RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 Q8TAT8 98 aa11.52□□□□□ -0.56
CLCNKA-201ENST00000331433 IGHV3OR16-13A0A075B7E8 117 aa11.52□□□□□ -0.57
CLCNKA-201ENST00000331433 IGHV3-74A0A0B4J1X5 117 aa11.52□□□□□ -0.57
CLCNKA-201ENST00000331433 M0R2Z0 102 aa11.52□□□□□ -0.57
CLCNKA-201ENST00000331433 IGHG4P01861 327 aa11.52□□□□□ -0.57
CLCNKA-201ENST00000331433 BORCS7Q96B45 105 aa11.52□□□□□ -0.57
CLCNKA-201ENST00000331433 TMSB15BA0A087X1C1 80 aa11.51□□□□□ -0.57
CLCNKA-201ENST00000331433 LOC102724200A0A096LPH7 203 aaPredicted RBP11.51□□□□□ -0.57
CLCNKA-201ENST00000331433 IGHV1-69DA0A0B4J2H0 117 aa11.51□□□□□ -0.57
CLCNKA-201ENST00000331433 A0A1B0GUT8 65 aa11.51□□□□□ -0.57
CLCNKA-201ENST00000331433 A0A1B0GV90 55 aa11.51□□□□□ -0.57
CLCNKA-201ENST00000331433 EREGO14944 169 aa11.51□□□□□ -0.57
CLCNKA-201ENST00000331433 IGHV1-69P01742 117 aa11.51□□□□□ -0.57
CLCNKA-201ENST00000331433 RNF224P0DH78 156 aa11.51□□□□□ -0.57
CLCNKA-201ENST00000331433 PMCHL1Q16048 86 aa11.51□□□□□ -0.57
CLCNKA-201ENST00000331433 VGLL1Q99990 258 aa11.51□□□□□ -0.57
CLCNKA-201ENST00000331433 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.51□□□□□ -0.57
CLCNKA-201ENST00000331433 RELQ04864 619 aaPredicted RBP11.51□□□□□ -0.57
CLCNKA-201ENST00000331433 KLK9Q2XQG4 91 aa11.51□□□□□ -0.57
CLCNKA-201ENST00000331433 PIFOQ8TCI5 191 aa11.51□□□□□ -0.57
CLCNKA-201ENST00000331433 C10orf105Q8TEF2 133 aa11.51□□□□□ -0.57
CLCNKA-201ENST00000331433 KLK9Q9UKQ9 250 aa11.51□□□□□ -0.57
CLCNKA-201ENST00000331433 FAM181BA6NEQ2 426 aa11.5□□□□□ -0.57
CLCNKA-201ENST00000331433 IGHV4-38-2P0DP08 117 aa11.5□□□□□ -0.57
CLCNKA-201ENST00000331433 SSTP61278 116 aa11.5□□□□□ -0.57
CLCNKA-201ENST00000331433 C20orf144Q9BQM9 153 aa11.5□□□□□ -0.57
CLCNKA-201ENST00000331433 MOB4Q9Y3A3 225 aa11.5□□□□□ -0.57
CLCNKA-201ENST00000331433 IGHV3-49A0A0A0MS15 119 aa11.5□□□□□ -0.57
CLCNKA-201ENST00000331433 CLPSL1A2RUU4 121 aa11.5□□□□□ -0.57
CLCNKA-201ENST00000331433 BUB3O43684 328 aa11.5□□□□□ -0.57
CLCNKA-201ENST00000331433 SH2D1AO60880 128 aa11.5□□□□□ -0.57
CLCNKA-201ENST00000331433 ATP5J2P56134 94 aa11.5□□□□□ -0.57
CLCNKA-201ENST00000331433 LCN12Q6JVE5 192 aa11.5□□□□□ -0.57
CLCNKA-201ENST00000331433 IGHV4-30-2A0A087WSY4 118 aa11.49□□□□□ -0.57
CLCNKA-201ENST00000331433 SERTM2A0A1B0GWG4 89 aa11.49□□□□□ -0.57
CLCNKA-201ENST00000331433 ZNF207O43670 478 aaKnown RBP11.49□□□□□ -0.57
CLCNKA-201ENST00000331433 EBLN2Q6P2I7 272 aa11.49□□□□□ -0.57
CLCNKA-201ENST00000331433 EEF1AKMT3Q96AZ1 226 aa11.49□□□□□ -0.57
CLCNKA-201ENST00000331433 PRR25Q96S07 402 aa11.49□□□□□ -0.57
CLCNKA-201ENST00000331433 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.49□□□□□ -0.57
CLCNKA-201ENST00000331433 GOSR1O95249 250 aa11.49□□□□□ -0.57
CLCNKA-201ENST00000331433 ZNF705AQ6ZN79 300 aaPredicted RBP11.49□□□□□ -0.57
CLCNKA-201ENST00000331433 RNF182Q8N6D2 247 aa11.49□□□□□ -0.57
CLCNKA-201ENST00000331433 ZNF138P52744 262 aa11.48□□□□□ -0.57
CLCNKA-201ENST00000331433 RIGQ13278 110 aa11.48□□□□□ -0.57
CLCNKA-201ENST00000331433 FAM162BQ5T6X4 162 aa11.48□□□□□ -0.57
CLCNKA-201ENST00000331433 CLEC2AQ6UVW9 174 aa11.48□□□□□ -0.57
CLCNKA-201ENST00000331433 ATOH7Q8N100 152 aa11.48□□□□□ -0.57
CLCNKA-201ENST00000331433 SNHG12Q9BXW3 62 aa11.48□□□□□ -0.57
CLCNKA-201ENST00000331433 CLEC5AQ9NY25 188 aa11.48□□□□□ -0.57
CLCNKA-201ENST00000331433 CSPG4Q6UVK1 2322 aa11.48□□□□□ -0.57
CLCNKA-201ENST00000331433 TRAV41A0A0B4J266 112 aa11.48□□□□□ -0.57
CLCNKA-201ENST00000331433 TMEM189A5PLL7 270 aa11.48□□□□□ -0.57
CLCNKA-201ENST00000331433 ZNF80P51504 273 aaPredicted RBP11.48□□□□□ -0.57
CLCNKA-201ENST00000331433 LY6EQ16553 131 aa11.48□□□□□ -0.57
CLCNKA-201ENST00000331433 C2orf88Q9BSF0 95 aa11.48□□□□□ -0.57
CLCNKA-201ENST00000331433 NDFIP1Q9BT67 221 aa11.48□□□□□ -0.57
CLCNKA-201ENST00000331433 MUC21A0A0G2JKD1 596 aa11.47□□□□□ -0.57
CLCNKA-201ENST00000331433 MUC21A0A140T8X8 626 aa11.47□□□□□ -0.57
CLCNKA-201ENST00000331433 PRAC2D3DTV9 90 aa11.47□□□□□ -0.57
CLCNKA-201ENST00000331433 MUC21Q5SSG8 566 aa11.47□□□□□ -0.57
CLCNKA-201ENST00000331433 SAPCD1Q5SSQ6 148 aa11.47□□□□□ -0.57
CLCNKA-201ENST00000331433 MIEN1Q9BRT3 115 aa11.47□□□□□ -0.57
CLCNKA-201ENST00000331433 TRBV7-1A0A0A6YYK4 115 aa11.47□□□□□ -0.57
CLCNKA-201ENST00000331433 S100A7P31151 101 aa11.47□□□□□ -0.57
CLCNKA-201ENST00000331433 ATP5G2Q06055 141 aa11.47□□□□□ -0.57
CLCNKA-201ENST00000331433 ERCC8Q13216 396 aa11.47□□□□□ -0.57
CLCNKA-201ENST00000331433 LYZL1Q6UWQ5 148 aa11.47□□□□□ -0.57
CLCNKA-201ENST00000331433 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.47□□□□□ -0.57
CLCNKA-201ENST00000331433 IGHV1-24A0A0C4DH33 117 aa11.46□□□□□ -0.57
CLCNKA-201ENST00000331433 TMEM8BA6NDV4 472 aa11.46□□□□□ -0.57
CLCNKA-201ENST00000331433 C2orf70A6NJV1 201 aa11.46□□□□□ -0.57
CLCNKA-201ENST00000331433 SPATA45Q537H7 98 aa11.46□□□□□ -0.57
CLCNKA-201ENST00000331433 NRGNQ92686 78 aa11.46□□□□□ -0.57
CLCNKA-201ENST00000331433 FAM208BQ5VWN6 2430 aa11.46□□□□□ -0.58
CLCNKA-201ENST00000331433 CSN3P07498 182 aa11.46□□□□□ -0.58
CLCNKA-201ENST00000331433 CTRLP40313 264 aa11.46□□□□□ -0.58
CLCNKA-201ENST00000331433 C19orf54Q5BKX5 351 aa11.46□□□□□ -0.58
CLCNKA-201ENST00000331433 Q6AWC8 147 aa11.46□□□□□ -0.58
CLCNKA-201ENST00000331433 ARL6IP6Q8N6S5 226 aa11.46□□□□□ -0.58
CLCNKA-201ENST00000331433 CENPEQ02224 2701 aa11.45□□□□□ -0.58
CLCNKA-201ENST00000331433 TMEM213A2RRL7 107 aa11.45□□□□□ -0.58
CLCNKA-201ENST00000331433 NDUFS8O00217 210 aa11.45□□□□□ -0.58
CLCNKA-201ENST00000331433 LINC00614P0C842 121 aa11.45□□□□□ -0.58
CLCNKA-201ENST00000331433 MAJINQ3KP22 176 aa11.45□□□□□ -0.58
CLCNKA-201ENST00000331433 LBHQ53QV2 105 aaPredicted RBP11.45□□□□□ -0.58
CLCNKA-201ENST00000331433 COX8CQ7Z4L0 72 aa11.45□□□□□ -0.58
CLCNKA-201ENST00000331433 A0A087X0K7 114 aa11.45□□□□□ -0.58
CLCNKA-201ENST00000331433 TRGV3P03979 118 aa11.45□□□□□ -0.58
CLCNKA-201ENST00000331433 BTF3P20290 206 aaKnown RBP11.45□□□□□ -0.58
CLCNKA-201ENST00000331433 RAB9AP51151 201 aa11.45□□□□□ -0.58
CLCNKA-201ENST00000331433 LINC00173Q6ZV60 143 aa11.45□□□□□ -0.58
CLCNKA-201ENST00000331433 SPATA12Q7Z6I5 190 aa11.45□□□□□ -0.58
CLCNKA-201ENST00000331433 CHCHD1Q96BP2 118 aaKnown RBP11.45□□□□□ -0.58
CLCNKA-201ENST00000331433 METTL26Q96S19 204 aa11.45□□□□□ -0.58
CLCNKA-201ENST00000331433 MEGF9Q9H1U4 602 aa11.45□□□□□ -0.58
CLCNKA-201ENST00000331433 ZMAT5Q9UDW3 170 aaKnown RBP11.45□□□□□ -0.58
CLCNKA-201ENST00000331433 USP9YO00507 2555 aaPredicted RBP11.45□□□□□ -0.58
CLCNKA-201ENST00000331433 H3BUX3 64 aa11.44□□□□□ -0.58
CLCNKA-201ENST00000331433 RAB4AP20338 218 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms