RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 PDE6HQ13956 83 aa3.15□□□□□ -1.91
MCF2-201ENST00000338585 FAM106AQ4KMX7 169 aa3.15□□□□□ -1.91
MCF2-201ENST00000338585 C1orf194Q5T5A4 169 aa3.15□□□□□ -1.91
MCF2-201ENST00000338585 C8orf86Q6ZUL3 223 aa3.15□□□□□ -1.91
MCF2-201ENST00000338585 FAM24BQ8N5W8 94 aa3.15□□□□□ -1.91
MCF2-201ENST00000338585 KLHL30-AS1Q8NEE0 82 aa3.15□□□□□ -1.91
MCF2-201ENST00000338585 HIST1H2BAQ96A08 127 aa3.15□□□□□ -1.91
MCF2-201ENST00000338585 RHPN1-AS1Q9BWJ2 59 aa3.15□□□□□ -1.91
MCF2-201ENST00000338585 C16orf95Q9H693 158 aa3.15□□□□□ -1.91
MCF2-201ENST00000338585 SMPXQ9UHP9 88 aa3.15□□□□□ -1.91
MCF2-201ENST00000338585 RNF24Q9Y225 148 aa3.15□□□□□ -1.91
MCF2-201ENST00000338585 TRAV8-2A0A0B4J237 113 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 COLCA2A8K830 154 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 B4DEV8 164 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 PRAC2D3DTV9 90 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 CHEK1O14757 476 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 CRLF1O75462 422 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 UBE2G1P62253 170 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 TMEM183BQ1AE95 376 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 Q86TA4 180 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 BAGE2Q86Y30 109 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 LYPD1Q8N2G4 141 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 OR11H1Q8NG94 326 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 C4orf3Q8WVX3 66 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 YPEL4Q96NS1 127 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 CLUHP3Q96NS8 147 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 GPR82Q96P67 336 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 CITED2Q99967 270 aaPredicted RBP3.14□□□□□ -1.91
MCF2-201ENST00000338585 RNASE7Q9H1E1 156 aaKnown RBP3.14□□□□□ -1.91
MCF2-201ENST00000338585 AAMDCQ9H7C9 122 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 KLF12Q9Y4X4 402 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 C2CD3Q4AC94 2353 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 TGIF2-C20orf24A0A0A6YYL0 155 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 DIRC3C9JPN6 131 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 H7BYZ3 331 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 K7EMT4 169 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 TCF21O43680 179 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 MT-ND4LP03901 98 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 CXCL1P09341 107 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 S100A7P31151 101 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 TAS2R60P59551 318 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 DEFB1P60022 68 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 RPL11P62913 178 aaKnown RBP3.14□□□□□ -1.91
MCF2-201ENST00000338585 PSG9Q00887 426 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 PRR27Q6MZM9 219 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 ADAMTSL5Q6ZMM2 481 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 LINC00322Q6ZN03 302 aaPredicted RBP3.14□□□□□ -1.91
MCF2-201ENST00000338585 PRNTQ86SH4 94 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 GBGT1Q8N5D6 347 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 OR1N2Q8NGR9 330 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 SFRP2Q96HF1 295 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 C20orf173Q96LM9 149 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 TCEAL7Q9BRU2 100 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 UFC1Q9Y3C8 167 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 RNF114Q9Y508 228 aa3.14□□□□□ -1.91
MCF2-201ENST00000338585 LINC01619G3V211 115 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 EREGO14944 169 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 ZNF253O75346 499 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 NDUFA7O95182 113 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 GCGP01275 180 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 LTAP01374 205 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 PROK1P58294 105 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 KRTAP10-3P60369 221 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 ERCC8Q13216 396 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 KLF5Q13887 457 aaPredicted RBP3.13□□□□□ -1.91
MCF2-201ENST00000338585 ELOBQ15370 118 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 LCN12Q6JVE5 192 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 TCF24Q7RTU0 167 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 REC114Q7Z4M0 266 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 C1QL4Q86Z23 238 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 OR10G8Q8NGN5 311 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 Q8TAT8 98 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 DLX4Q92988 240 aaPredicted RBP3.13□□□□□ -1.91
MCF2-201ENST00000338585 GRAMD2BQ96HH9 432 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 FMC1Q96HJ9 113 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 RAX2Q96IS3 184 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 JMJD8Q96S16 334 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 VGLL1Q99990 258 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 TUBA4BQ9H853 241 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 LY96Q9Y6Y9 160 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 WNK1Q9H4A3 2382 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 A0A1W2PS18 150 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 C2orf70A6NJV1 201 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 A8MWP6 167 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 LGALS9O00182 355 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 SOCS3O14543 225 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 CA1P00915 261 aaPredicted RBP3.13□□□□□ -1.91
MCF2-201ENST00000338585 PFN1P07737 140 aaKnown RBP3.13□□□□□ -1.91
MCF2-201ENST00000338585 ZNF705DP0CH99 300 aaPredicted RBP3.13□□□□□ -1.91
MCF2-201ENST00000338585 ZNF705BP0CI00 300 aaPredicted RBP3.13□□□□□ -1.91
MCF2-201ENST00000338585 CBLN1P23435 193 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 CSN1S1P47710 185 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 TFPI2P48307 235 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 FAM3BP58499 235 aaPredicted RBP3.13□□□□□ -1.91
MCF2-201ENST00000338585 ERVFC1-1P60608 527 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 FLI1Q01543 452 aaPredicted RBP3.13□□□□□ -1.91
MCF2-201ENST00000338585 PSG3Q16557 428 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 WFDC3Q8IUB2 231 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 C15orf54Q8N8G6 183 aa3.13□□□□□ -1.91
MCF2-201ENST00000338585 DPF1Q92782 380 aa3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 579.8 ms