RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 NDUFC2O95298 119 aa4.9□□□□□ -1.62
SCN1A-203ENST00000409050 GAGE12FP0CL80 117 aa4.9□□□□□ -1.62
SCN1A-203ENST00000409050 GAGE12GP0CL81 117 aa4.9□□□□□ -1.62
SCN1A-203ENST00000409050 GAGE12IP0CL82 117 aa4.9□□□□□ -1.62
SCN1A-203ENST00000409050 GAGE4Q13068 117 aa4.9□□□□□ -1.62
SCN1A-203ENST00000409050 DICER1Q9UPY3 1922 aaKnown RBP4.9□□□□□ -1.63
SCN1A-203ENST00000409050 TMEM89A2RUT3 159 aa4.9□□□□□ -1.63
SCN1A-203ENST00000409050 LTAP01374 205 aa4.9□□□□□ -1.63
SCN1A-203ENST00000409050 PPIFP30405 207 aaKnown RBP4.9□□□□□ -1.63
SCN1A-203ENST00000409050 ZNF134P52741 427 aa4.9□□□□□ -1.63
SCN1A-203ENST00000409050 BRCA1P38398 1863 aaKnown RBP4.9□□□□□ -1.63
SCN1A-203ENST00000409050 SDHAF1A6NFY7 115 aa4.9□□□□□ -1.63
SCN1A-203ENST00000409050 IGLV3-1P01715 115 aa4.9□□□□□ -1.63
SCN1A-203ENST00000409050 MRPL51Q4U2R6 128 aaKnown RBP4.9□□□□□ -1.63
SCN1A-203ENST00000409050 FOXI2Q6ZQN5 318 aa4.9□□□□□ -1.63
SCN1A-203ENST00000409050 PTPRZ1P23471 2315 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-203ENST00000409050 PINLYPA6NC86 204 aa4.9□□□□□ -1.63
SCN1A-203ENST00000409050 C9JQL5 133 aa4.9□□□□□ -1.63
SCN1A-203ENST00000409050 ATOX1O00244 68 aa4.9□□□□□ -1.63
SCN1A-203ENST00000409050 IGHV1-69P01742 117 aa4.9□□□□□ -1.63
SCN1A-203ENST00000409050 Q6ZSR3 168 aa4.9□□□□□ -1.63
SCN1A-203ENST00000409050 ATP6V0E2Q8NHE4 81 aa4.9□□□□□ -1.63
SCN1A-203ENST00000409050 KLF2Q9Y5W3 355 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-203ENST00000409050 SBF2Q86WG5 1849 aa4.89□□□□□ -1.63
SCN1A-203ENST00000409050 KIR2DL5BA0A0G2JN68 375 aa4.89□□□□□ -1.63
SCN1A-203ENST00000409050 KIR2DL5BA0A0G2JPC4 375 aa4.89□□□□□ -1.63
SCN1A-203ENST00000409050 A6NNC1 897 aa4.89□□□□□ -1.63
SCN1A-203ENST00000409050 J3QQQ9 107 aa4.89□□□□□ -1.63
SCN1A-203ENST00000409050 PRR20EP86478 221 aa4.89□□□□□ -1.63
SCN1A-203ENST00000409050 PRR20CP86479 221 aa4.89□□□□□ -1.63
SCN1A-203ENST00000409050 PRR20DP86480 221 aa4.89□□□□□ -1.63
SCN1A-203ENST00000409050 PRR20BP86481 221 aa4.89□□□□□ -1.63
SCN1A-203ENST00000409050 PRR20AP86496 221 aa4.89□□□□□ -1.63
SCN1A-203ENST00000409050 C10orf55Q5SWW7 151 aa4.89□□□□□ -1.63
SCN1A-203ENST00000409050 KIR2DL5AQ8N109 375 aa4.89□□□□□ -1.63
SCN1A-203ENST00000409050 DOCK4Q8N1I0 1966 aa4.89□□□□□ -1.63
SCN1A-203ENST00000409050 IGLV3-9A0A075B6K5 115 aa4.89□□□□□ -1.63
SCN1A-203ENST00000409050 IGHV2-70DA0A0C4DH43 119 aa4.89□□□□□ -1.63
SCN1A-203ENST00000409050 GAGE12HA6NDE8 117 aa4.89□□□□□ -1.63
SCN1A-203ENST00000409050 IGLV1-44P01699 117 aa4.89□□□□□ -1.63
SCN1A-203ENST00000409050 TRAV3A0A0B4J244 114 aa4.89□□□□□ -1.63
SCN1A-203ENST00000409050 TRAV12-1A0A0B4J245 112 aa4.89□□□□□ -1.63
SCN1A-203ENST00000409050 IGKV3D-20A0A0C4DH25 116 aa4.89□□□□□ -1.63
SCN1A-203ENST00000409050 PSCAO43653 123 aa4.89□□□□□ -1.63
SCN1A-203ENST00000409050 MSMBP08118 114 aa4.89□□□□□ -1.63
SCN1A-203ENST00000409050 CXCL5P42830 114 aa4.89□□□□□ -1.63
SCN1A-203ENST00000409050 PAX9P55771 341 aa4.89□□□□□ -1.63
SCN1A-203ENST00000409050 SIGLEC8Q9NYZ4 499 aa4.89□□□□□ -1.63
SCN1A-203ENST00000409050 FGF6P10767 208 aa4.88□□□□□ -1.63
SCN1A-203ENST00000409050 COL4A5P29400 1685 aa4.88□□□□□ -1.63
SCN1A-203ENST00000409050 VOPP1Q96AW1 172 aa4.88□□□□□ -1.63
SCN1A-203ENST00000409050 C1orf147Q96MC9 270 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-203ENST00000409050 ORMDL1Q9P0S3 153 aa4.88□□□□□ -1.63
SCN1A-203ENST00000409050 A0A1B0GUS0 222 aa4.88□□□□□ -1.63
SCN1A-203ENST00000409050 JMJD7-PLA2G4BH0Y9G9 81 aa4.88□□□□□ -1.63
SCN1A-203ENST00000409050 CFC1BP0CG36 223 aa4.88□□□□□ -1.63
SCN1A-203ENST00000409050 CFC1P0CG37 223 aa4.88□□□□□ -1.63
SCN1A-203ENST00000409050 GAGE5Q13069 117 aa4.88□□□□□ -1.63
SCN1A-203ENST00000409050 GAGE6Q13070 117 aa4.88□□□□□ -1.63
SCN1A-203ENST00000409050 TCTEX1D4Q5JR98 221 aa4.88□□□□□ -1.63
SCN1A-203ENST00000409050 Q6ZRM9 215 aa4.88□□□□□ -1.63
SCN1A-203ENST00000409050 DEFB125Q8N687 156 aa4.88□□□□□ -1.63
SCN1A-203ENST00000409050 ARID1AO14497 2285 aa4.88□□□□□ -1.63
SCN1A-203ENST00000409050 CD33P20138 364 aa4.88□□□□□ -1.63
SCN1A-203ENST00000409050 FHL1Q13642 323 aa4.88□□□□□ -1.63
SCN1A-203ENST00000409050 C8orf86Q6ZUL3 223 aa4.88□□□□□ -1.63
SCN1A-203ENST00000409050 TRAV13-1A0A0B4J241 112 aa4.88□□□□□ -1.63
SCN1A-203ENST00000409050 A0A0G2JNJ9 132 aa4.88□□□□□ -1.63
SCN1A-203ENST00000409050 DAD1P61803 113 aa4.88□□□□□ -1.63
SCN1A-203ENST00000409050 MRPL23Q16540 153 aaKnown RBP4.88□□□□□ -1.63
SCN1A-203ENST00000409050 SPATA25Q9BR10 227 aa4.88□□□□□ -1.63
SCN1A-203ENST00000409050 Q9UFV3 132 aa4.88□□□□□ -1.63
SCN1A-203ENST00000409050 DOCK5Q9H7D0 1870 aa4.88□□□□□ -1.63
SCN1A-203ENST00000409050 OTOFQ9HC10 1997 aa4.87□□□□□ -1.63
SCN1A-203ENST00000409050 A0A0G2JRQ6 117 aa4.87□□□□□ -1.63
SCN1A-203ENST00000409050 IGHV7-4-1A0A0J9YVY3 117 aa4.87□□□□□ -1.63
SCN1A-203ENST00000409050 SAA4P35542 130 aa4.87□□□□□ -1.63
SCN1A-203ENST00000409050 SLC25A29Q8N8R3 303 aa4.87□□□□□ -1.63
SCN1A-203ENST00000409050 KLHL30-AS1Q8NEE0 82 aa4.87□□□□□ -1.63
SCN1A-203ENST00000409050 SCN2AQ99250 2005 aa4.87□□□□□ -1.63
SCN1A-203ENST00000409050 TMEM105Q8N8V8 129 aa4.87□□□□□ -1.63
SCN1A-203ENST00000409050 CARD19Q96LW7 228 aa4.87□□□□□ -1.63
SCN1A-203ENST00000409050 TSSC4Q9Y5U2 329 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-203ENST00000409050 IGLC7A0M8Q6 106 aa4.87□□□□□ -1.63
SCN1A-203ENST00000409050 H3BT86 120 aa4.87□□□□□ -1.63
SCN1A-203ENST00000409050 TCF15Q12870 199 aa4.87□□□□□ -1.63
SCN1A-203ENST00000409050 Q8TAT8 98 aa4.87□□□□□ -1.63
SCN1A-203ENST00000409050 KNTC1P50748 2209 aa4.87□□□□□ -1.63
SCN1A-203ENST00000409050 SCN8AQ9UQD0 1980 aa4.87□□□□□ -1.63
SCN1A-203ENST00000409050 IGKV1-6A0A0C4DH72 117 aa4.87□□□□□ -1.63
SCN1A-203ENST00000409050 CRLF1O75462 422 aa4.87□□□□□ -1.63
SCN1A-203ENST00000409050 IGLC1P0CG04 106 aa4.87□□□□□ -1.63
SCN1A-203ENST00000409050 FOXG1P55316 489 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-203ENST00000409050 DEFB131AP59861 70 aa4.87□□□□□ -1.63
SCN1A-203ENST00000409050 C12orf74Q32Q52 190 aa4.87□□□□□ -1.63
SCN1A-203ENST00000409050 Q6ZWC4 215 aa4.87□□□□□ -1.63
SCN1A-203ENST00000409050 FXYD5Q96DB9 178 aa4.87□□□□□ -1.63
SCN1A-203ENST00000409050 ZNF747Q9BV97 191 aa4.87□□□□□ -1.63
SCN1A-203ENST00000409050 CASP8AP2Q9UKL3 1982 aa4.87□□□□□ -1.63
SCN1A-203ENST00000409050 IGHV3-64A0A075B6Q5 118 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms