RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 CPS1P31327 1500 aa2.88□□□□□ -1.95
SCN1A-221ENST00000641996 SLC25A1P53007 311 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 COX8CQ7Z4L0 72 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 NKAPP1Q8N9T2 125 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 AQP3Q92482 292 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 SHPRHQ149N8 1683 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 USP6P35125 1406 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 FAM72CH0Y354 149 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 CHKB-CPT1BH3BT56 60 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 ZNHIT1O43257 154 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 FAM72AQ5TYM5 149 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 FAM72DQ6L9T8 149 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 FAM72BQ86X60 149 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 UBALD1Q8TB05 177 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 VSIG2Q96IQ7 327 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 A0A1W2PS18 150 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 NUPR1O60356 82 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 TMEM52Q8NDY8 209 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 CLEC7AQ9BXN2 247 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 DYNLRB1Q9NP97 96 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 IL17AQ16552 155 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 Q6ZS49 121 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 NTN5Q8WTR8 489 aaPredicted RBP2.87□□□□□ -1.95
SCN1A-221ENST00000641996 A2ML1A8K2U0 1454 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 MED14O60244 1454 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 COX8AP10176 69 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 ADARB2-AS1A8MUL3 147 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 ZNF73O43830 326 aaPredicted RBP2.87□□□□□ -1.95
SCN1A-221ENST00000641996 PSMG4Q5JS54 123 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 SLC22A18ASQ8N1D0 253 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 RPRMQ9NS64 109 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 KLK13Q9UKR3 277 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 SLC25A20O43772 301 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 ZIC1Q15915 447 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 ATP1A1-AS1Q5TC04 95 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 PIANPQ8IYJ0 282 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 TMEM61Q8N0U2 210 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 LINC00526Q96FQ7 95 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 COL22A1Q8NFW1 1626 aaPredicted RBP2.87□□□□□ -1.95
SCN1A-221ENST00000641996 CCL8P80075 99 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 C20orf204Q6ZNR8 217 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 CLECL1Q8IZS7 167 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 COX7CP15954 63 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 RPRMLQ8N4K4 120 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 FAM216BQ8N7L0 139 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 FGFBP3Q8TAT2 258 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 C4AP0C0L4 1744 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 C4BP0C0L5 1744 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 CD8AP01732 235 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 VSIG8P0DPA2 414 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 TIFABQ6ZNK6 161 aa2.87□□□□□ -1.95
SCN1A-221ENST00000641996 RUSC1-AS1Q66K80 236 aa2.86□□□□□ -1.95
SCN1A-221ENST00000641996 SHANK2-AS3Q9BTD1 123 aa2.86□□□□□ -1.95
SCN1A-221ENST00000641996 TMEM131LA2VDJ0 1609 aa2.86□□□□□ -1.95
SCN1A-221ENST00000641996 C6orf99Q4VX62 202 aa2.86□□□□□ -1.95
SCN1A-221ENST00000641996 LGALS9CQ6DKI2 356 aa2.86□□□□□ -1.95
SCN1A-221ENST00000641996 SMRP1Q8NCR6 262 aa2.86□□□□□ -1.95
SCN1A-221ENST00000641996 RNF7Q9UBF6 113 aa2.86□□□□□ -1.95
SCN1A-221ENST00000641996 ARHGEF28Q8N1W1 1705 aaKnown RBP2.86□□□□□ -1.95
SCN1A-221ENST00000641996 CCL20P78556 96 aa2.86□□□□□ -1.95
SCN1A-221ENST00000641996 UFSP1Q6NVU6 142 aa2.86□□□□□ -1.95
SCN1A-221ENST00000641996 CLTCQ00610 1675 aaKnown RBP2.86□□□□□ -1.95
SCN1A-221ENST00000641996 TARBP1Q13395 1621 aaKnown RBP2.86□□□□□ -1.95
SCN1A-221ENST00000641996 HELZ2Q9BYK8 2649 aaKnown RBP2.86□□□□□ -1.95
SCN1A-221ENST00000641996 CRYGDP07320 174 aa2.86□□□□□ -1.95
SCN1A-221ENST00000641996 RPS19BP1Q86WX3 136 aaKnown RBP2.86□□□□□ -1.95
SCN1A-221ENST00000641996 DPH3Q96FX2 82 aa2.86□□□□□ -1.95
SCN1A-221ENST00000641996 TMEM272A0A1B0GTI8 110 aa2.86□□□□□ -1.95
SCN1A-221ENST00000641996 PEBP1P30086 187 aaKnown RBP2.86□□□□□ -1.95
SCN1A-221ENST00000641996 C10orf128Q5T292 105 aa2.86□□□□□ -1.95
SCN1A-221ENST00000641996 H1FXQ92522 213 aaKnown RBP2.86□□□□□ -1.95
SCN1A-221ENST00000641996 CDIP1Q9H305 208 aa2.86□□□□□ -1.95
SCN1A-221ENST00000641996 Q6Q795 121 aa2.86□□□□□ -1.95
SCN1A-221ENST00000641996 SCRT1Q9BWW7 348 aa2.86□□□□□ -1.95
SCN1A-221ENST00000641996 TTTY13Q9BZ97 58 aa2.86□□□□□ -1.95
SCN1A-221ENST00000641996 BTAF1O14981 1849 aa2.86□□□□□ -1.95
SCN1A-221ENST00000641996 IGHV1-24A0A0C4DH33 117 aa2.86□□□□□ -1.95
SCN1A-221ENST00000641996 C15orf62A8K5M9 175 aa2.86□□□□□ -1.95
SCN1A-221ENST00000641996 C20orf197Q8N268 126 aa2.86□□□□□ -1.95
SCN1A-221ENST00000641996 ZNF799Q96GE5 643 aa2.86□□□□□ -1.95
SCN1A-221ENST00000641996 ZNF581Q9P0T4 197 aa2.86□□□□□ -1.95
SCN1A-221ENST00000641996 DNAJC15Q9Y5T4 150 aa2.86□□□□□ -1.95
SCN1A-221ENST00000641996 NEXMIFQ5QGS0 1516 aa2.86□□□□□ -1.95
SCN1A-221ENST00000641996 MGAM2Q2M2H8 2515 aa2.86□□□□□ -1.95
SCN1A-221ENST00000641996 CPAMD8Q8IZJ3 1885 aa2.86□□□□□ -1.95
SCN1A-221ENST00000641996 A0A087WZ39 114 aa2.86□□□□□ -1.95
SCN1A-221ENST00000641996 IGHG2P01859 326 aa2.86□□□□□ -1.95
SCN1A-221ENST00000641996 FHL3Q13643 280 aa2.86□□□□□ -1.95
SCN1A-221ENST00000641996 MLANAQ16655 118 aa2.86□□□□□ -1.95
SCN1A-221ENST00000641996 AGMATQ9BSE5 352 aa2.86□□□□□ -1.95
SCN1A-221ENST00000641996 GYPBP06028 91 aa2.86□□□□□ -1.95
SCN1A-221ENST00000641996 ZNF658BQ4V348 819 aaPredicted RBP2.86□□□□□ -1.95
SCN1A-221ENST00000641996 FAM78AQ5JUQ0 283 aa2.86□□□□□ -1.95
SCN1A-221ENST00000641996 UBR2Q8IWV8 1755 aa2.86□□□□□ -1.95
SCN1A-221ENST00000641996 PXDNLA1KZ92 1463 aa2.85□□□□□ -1.95
SCN1A-221ENST00000641996 LGALS9O00182 355 aa2.85□□□□□ -1.95
SCN1A-221ENST00000641996 PRYO14603 147 aa2.85□□□□□ -1.95
SCN1A-221ENST00000641996 RPL18AQ02543 176 aaKnown RBP2.85□□□□□ -1.95
SCN1A-221ENST00000641996 PLA2G12AQ9BZM1 189 aa2.85□□□□□ -1.95
SCN1A-221ENST00000641996 SNURFQ9Y675 71 aa2.85□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms