RNA–Protein interactions for RNA: ENST00000364739.1

RNU4-28P-201, Transcript of RNA, U4 small nuclear 28, pseudogene, humanhuman

BASIC

Gene RNU4-28P, Length 141 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-28P-201ENST00000364739 TCRBP04435 133 aa-0.63□□□□□ -2.51
RNU4-28P-201ENST00000364739 LSM6P62312 80 aaKnown RBP-0.63□□□□□ -2.51
RNU4-28P-201ENST00000364739 ASB16-AS1Q495Z4 193 aa-0.63□□□□□ -2.51
RNU4-28P-201ENST00000364739 TMEM97Q5BJF2 176 aa-0.63□□□□□ -2.51
RNU4-28P-201ENST00000364739 OR4K15Q8NH41 348 aa-0.63□□□□□ -2.51
RNU4-28P-201ENST00000364739 RMND5BQ96G75 393 aaPredicted RBP-0.63□□□□□ -2.51
RNU4-28P-201ENST00000364739 HYLS1Q96M11 299 aa-0.63□□□□□ -2.51
RNU4-28P-201ENST00000364739 COL6A3P12111 3177 aa-0.63□□□□□ -2.51
RNU4-28P-201ENST00000364739 CEP164Q9UPV0 1460 aa-0.63□□□□□ -2.51
RNU4-28P-201ENST00000364739 FASNP49327 2511 aaKnown RBP-0.63□□□□□ -2.51
RNU4-28P-201ENST00000364739 POLQO75417 2590 aa-0.64□□□□□ -2.51
RNU4-28P-201ENST00000364739 RBBP6Q7Z6E9 1792 aaKnown RBP-0.64□□□□□ -2.51
RNU4-28P-201ENST00000364739 TRAV27A0A087WT01 109 aa-0.64□□□□□ -2.51
RNU4-28P-201ENST00000364739 SMIM23A6NLE4 172 aa-0.64□□□□□ -2.51
RNU4-28P-201ENST00000364739 C10orf142B7Z368 130 aa-0.64□□□□□ -2.51
RNU4-28P-201ENST00000364739 RPP14O95059 124 aaKnown RBP-0.64□□□□□ -2.51
RNU4-28P-201ENST00000364739 OTUD6BQ8N6M0 293 aa-0.64□□□□□ -2.51
RNU4-28P-201ENST00000364739 BOKQ9UMX3 212 aaPredicted RBP-0.64□□□□□ -2.51
RNU4-28P-201ENST00000364739 MXRA5Q9NR99 2828 aa-0.64□□□□□ -2.51
RNU4-28P-201ENST00000364739 TNRC18O15417 2968 aaPredicted RBP-0.64□□□□□ -2.51
RNU4-28P-201ENST00000364739 PTPN13Q12923 2485 aa-0.64□□□□□ -2.51
RNU4-28P-201ENST00000364739 WNK2Q9Y3S1 2297 aa-0.64□□□□□ -2.51
RNU4-28P-201ENST00000364739 DCHS2Q6V1P9 2916 aa-0.65□□□□□ -2.51
RNU4-28P-201ENST00000364739 MAP1AP78559 2803 aaPredicted RBP-0.65□□□□□ -2.51
RNU4-28P-201ENST00000364739 JMJD1CQ15652 2540 aa-0.65□□□□□ -2.51
RNU4-28P-201ENST00000364739 GGCTO75223 188 aaKnown RBP-0.65□□□□□ -2.51
RNU4-28P-201ENST00000364739 VBP1P61758 197 aa-0.65□□□□□ -2.51
RNU4-28P-201ENST00000364739 GNPDA2Q8TDQ7 276 aa-0.65□□□□□ -2.51
RNU4-28P-201ENST00000364739 FLNBO75369 2602 aaKnown RBP-0.65□□□□□ -2.51
RNU4-28P-201ENST00000364739 KDM6BO15054 1643 aa-0.65□□□□□ -2.51
RNU4-28P-201ENST00000364739 APC2O95996 2303 aa-0.65□□□□□ -2.51
RNU4-28P-201ENST00000364739 NBPF19A0A087WUL8 3843 aa-0.65□□□□□ -2.51
RNU4-28P-201ENST00000364739 FLGP20930 4061 aaPredicted RBP-0.65□□□□□ -2.51
RNU4-28P-201ENST00000364739 RIF1Q5UIP0 2472 aaKnown RBP-0.65□□□□□ -2.51
RNU4-28P-201ENST00000364739 F8P00451 2351 aa-0.65□□□□□ -2.51
RNU4-28P-201ENST00000364739 RBM3P98179 157 aaKnown RBP-0.66□□□□□ -2.52
RNU4-28P-201ENST00000364739 CASC2Q6XLA1 102 aa-0.66□□□□□ -2.52
RNU4-28P-201ENST00000364739 LRRC18Q8N456 261 aa-0.66□□□□□ -2.52
RNU4-28P-201ENST00000364739 CHD8Q9HCK8 2581 aa-0.66□□□□□ -2.52
RNU4-28P-201ENST00000364739 MYCBP2O75592 4640 aa-0.67□□□□□ -2.52
RNU4-28P-201ENST00000364739 PTPRQQ9UMZ3 2332 aa-0.67□□□□□ -2.52
RNU4-28P-201ENST00000364739 HAND1O96004 215 aa-0.67□□□□□ -2.52
RNU4-28P-201ENST00000364739 C10orf99Q6UWK7 81 aa-0.67□□□□□ -2.52
RNU4-28P-201ENST00000364739 SIGMAR1Q99720 223 aa-0.67□□□□□ -2.52
RNU4-28P-201ENST00000364739 IMUPQ9GZP8 106 aa-0.67□□□□□ -2.52
RNU4-28P-201ENST00000364739 PARVBQ9HBI1 364 aa-0.67□□□□□ -2.52
RNU4-28P-201ENST00000364739 A0A096LPI6 279 aa-0.68□□□□□ -2.52
RNU4-28P-201ENST00000364739 hDV103S1A0JD37 113 aa-0.68□□□□□ -2.52
RNU4-28P-201ENST00000364739 SPINK1P00995 79 aa-0.68□□□□□ -2.52
RNU4-28P-201ENST00000364739 CRHP06850 196 aa-0.68□□□□□ -2.52
RNU4-28P-201ENST00000364739 CELSR2Q9HCU4 2923 aa-0.68□□□□□ -2.52
RNU4-28P-201ENST00000364739 PIEZO2Q9H5I5 2752 aa-0.68□□□□□ -2.52
RNU4-28P-201ENST00000364739 ADCY9O60503 1353 aa-0.69□□□□□ -2.52
RNU4-28P-201ENST00000364739 HMGB3O15347 200 aaKnown RBP-0.69□□□□□ -2.52
RNU4-28P-201ENST00000364739 IFNA7P01567 189 aa-0.69□□□□□ -2.52
RNU4-28P-201ENST00000364739 ZHX1-C8orf76Q96EF9 292 aa-0.69□□□□□ -2.52
RNU4-28P-201ENST00000364739 TEX37Q96LM6 180 aa-0.69□□□□□ -2.52
RNU4-28P-201ENST00000364739 ZNF714Q96N38 554 aa-0.69□□□□□ -2.52
RNU4-28P-201ENST00000364739 MAP1BP46821 2468 aaKnown RBP-0.69□□□□□ -2.52
RNU4-28P-201ENST00000364739 NCOR1O75376 2440 aa-0.69□□□□□ -2.52
RNU4-28P-201ENST00000364739 CCDC168Q8NDH2 2452 aa-0.7□□□□□ -2.52
RNU4-28P-201ENST00000364739 PRRC2CQ9Y520 2896 aaKnown RBP-0.7□□□□□ -2.52
RNU4-28P-201ENST00000364739 LAMA1P25391 3075 aa-0.7□□□□□ -2.52
RNU4-28P-201ENST00000364739 FAM159BA6NKW6 160 aa-0.7□□□□□ -2.52
RNU4-28P-201ENST00000364739 K7ERJ3 54 aa-0.7□□□□□ -2.52
RNU4-28P-201ENST00000364739 MYL6P60660 151 aa-0.7□□□□□ -2.52
RNU4-28P-201ENST00000364739 MIR22HGQ0VDD5 57 aa-0.7□□□□□ -2.52
RNU4-28P-201ENST00000364739 KLRD1Q13241 179 aa-0.7□□□□□ -2.52
RNU4-28P-201ENST00000364739 FOXI2Q6ZQN5 318 aa-0.7□□□□□ -2.52
RNU4-28P-201ENST00000364739 CTTNBP2Q8WZ74 1663 aa-0.7□□□□□ -2.52
RNU4-28P-201ENST00000364739 ANKRD11Q6UB99 2663 aaPredicted RBP-0.71□□□□□ -2.52
RNU4-28P-201ENST00000364739 LAMA3Q16787 3333 aa-0.71□□□□□ -2.52
RNU4-28P-201ENST00000364739 CHD6Q8TD26 2715 aa-0.71□□□□□ -2.52
RNU4-28P-201ENST00000364739 AKAP13Q12802 2813 aa-0.71□□□□□ -2.52
RNU4-28P-201ENST00000364739 ODAMA1E959 279 aa-0.71□□□□□ -2.52
RNU4-28P-201ENST00000364739 BANF1O75531 89 aa-0.71□□□□□ -2.52
RNU4-28P-201ENST00000364739 CXCL1P09341 107 aa-0.71□□□□□ -2.52
RNU4-28P-201ENST00000364739 PDE6GP18545 87 aa-0.71□□□□□ -2.52
RNU4-28P-201ENST00000364739 SPRR2DP22532 72 aa-0.71□□□□□ -2.52
RNU4-28P-201ENST00000364739 NFYBP25208 207 aa-0.71□□□□□ -2.52
RNU4-28P-201ENST00000364739 CEBPGP53567 150 aa-0.71□□□□□ -2.52
RNU4-28P-201ENST00000364739 CAV3P56539 151 aa-0.71□□□□□ -2.52
RNU4-28P-201ENST00000364739 TAF1AQ15573 450 aaPredicted RBP-0.71□□□□□ -2.52
RNU4-28P-201ENST00000364739 PTRHD1Q6GMV3 140 aaKnown RBP-0.71□□□□□ -2.52
RNU4-28P-201ENST00000364739 LINC00299Q6ZSB3 139 aa-0.71□□□□□ -2.52
RNU4-28P-201ENST00000364739 MALSU1Q96EH3 234 aa-0.71□□□□□ -2.52
RNU4-28P-201ENST00000364739 ARL5BQ96KC2 179 aa-0.71□□□□□ -2.52
RNU4-28P-201ENST00000364739 POPDC3Q9HBV1 291 aa-0.71□□□□□ -2.52
RNU4-28P-201ENST00000364739 U3KQA8 63 aa-0.71□□□□□ -2.52
RNU4-28P-201ENST00000364739 CUBNO60494 3623 aa-0.71□□□□□ -2.52
RNU4-28P-201ENST00000364739 CSMD3Q7Z407 3707 aa-0.71□□□□□ -2.52
RNU4-28P-201ENST00000364739 MGAM2Q2M2H8 2515 aa-0.71□□□□□ -2.52
RNU4-28P-201ENST00000364739 ATG2AQ2TAZ0 1938 aa-0.72□□□□□ -2.52
RNU4-28P-201ENST00000364739 PLECQ15149 4684 aaKnown RBP-0.72□□□□□ -2.52
RNU4-28P-201ENST00000364739 AHCTF1Q8WYP5 2266 aa-0.72□□□□□ -2.52
RNU4-28P-201ENST00000364739 DUXBA0A1W2PPF3 345 aa-0.72□□□□□ -2.52
RNU4-28P-201ENST00000364739 ARPP19P56211 112 aa-0.72□□□□□ -2.52
RNU4-28P-201ENST00000364739 ITGB3BPQ13352 177 aaPredicted RBP-0.72□□□□□ -2.52
RNU4-28P-201ENST00000364739 Q5BKY6 102 aa-0.72□□□□□ -2.52
RNU4-28P-201ENST00000364739 GOLT1AQ6ZVE7 132 aa-0.72□□□□□ -2.52
Retrieved 100 of 20,778 RNA–protein pairs in 206.9 ms