RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 CNTFRP26992 372 aa8.41□□□□□ -1.06
USP54-204ENST00000422491 TCTEX1D4Q5JR98 221 aa8.41□□□□□ -1.06
USP54-204ENST00000422491 ZNF479Q96JC4 524 aa8.41□□□□□ -1.06
USP54-204ENST00000422491 PRO0461Q9UI25 63 aa8.41□□□□□ -1.06
USP54-204ENST00000422491 HLA-DRB4X5D2U9 266 aa8.41□□□□□ -1.06
USP54-204ENST00000422491 PLCE1Q9P212 2302 aa8.41□□□□□ -1.06
USP54-204ENST00000422491 SMG1Q96Q15 3661 aaKnown RBP8.4□□□□□ -1.06
USP54-204ENST00000422491 NPIPB5A8MRT5 1133 aa8.4□□□□□ -1.06
USP54-204ENST00000422491 Q5PR19 223 aa8.4□□□□□ -1.06
USP54-204ENST00000422491 PRO3102Q9H379 93 aa8.4□□□□□ -1.06
USP54-204ENST00000422491 WDFY4Q6ZS81 3184 aa8.4□□□□□ -1.06
USP54-204ENST00000422491 ENSAO43768 121 aaKnown RBP8.4□□□□□ -1.06
USP54-204ENST00000422491 RBP4P02753 201 aa8.4□□□□□ -1.06
USP54-204ENST00000422491 FCER1GP30273 86 aa8.4□□□□□ -1.06
USP54-204ENST00000422491 LEPP41159 167 aa8.4□□□□□ -1.06
USP54-204ENST00000422491 CKS1BP61024 79 aa8.4□□□□□ -1.06
USP54-204ENST00000422491 SEM1Q6ZVN7 128 aa8.4□□□□□ -1.06
USP54-204ENST00000422491 COX8CQ7Z4L0 72 aa8.4□□□□□ -1.06
USP54-204ENST00000422491 GTSCR1Q86UQ5 136 aa8.4□□□□□ -1.06
USP54-204ENST00000422491 RNF185Q96GF1 192 aa8.4□□□□□ -1.06
USP54-204ENST00000422491 SIGLEC9Q9Y336 463 aa8.4□□□□□ -1.06
USP54-204ENST00000422491 GAS8-AS1O95177 125 aa8.39□□□□□ -1.07
USP54-204ENST00000422491 WT1P19544 449 aaPredicted RBP8.39□□□□□ -1.07
USP54-204ENST00000422491 TWIST1Q15672 202 aa8.39□□□□□ -1.07
USP54-204ENST00000422491 ZC2HC1BQ5TFG8 222 aa8.39□□□□□ -1.07
USP54-204ENST00000422491 ZNF575Q86XF7 245 aa8.39□□□□□ -1.07
USP54-204ENST00000422491 ZNF502Q8TBZ5 544 aa8.39□□□□□ -1.07
USP54-204ENST00000422491 MAP1LC3AQ9H492 121 aa8.39□□□□□ -1.07
USP54-204ENST00000422491 CEACAM4O75871 244 aa8.39□□□□□ -1.07
USP54-204ENST00000422491 IGLC6P0CF74 106 aa8.39□□□□□ -1.07
USP54-204ENST00000422491 EGR2P11161 476 aaPredicted RBP8.39□□□□□ -1.07
USP54-204ENST00000422491 INSL3P51460 131 aa8.39□□□□□ -1.07
USP54-204ENST00000422491 C12orf74Q32Q52 190 aa8.39□□□□□ -1.07
USP54-204ENST00000422491 KLF17Q5JT82 389 aaPredicted RBP8.39□□□□□ -1.07
USP54-204ENST00000422491 AMTNQ6UX39 209 aa8.39□□□□□ -1.07
USP54-204ENST00000422491 PRSS1P07477 247 aa8.39□□□□□ -1.07
USP54-204ENST00000422491 C3orf36Q3SXR2 165 aa8.39□□□□□ -1.07
USP54-204ENST00000422491 ZNF474Q6S9Z5 364 aaPredicted RBP8.39□□□□□ -1.07
USP54-204ENST00000422491 MAPKAPK5-AS1Q8N8E1 139 aa8.39□□□□□ -1.07
USP54-204ENST00000422491 DPM2O94777 84 aa8.38□□□□□ -1.07
USP54-204ENST00000422491 DLX6P56179 175 aa8.38□□□□□ -1.07
USP54-204ENST00000422491 CCL8P80075 99 aa8.38□□□□□ -1.07
USP54-204ENST00000422491 ATP5G2Q06055 141 aa8.38□□□□□ -1.07
USP54-204ENST00000422491 SCGB2A2Q13296 93 aa8.38□□□□□ -1.07
USP54-204ENST00000422491 TAL2Q16559 108 aa8.38□□□□□ -1.07
USP54-204ENST00000422491 ZNF491Q8N8L2 437 aa8.38□□□□□ -1.07
USP54-204ENST00000422491 PSMG3-AS1Q96PY0 264 aa8.38□□□□□ -1.07
USP54-204ENST00000422491 ASPMQ8IZT6 3477 aa8.38□□□□□ -1.07
USP54-204ENST00000422491 TMEM8BA6NDV4 472 aa8.38□□□□□ -1.07
USP54-204ENST00000422491 PRSS47A8MTI9 375 aa8.38□□□□□ -1.07
USP54-204ENST00000422491 PRRG2O14669 202 aa8.38□□□□□ -1.07
USP54-204ENST00000422491 LINC01559Q495D7 138 aa8.38□□□□□ -1.07
USP54-204ENST00000422491 GAGE13Q4V321 117 aa8.38□□□□□ -1.07
USP54-204ENST00000422491 FOXC2Q99958 501 aa8.38□□□□□ -1.07
USP54-204ENST00000422491 NXT2Q9NPJ8 142 aaKnown RBP8.38□□□□□ -1.07
USP54-204ENST00000422491 MSRB1Q9NZV6 116 aa8.38□□□□□ -1.07
USP54-204ENST00000422491 TRAV26-1A0A087WT03 109 aa8.37□□□□□ -1.07
USP54-204ENST00000422491 PDE6HQ13956 83 aa8.37□□□□□ -1.07
USP54-204ENST00000422491 PPP1R27Q86WC6 154 aa8.37□□□□□ -1.07
USP54-204ENST00000422491 MTURNQ8N3F0 131 aa8.37□□□□□ -1.07
USP54-204ENST00000422491 RNF125Q96EQ8 232 aa8.37□□□□□ -1.07
USP54-204ENST00000422491 MRAP2Q96G30 205 aa8.37□□□□□ -1.07
USP54-204ENST00000422491 K7EIM0 57 aa8.37□□□□□ -1.07
USP54-204ENST00000422491 ATP5LO75964 103 aa8.37□□□□□ -1.07
USP54-204ENST00000422491 TNFRSF6BO95407 300 aa8.37□□□□□ -1.07
USP54-204ENST00000422491 ZNF80P51504 273 aaPredicted RBP8.37□□□□□ -1.07
USP54-204ENST00000422491 LPAL2Q16609 132 aa8.37□□□□□ -1.07
USP54-204ENST00000422491 RRN3P1Q2M238 152 aa8.37□□□□□ -1.07
USP54-204ENST00000422491 PRR25Q96S07 402 aa8.37□□□□□ -1.07
USP54-204ENST00000422491 CNFNQ9BYD5 112 aa8.37□□□□□ -1.07
USP54-204ENST00000422491 AGRNO00468 2067 aa8.37□□□□□ -1.07
USP54-204ENST00000422491 MBD3L4A6NDZ8 208 aaPredicted RBP8.36□□□□□ -1.07
USP54-204ENST00000422491 MBD3L3A6NE82 208 aaPredicted RBP8.36□□□□□ -1.07
USP54-204ENST00000422491 MBD3L5A6NJ08 208 aaPredicted RBP8.36□□□□□ -1.07
USP54-204ENST00000422491 LYPD2Q6UXB3 125 aa8.36□□□□□ -1.07
USP54-204ENST00000422491 MBD3L2Q8NHZ7 208 aaPredicted RBP8.36□□□□□ -1.07
USP54-204ENST00000422491 TMEM158Q8WZ71 300 aa8.36□□□□□ -1.07
USP54-204ENST00000422491 AAMDCQ9H7C9 122 aa8.36□□□□□ -1.07
USP54-204ENST00000422491 IGKV2-40A0A087WW87 121 aaPredicted RBP8.36□□□□□ -1.07
USP54-204ENST00000422491 TRAV40A0A0B4J280 105 aa8.36□□□□□ -1.07
USP54-204ENST00000422491 A0A1B0GWB2 263 aa8.36□□□□□ -1.07
USP54-204ENST00000422491 IGKV2D-40P01614 121 aaPredicted RBP8.36□□□□□ -1.07
USP54-204ENST00000422491 IL4P05112 153 aa8.36□□□□□ -1.07
USP54-204ENST00000422491 PLGLAQ15195 96 aa8.36□□□□□ -1.07
USP54-204ENST00000422491 C22orf34Q6ZV56 151 aa8.36□□□□□ -1.07
USP54-204ENST00000422491 IGLV2-18A0A075B6J9 118 aa8.35□□□□□ -1.07
USP54-204ENST00000422491 TNFRSF13BO14836 293 aaPredicted RBP8.35□□□□□ -1.07
USP54-204ENST00000422491 ZNF883P0CG24 379 aa8.35□□□□□ -1.07
USP54-204ENST00000422491 IGHV1-8P0DP01 117 aa8.35□□□□□ -1.07
USP54-204ENST00000422491 LOXP28300 417 aaPredicted RBP8.35□□□□□ -1.07
USP54-204ENST00000422491 CRYBA4P53673 196 aa8.35□□□□□ -1.07
USP54-204ENST00000422491 SRSF6Q13247 344 aaKnown RBP8.35□□□□□ -1.07
USP54-204ENST00000422491 FDCSPQ8NFU4 85 aa8.35□□□□□ -1.07
USP54-204ENST00000422491 C20orf78Q9BR46 151 aa8.35□□□□□ -1.07
USP54-204ENST00000422491 TMEM160Q9NX00 188 aa8.35□□□□□ -1.07
USP54-204ENST00000422491 MRPL35Q9NZE8 188 aaKnown RBP8.35□□□□□ -1.07
USP54-204ENST00000422491 CTSZQ9UBR2 303 aa8.35□□□□□ -1.07
USP54-204ENST00000422491 TRBV7-3A0A075B6L6 115 aa8.35□□□□□ -1.07
USP54-204ENST00000422491 TMEM155Q4W5P6 130 aa8.35□□□□□ -1.07
USP54-204ENST00000422491 TTC9CQ8N5M4 171 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms