RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 A0A1W2PRF3 423 aa8.64□□□□□ -1.03
UPF3A-212ENST00000619079 A0A1W2PRM7 423 aa8.64□□□□□ -1.03
UPF3A-212ENST00000619079 GP9P14770 177 aa8.64□□□□□ -1.03
UPF3A-212ENST00000619079 ORM2P19652 201 aa8.64□□□□□ -1.03
UPF3A-212ENST00000619079 C3AR1Q16581 482 aa8.64□□□□□ -1.03
UPF3A-212ENST00000619079 OR10X1Q8NGY0 326 aa8.64□□□□□ -1.03
UPF3A-212ENST00000619079 SRSF12Q8WXF0 261 aaKnown RBP8.64□□□□□ -1.03
UPF3A-212ENST00000619079 E9PLD3 99 aa8.63□□□□□ -1.03
UPF3A-212ENST00000619079 K7EQM0 130 aa8.63□□□□□ -1.03
UPF3A-212ENST00000619079 ORMDL3Q8N138 153 aa8.63□□□□□ -1.03
UPF3A-212ENST00000619079 ZNRF1Q8ND25 227 aa8.63□□□□□ -1.03
UPF3A-212ENST00000619079 ZNF502Q8TBZ5 544 aa8.63□□□□□ -1.03
UPF3A-212ENST00000619079 F11RQ9Y624 299 aaKnown RBP8.63□□□□□ -1.03
UPF3A-212ENST00000619079 U3KQK5 164 aa8.63□□□□□ -1.03
UPF3A-212ENST00000619079 KMT2BQ9UMN6 2715 aaPredicted RBP8.63□□□□□ -1.03
UPF3A-212ENST00000619079 FBLL1A6NHQ2 334 aaKnown RBP8.63□□□□□ -1.03
UPF3A-212ENST00000619079 OVOL3O00110 214 aa8.63□□□□□ -1.03
UPF3A-212ENST00000619079 IGHV1-2P23083 117 aa8.63□□□□□ -1.03
UPF3A-212ENST00000619079 SRSF1Q07955 248 aaKnown RBP eCLIP8.63□□□□□ -1.03
UPF3A-212ENST00000619079 LINC01559Q495D7 138 aa8.63□□□□□ -1.03
UPF3A-212ENST00000619079 MBNL2Q5VZF2 373 aaKnown RBP8.63□□□□□ -1.03
UPF3A-212ENST00000619079 CIARTQ8N365 385 aaPredicted RBP8.63□□□□□ -1.03
UPF3A-212ENST00000619079 HARBI1Q96MB7 349 aa8.63□□□□□ -1.03
UPF3A-212ENST00000619079 PRELID3AQ96N28 172 aa8.63□□□□□ -1.03
UPF3A-212ENST00000619079 TRGV9Q99603 122 aa8.63□□□□□ -1.03
UPF3A-212ENST00000619079 CHAC1Q9BUX1 264 aa8.63□□□□□ -1.03
UPF3A-212ENST00000619079 TM2D2Q9BX73 214 aa8.63□□□□□ -1.03
UPF3A-212ENST00000619079 FAM208BQ5VWN6 2430 aa8.62□□□□□ -1.03
UPF3A-212ENST00000619079 hADV38S2A0JD32 116 aa8.62□□□□□ -1.03
UPF3A-212ENST00000619079 VSTM5A8MXK1 200 aa8.62□□□□□ -1.03
UPF3A-212ENST00000619079 IGKV3-15P01624 115 aa8.62□□□□□ -1.03
UPF3A-212ENST00000619079 HLA-DRB4P13762 266 aa8.62□□□□□ -1.03
UPF3A-212ENST00000619079 HOXB4P17483 251 aaPredicted RBP8.62□□□□□ -1.03
UPF3A-212ENST00000619079 FXYD2P54710 66 aa8.62□□□□□ -1.03
UPF3A-212ENST00000619079 PHLDA1Q8WV24 401 aaPredicted RBP8.62□□□□□ -1.03
UPF3A-212ENST00000619079 MRPL16Q9NX20 251 aaKnown RBP8.62□□□□□ -1.03
UPF3A-212ENST00000619079 HLA-DRB4X5D2U9 266 aa8.62□□□□□ -1.03
UPF3A-212ENST00000619079 COL6A6A6NMZ7 2263 aa8.62□□□□□ -1.03
UPF3A-212ENST00000619079 DOCK7Q96N67 2140 aa8.62□□□□□ -1.03
UPF3A-212ENST00000619079 TRAV26-1A0A087WT03 109 aa8.62□□□□□ -1.03
UPF3A-212ENST00000619079 TRGV5A0A0B4J1U4 118 aa8.62□□□□□ -1.03
UPF3A-212ENST00000619079 D6R8Y8 96 aa8.62□□□□□ -1.03
UPF3A-212ENST00000619079 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.62□□□□□ -1.03
UPF3A-212ENST00000619079 MC5RP33032 325 aa8.62□□□□□ -1.03
UPF3A-212ENST00000619079 PRNTQ86SH4 94 aa8.62□□□□□ -1.03
UPF3A-212ENST00000619079 SVILO95425 2214 aa8.62□□□□□ -1.03
UPF3A-212ENST00000619079 LYZL6O75951 148 aa8.61□□□□□ -1.03
UPF3A-212ENST00000619079 LOXL1Q08397 574 aaPredicted RBP8.61□□□□□ -1.03
UPF3A-212ENST00000619079 WFDC2Q14508 124 aa8.61□□□□□ -1.03
UPF3A-212ENST00000619079 TAL2Q16559 108 aa8.61□□□□□ -1.03
UPF3A-212ENST00000619079 TM4SF20Q53R12 229 aa8.61□□□□□ -1.03
UPF3A-212ENST00000619079 UTF1Q5T230 341 aa8.61□□□□□ -1.03
UPF3A-212ENST00000619079 GFRALQ6UXV0 394 aa8.61□□□□□ -1.03
UPF3A-212ENST00000619079 ZNF843Q8N446 348 aa8.61□□□□□ -1.03
UPF3A-212ENST00000619079 C8orf46Q8TAG6 207 aa8.61□□□□□ -1.03
UPF3A-212ENST00000619079 TMEM167AQ8TBQ9 72 aa8.61□□□□□ -1.03
UPF3A-212ENST00000619079 SPAG8Q99932 426 aaPredicted RBP8.61□□□□□ -1.03
UPF3A-212ENST00000619079 LINC00574Q9H8X3 128 aa8.61□□□□□ -1.03
UPF3A-212ENST00000619079 RP1L1Q8IWN7 2480 aaPredicted RBP8.61□□□□□ -1.03
UPF3A-212ENST00000619079 LOC389332A0A1B0GUA5 103 aa8.61□□□□□ -1.03
UPF3A-212ENST00000619079 SLC25A17O43808 307 aa8.61□□□□□ -1.03
UPF3A-212ENST00000619079 IGLV2-11P01706 119 aa8.61□□□□□ -1.03
UPF3A-212ENST00000619079 FAM106CPP0CH98 169 aa8.61□□□□□ -1.03
UPF3A-212ENST00000619079 CRYBA4P53673 196 aa8.61□□□□□ -1.03
UPF3A-212ENST00000619079 WT1-ASQ06250 92 aa8.61□□□□□ -1.03
UPF3A-212ENST00000619079 FAM106AQ4KMX7 169 aa8.61□□□□□ -1.03
UPF3A-212ENST00000619079 FAM104BQ5XKR9 115 aa8.61□□□□□ -1.03
UPF3A-212ENST00000619079 GOLT1AQ6ZVE7 132 aa8.61□□□□□ -1.03
UPF3A-212ENST00000619079 CEND1Q8N111 149 aa8.61□□□□□ -1.03
UPF3A-212ENST00000619079 TMEM75Q8N9X5 138 aa8.61□□□□□ -1.03
UPF3A-212ENST00000619079 WFDC12Q8WWY7 111 aa8.61□□□□□ -1.03
UPF3A-212ENST00000619079 ZNF479Q96JC4 524 aa8.61□□□□□ -1.03
UPF3A-212ENST00000619079 GEMIN7Q9H840 131 aaKnown RBP8.61□□□□□ -1.03
UPF3A-212ENST00000619079 TMEM14CQ9P0S9 112 aa8.61□□□□□ -1.03
UPF3A-212ENST00000619079 TNCP24821 2201 aa8.6□□□□□ -1.03
UPF3A-212ENST00000619079 IGHV3OR15-7A0A075B7D8 119 aa8.6□□□□□ -1.03
UPF3A-212ENST00000619079 TCTAP57738 103 aa8.6□□□□□ -1.03
UPF3A-212ENST00000619079 PAX8Q06710 450 aa8.6□□□□□ -1.03
UPF3A-212ENST00000619079 FLYWCH2Q96CP2 140 aaKnown RBP8.6□□□□□ -1.03
UPF3A-212ENST00000619079 NHP2Q9NX24 153 aaKnown RBP8.6□□□□□ -1.03
UPF3A-212ENST00000619079 RPUSD1Q9UJJ7 312 aaKnown RBP8.6□□□□□ -1.03
UPF3A-212ENST00000619079 CHD6Q8TD26 2715 aa8.6□□□□□ -1.03
UPF3A-212ENST00000619079 RELNP78509 3460 aa8.6□□□□□ -1.03
UPF3A-212ENST00000619079 TRAV8-1A0A0A6YYK1 113 aa8.6□□□□□ -1.03
UPF3A-212ENST00000619079 IGLL5B9A064 214 aa8.6□□□□□ -1.03
UPF3A-212ENST00000619079 NDUFS7O75251 213 aa8.6□□□□□ -1.03
UPF3A-212ENST00000619079 GAGE13Q4V321 117 aa8.6□□□□□ -1.03
UPF3A-212ENST00000619079 Q6ZT83 130 aa8.6□□□□□ -1.03
UPF3A-212ENST00000619079 ZNF833PQ6ZTB9 187 aa8.6□□□□□ -1.03
UPF3A-212ENST00000619079 TTC9CQ8N5M4 171 aa8.6□□□□□ -1.03
UPF3A-212ENST00000619079 C1orf162Q8NEQ5 155 aaPredicted RBP8.6□□□□□ -1.03
UPF3A-212ENST00000619079 FZR1Q9UM11 496 aa8.6□□□□□ -1.03
UPF3A-212ENST00000619079 SERTM2A0A1B0GWG4 89 aa8.59□□□□□ -1.03
UPF3A-212ENST00000619079 K7ERJ3 54 aa8.59□□□□□ -1.03
UPF3A-212ENST00000619079 CRYGCP07315 174 aa8.59□□□□□ -1.03
UPF3A-212ENST00000619079 ETDBQ3ZM63 59 aa8.59□□□□□ -1.03
UPF3A-212ENST00000619079 RND1Q92730 232 aa8.59□□□□□ -1.03
UPF3A-212ENST00000619079 HIGD1AQ9Y241 93 aa8.59□□□□□ -1.03
UPF3A-212ENST00000619079 IGHG3P01860 377 aa8.59□□□□□ -1.03
UPF3A-212ENST00000619079 THBDP07204 575 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms