□□ -1.52
SCN1A-204ENST00000423058 C1orf43Q9BWL3 253 aa5.56□□□□□ -1.52
SCN1A-204ENST00000423058 WDR83OSQ9Y284 106 aa5.56□□□□□ -1.52
SCN1A-204ENST00000423058 IGHV1OR15-1A0A075B7D0 117 aa5.56□□□□□ -1.52
SCN1A-204ENST00000423058 FUSP35637 526 aaKnown RBP eCLIP5.56□□□□□ -1.52
SCN1A-204ENST00000423058 TMEM258P61165 79 aa5.56□□□□□ -1.52
SCN1A-204ENST00000423058 RHOHQ15669 191 aa5.56□□□□□ -1.52
SCN1A-204ENST00000423058 Q71RC1 249 aaPredicted RBP5.56□□□□□ -1.52
SCN1A-204ENST00000423058 LHFPL4Q7Z7J7 247 aa5.56□□□□□ -1.52
SCN1A-204ENST00000423058 ATP6V0BQ99437 205 aa5.56□□□□□ -1.52
SCN1A-204ENST00000423058 MRPL27Q9P0M9 148 aaKnown RBP5.56□□□□□ -1.52
SCN1A-204ENST00000423058 SELENOKQ9Y6D0 94 aa5.56□□□□□ -1.52
SCN1A-204ENST00000423058 BUB3O43684 328 aa5.56□□□□□ -1.52
SCN1A-204ENST00000423058 COL8A2P25067 703 aa5.56□□□□□ -1.52
SCN1A-204ENST00000423058 GUSBP1Q15486 140 aa5.56□□□□□ -1.52
SCN1A-204ENST00000423058 PINLYPA6NC86 204 aa5.56□□□□□ -1.52
SCN1A-204ENST00000423058 E7EQL1 145 aa5.56□□□□□ -1.52
SCN1A-204ENST00000423058 UBE2CO00762 179 aa5.56□□□□□ -1.52
SCN1A-204ENST00000423058 ZNF134P52741 427 aa5.56□□□□□ -1.52
SCN1A-204ENST00000423058 GAGE6Q13070 117 aa5.56□□□□□ -1.52
SCN1A-204ENST00000423058 MUC4Q99102 2169 aa5.55□□□□□ -1.52
SCN1A-204ENST00000423058 RPL18AQ02543 176 aaKnown RBP5.55□□□□□ -1.52
SCN1A-204ENST00000423058 Q6ZWC4 215 aa5.55□□□□□ -1.52
SCN1A-204ENST00000423058 CD177Q8N6Q3 437 aa5.55□□□□□ -1.52
SCN1A-204ENST00000423058 REG4Q9BYZ8 158 aa5.55□□□□□ -1.52
SCN1A-204ENST00000423058 CCL24O00175 119 aa5.55□□□□□ -1.52
SCN1A-204ENST00000423058 ID3Q02535 119 aa5.55□□□□□ -1.52
SCN1A-204ENST00000423058 Q8TAT8 98 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms