RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 ERCC8Q13216 396 aa8.91□□□□□ -0.98
CUX1-202ENST00000292538 GNB1LQ9BYB4 327 aa8.91□□□□□ -0.98
CUX1-202ENST00000292538 ACANP16112 2415 aa8.9□□□□□ -0.98
CUX1-202ENST00000292538 IGHV4-59P01825 116 aa8.9□□□□□ -0.98
CUX1-202ENST00000292538 GDF5OSQ5U4N7 250 aa8.9□□□□□ -0.98
CUX1-202ENST00000292538 GTSF1Q8WW33 167 aa8.9□□□□□ -0.98
CUX1-202ENST00000292538 MLST8Q9BVC4 326 aa8.9□□□□□ -0.98
CUX1-202ENST00000292538 SMAD5-AS1Q9Y6J3 95 aa8.9□□□□□ -0.98
CUX1-202ENST00000292538 CT45A10P0DMU9 189 aa8.9□□□□□ -0.99
CUX1-202ENST00000292538 PSG3Q16557 428 aa8.9□□□□□ -0.99
CUX1-202ENST00000292538 WDR73Q6P4I2 378 aa8.9□□□□□ -0.99
CUX1-202ENST00000292538 FAM19A2Q8N3H0 131 aa8.9□□□□□ -0.99
CUX1-202ENST00000292538 VN1R17PQ8TDU5 208 aa8.9□□□□□ -0.99
CUX1-202ENST00000292538 RCHY1Q96PM5 261 aa8.9□□□□□ -0.99
CUX1-202ENST00000292538 VGLL1Q99990 258 aa8.9□□□□□ -0.99
CUX1-202ENST00000292538 RNF24Q9Y225 148 aa8.9□□□□□ -0.99
CUX1-202ENST00000292538 A8MWL6 223 aa8.89□□□□□ -0.99
CUX1-202ENST00000292538 MRPS12O15235 138 aaKnown RBP8.89□□□□□ -0.99
CUX1-202ENST00000292538 ZNF705DP0CH99 300 aaPredicted RBP8.89□□□□□ -0.99
CUX1-202ENST00000292538 ZNF705BP0CI00 300 aaPredicted RBP8.89□□□□□ -0.99
CUX1-202ENST00000292538 DEFB112Q30KQ8 113 aa8.89□□□□□ -0.99
CUX1-202ENST00000292538 TP53TG3Q9ULZ0 132 aa8.89□□□□□ -0.99
CUX1-202ENST00000292538 CHEK1O14757 476 aa8.89□□□□□ -0.99
CUX1-202ENST00000292538 ARL3P36405 182 aa8.89□□□□□ -0.99
CUX1-202ENST00000292538 TRAV20A0A0B4J274 112 aa8.88□□□□□ -0.99
CUX1-202ENST00000292538 M0QZ24 198 aa8.88□□□□□ -0.99
CUX1-202ENST00000292538 PAX1P15863 534 aa8.88□□□□□ -0.99
CUX1-202ENST00000292538 SRD5A1P18405 259 aa8.88□□□□□ -0.99
CUX1-202ENST00000292538 METTL26Q96S19 204 aa8.88□□□□□ -0.99
CUX1-202ENST00000292538 POLR3KQ9Y2Y1 108 aaPredicted RBP8.88□□□□□ -0.99
CUX1-202ENST00000292538 APCP25054 2843 aa8.88□□□□□ -0.99
CUX1-202ENST00000292538 TRAV9-1A0A075B6T8 112 aa8.88□□□□□ -0.99
CUX1-202ENST00000292538 TRBV9A0A0B4J1U6 114 aa8.88□□□□□ -0.99
CUX1-202ENST00000292538 PRAC2D3DTV9 90 aa8.88□□□□□ -0.99
CUX1-202ENST00000292538 C10orf99Q6UWK7 81 aa8.88□□□□□ -0.99
CUX1-202ENST00000292538 UNQ9165/PRO28630Q6UXU0 137 aa8.88□□□□□ -0.99
CUX1-202ENST00000292538 FAM231DQ6ZW35 169 aa8.88□□□□□ -0.99
CUX1-202ENST00000292538 HELZ2Q9BYK8 2649 aaKnown RBP8.88□□□□□ -0.99
CUX1-202ENST00000292538 HLA-DQA1P01909 254 aa8.87□□□□□ -0.99
CUX1-202ENST00000292538 ODF1Q14990 250 aa8.87□□□□□ -0.99
CUX1-202ENST00000292538 LINC01356Q8N9X3 169 aa8.87□□□□□ -0.99
CUX1-202ENST00000292538 MBD6Q96DN6 1003 aa8.87□□□□□ -0.99
CUX1-202ENST00000292538 ZNF469Q96JG9 3925 aaPredicted RBP8.87□□□□□ -0.99
CUX1-202ENST00000292538 BUB3O43684 328 aa8.87□□□□□ -0.99
CUX1-202ENST00000292538 AMTP48728 403 aa8.87□□□□□ -0.99
CUX1-202ENST00000292538 KRTDAPP60985 99 aa8.87□□□□□ -0.99
CUX1-202ENST00000292538 PSG9Q00887 426 aa8.87□□□□□ -0.99
CUX1-202ENST00000292538 LCN12Q6JVE5 192 aa8.87□□□□□ -0.99
CUX1-202ENST00000292538 TMEM75Q8N9X5 138 aa8.87□□□□□ -0.99
CUX1-202ENST00000292538 TXN2Q99757 166 aa8.87□□□□□ -0.99
CUX1-202ENST00000292538 MEGF9Q9H1U4 602 aa8.87□□□□□ -0.99
CUX1-202ENST00000292538 TRBV7-1A0A0A6YYK4 115 aa8.87□□□□□ -0.99
CUX1-202ENST00000292538 SERTM2A0A1B0GWG4 89 aa8.87□□□□□ -0.99
CUX1-202ENST00000292538 SMAD7O15105 426 aaKnown RBP8.87□□□□□ -0.99
CUX1-202ENST00000292538 CRIP1P50238 77 aa8.87□□□□□ -0.99
CUX1-202ENST00000292538 DEFB1P60022 68 aa8.87□□□□□ -0.99
CUX1-202ENST00000292538 COA6Q5JTJ3 125 aaKnown RBP8.87□□□□□ -0.99
CUX1-202ENST00000292538 FAM209BQ5JX69 171 aa8.87□□□□□ -0.99
CUX1-202ENST00000292538 IL17RELQ6ZVW7 336 aa8.87□□□□□ -0.99
CUX1-202ENST00000292538 SIGLECL1Q8N7X8 197 aa8.87□□□□□ -0.99
CUX1-202ENST00000292538 MTORP42345 2549 aa8.86□□□□□ -0.99
CUX1-202ENST00000292538 MT-ND6P03923 174 aa8.86□□□□□ -0.99
CUX1-202ENST00000292538 CSN3P07498 182 aa8.86□□□□□ -0.99
CUX1-202ENST00000292538 HBBP68871 147 aa8.86□□□□□ -0.99
CUX1-202ENST00000292538 RNASEKQ6P5S7 137 aaKnown RBP8.86□□□□□ -0.99
CUX1-202ENST00000292538 ZNF48Q96MX3 618 aaPredicted RBP8.86□□□□□ -0.99
CUX1-202ENST00000292538 ZFAND3Q9H8U3 227 aa8.86□□□□□ -0.99
CUX1-202ENST00000292538 CLPSL1A2RUU4 121 aa8.86□□□□□ -0.99
CUX1-202ENST00000292538 C19orf71A6NCJ1 209 aa8.86□□□□□ -0.99
CUX1-202ENST00000292538 ORM1P02763 201 aa8.86□□□□□ -0.99
CUX1-202ENST00000292538 PPIFP30405 207 aaKnown RBP8.86□□□□□ -0.99
CUX1-202ENST00000292538 LINC00310P59036 64 aa8.86□□□□□ -0.99
CUX1-202ENST00000292538 PMCHL1Q16048 86 aa8.86□□□□□ -0.99
CUX1-202ENST00000292538 Q5PR19 223 aa8.86□□□□□ -0.99
CUX1-202ENST00000292538 HIST2H2BDQ6DRA6 164 aa8.86□□□□□ -0.99
CUX1-202ENST00000292538 BEX4Q9NWD9 120 aaPredicted RBP8.86□□□□□ -0.99
CUX1-202ENST00000292538 TENM4Q6N022 2769 aa8.85□□□□□ -0.99
CUX1-202ENST00000292538 A6NDX4 124 aa8.85□□□□□ -0.99
CUX1-202ENST00000292538 ARMS2P0C7Q2 107 aa8.85□□□□□ -0.99
CUX1-202ENST00000292538 SLC25A16P16260 332 aa8.85□□□□□ -0.99
CUX1-202ENST00000292538 RBPMS2Q6ZRY4 209 aaKnown RBP8.85□□□□□ -0.99
CUX1-202ENST00000292538 LYPD1Q8N2G4 141 aa8.85□□□□□ -0.99
CUX1-202ENST00000292538 OR4X2Q8NGF9 303 aa8.85□□□□□ -0.99
CUX1-202ENST00000292538 Q96MF0 132 aa8.85□□□□□ -0.99
CUX1-202ENST00000292538 ZFP30Q9Y2G7 519 aa8.85□□□□□ -0.99
CUX1-202ENST00000292538 JOSD1Q15040 202 aaPredicted RBP8.85□□□□□ -0.99
CUX1-202ENST00000292538 WFDC3Q8IUB2 231 aa8.85□□□□□ -0.99
CUX1-202ENST00000292538 C16orf92Q96LL3 132 aa8.85□□□□□ -0.99
CUX1-202ENST00000292538 PRSS22Q9GZN4 317 aa8.85□□□□□ -0.99
CUX1-202ENST00000292538 ZNF138P52744 262 aa8.84□□□□□ -0.99
CUX1-202ENST00000292538 DSCR9P59020 149 aa8.84□□□□□ -0.99
CUX1-202ENST00000292538 PDE6HQ13956 83 aa8.84□□□□□ -0.99
CUX1-202ENST00000292538 SORL1Q92673 2214 aa8.84□□□□□ -0.99
CUX1-202ENST00000292538 TMEM189A5PLL7 270 aa8.84□□□□□ -0.99
CUX1-202ENST00000292538 PRDM13Q9H4Q3 707 aa8.84□□□□□ -0.99
CUX1-202ENST00000292538 SH2D1AO60880 128 aa8.84□□□□□ -0.99
CUX1-202ENST00000292538 TM4SF20Q53R12 229 aa8.84□□□□□ -0.99
CUX1-202ENST00000292538 Q6ZWC4 215 aa8.84□□□□□ -0.99
CUX1-202ENST00000292538 IGHG2P01859 326 aa8.83□□□□□ -1
CUX1-202ENST00000292538 EDN2P20800 178 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms