RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 GGACTQ9BVM4 153 aa3.7□□□□□ -1.82
VPS35P1-201ENST00000563400 TMEM126AQ9H061 195 aa3.7□□□□□ -1.82
VPS35P1-201ENST00000563400 TMEM106BQ9NUM4 274 aa3.7□□□□□ -1.82
VPS35P1-201ENST00000563400 NCKAP5O14513 1909 aa3.69□□□□□ -1.82
VPS35P1-201ENST00000563400 ASPMQ8IZT6 3477 aa3.69□□□□□ -1.82
VPS35P1-201ENST00000563400 IGKV1-6A0A0C4DH72 117 aa3.69□□□□□ -1.82
VPS35P1-201ENST00000563400 TMEM189A5PLL7 270 aa3.69□□□□□ -1.82
VPS35P1-201ENST00000563400 OR5H14A6NHG9 310 aa3.69□□□□□ -1.82
VPS35P1-201ENST00000563400 IGHV1-46P01743 117 aa3.69□□□□□ -1.82
VPS35P1-201ENST00000563400 PSG2P11465 335 aa3.69□□□□□ -1.82
VPS35P1-201ENST00000563400 OR10J1P30954 320 aa3.69□□□□□ -1.82
VPS35P1-201ENST00000563400 PPP1CCP36873 323 aaKnown RBP3.69□□□□□ -1.82
VPS35P1-201ENST00000563400 NANOS2P60321 138 aaKnown RBP3.69□□□□□ -1.82
VPS35P1-201ENST00000563400 RRAS2P62070 204 aaPredicted RBP3.69□□□□□ -1.82
VPS35P1-201ENST00000563400 HNRNPA0Q13151 305 aaKnown RBP3.69□□□□□ -1.82
VPS35P1-201ENST00000563400 CDK5R1Q15078 307 aa3.69□□□□□ -1.82
VPS35P1-201ENST00000563400 GLYATL3Q5SZD4 288 aa3.69□□□□□ -1.82
VPS35P1-201ENST00000563400 LAIR2Q6ISS4 152 aa3.69□□□□□ -1.82
VPS35P1-201ENST00000563400 SLC25A42Q86VD7 318 aa3.69□□□□□ -1.82
VPS35P1-201ENST00000563400 ZNF101Q8IZC7 436 aa3.69□□□□□ -1.82
VPS35P1-201ENST00000563400 OR5AS1Q8N127 324 aa3.69□□□□□ -1.82
VPS35P1-201ENST00000563400 ZNF664Q8N3J9 261 aa3.69□□□□□ -1.82
VPS35P1-201ENST00000563400 OR1L1Q8NH94 360 aa3.69□□□□□ -1.82
VPS35P1-201ENST00000563400 ACOT12Q8WYK0 555 aa3.69□□□□□ -1.82
VPS35P1-201ENST00000563400 ABHD14BQ96IU4 210 aa3.69□□□□□ -1.82
VPS35P1-201ENST00000563400 REG4Q9BYZ8 158 aa3.69□□□□□ -1.82
VPS35P1-201ENST00000563400 C11orf68Q9H3H3 251 aaKnown RBP3.69□□□□□ -1.82
VPS35P1-201ENST00000563400 ZNF230Q9UIE0 474 aaPredicted RBP3.69□□□□□ -1.82
VPS35P1-201ENST00000563400 RPUSD1Q9UJJ7 312 aaKnown RBP3.69□□□□□ -1.82
VPS35P1-201ENST00000563400 V9GYS6 101 aa3.69□□□□□ -1.82
VPS35P1-201ENST00000563400 HCFC1P51610 2035 aa3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 CACNA1CQ13936 2221 aa3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 HELZ2Q9BYK8 2649 aaKnown RBP3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 DOPEY1Q5JWR5 2465 aa3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 KIAA1549Q9HCM3 1950 aa3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 MED12Q93074 2177 aa3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 LOC400499M0QZD8 3231 aa3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 TRAV1-2A0A0B4J238 106 aa3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 TRAV4A0A0B4J268 109 aa3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 LOC107986453A0A1B0GWG9 222 aa3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 TRDV1A0A1B0GX56 115 aa3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 A8MUN3 132 aa3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 KRTAP16-1A8MUX0 517 aa3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 MCRIP1C9JLW8 97 aa3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 J3QRE1 110 aa3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 LST1O00453 97 aa3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 IGLV2-11P01706 119 aa3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 HSPB1P04792 205 aaKnown RBP3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 CNTFRP26992 372 aa3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 SRP14P37108 136 aaKnown RBP3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 CXCL5P42830 114 aa3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 KRTAP10-11P60412 298 aa3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 DHRS2Q13268 280 aa3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 KISS1Q15726 138 aa3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 NEDD8Q15843 81 aa3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 MPV17LQ2QL34 196 aa3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 HRCT1Q6UXD1 115 aa3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 LRP11Q86VZ4 500 aa3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 LRRC28Q86X40 367 aaPredicted RBP3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 CCL13Q99616 98 aa3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 KCNIP2Q9NS61 270 aa3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 ZNF581Q9P0T4 197 aa3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 ABRACLQ9P1F3 81 aa3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 ZNF492Q9P255 531 aa3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 KAAG1Q9UBP8 84 aa3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 TRAPPC2LQ9UL33 140 aa3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 U3KQ87 197 aa3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 NAV2Q8IVL1 2488 aa3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 CFAP47Q6ZTR5 3102 aa3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 ANKHD1Q8IWZ3 2542 aaKnown RBP3.68□□□□□ -1.82
VPS35P1-201ENST00000563400 CELSR3Q9NYQ7 3312 aa3.67□□□□□ -1.82
VPS35P1-201ENST00000563400 TRGV10A0A0A0MS01 117 aa3.67□□□□□ -1.82
VPS35P1-201ENST00000563400 A0A1B0GX51 115 aa3.67□□□□□ -1.82
VPS35P1-201ENST00000563400 INS-IGF2F8WCM5 200 aa3.67□□□□□ -1.82
VPS35P1-201ENST00000563400 COX7A2LO14548 114 aa3.67□□□□□ -1.82
VPS35P1-201ENST00000563400 CDS2O95674 445 aa3.67□□□□□ -1.82
VPS35P1-201ENST00000563400 G6PCP35575 357 aa3.67□□□□□ -1.82
VPS35P1-201ENST00000563400 RPS27P42677 84 aaKnown RBP3.67□□□□□ -1.82
VPS35P1-201ENST00000563400 GABRA2P47869 451 aa3.67□□□□□ -1.82
VPS35P1-201ENST00000563400 PIGPP57054 158 aa3.67□□□□□ -1.82
VPS35P1-201ENST00000563400 MMDQ15546 238 aa3.67□□□□□ -1.82
VPS35P1-201ENST00000563400 GRK1Q15835 563 aa3.67□□□□□ -1.82
VPS35P1-201ENST00000563400 AWAT2Q6E213 333 aa3.67□□□□□ -1.82
VPS35P1-201ENST00000563400 HAGHLQ6PII5 290 aaPredicted RBP3.67□□□□□ -1.82
VPS35P1-201ENST00000563400 CEND1Q8N111 149 aa3.67□□□□□ -1.82
VPS35P1-201ENST00000563400 C10orf105Q8TEF2 133 aa3.67□□□□□ -1.82
VPS35P1-201ENST00000563400 RAB2BQ8WUD1 216 aa3.67□□□□□ -1.82
VPS35P1-201ENST00000563400 SLC7A6Q92536 515 aa3.67□□□□□ -1.82
VPS35P1-201ENST00000563400 GNPNAT1Q96EK6 184 aaPredicted RBP3.67□□□□□ -1.82
VPS35P1-201ENST00000563400 PHYHIPLQ96FC7 376 aa3.67□□□□□ -1.82
VPS35P1-201ENST00000563400 S100A16Q96FQ6 103 aaKnown RBP3.67□□□□□ -1.82
VPS35P1-201ENST00000563400 CARD19Q96LW7 228 aa3.67□□□□□ -1.82
VPS35P1-201ENST00000563400 ZNF580Q9UK33 172 aa3.67□□□□□ -1.82
VPS35P1-201ENST00000563400 ASH1LQ9NR48 2969 aaKnown RBP3.67□□□□□ -1.82
VPS35P1-201ENST00000563400 PKDREJQ9NTG1 2253 aa3.67□□□□□ -1.82
VPS35P1-201ENST00000563400 SPTAN1Q13813 2472 aaKnown RBP3.67□□□□□ -1.82
VPS35P1-201ENST00000563400 ATMQ13315 3056 aa3.66□□□□□ -1.82
VPS35P1-201ENST00000563400 ICE1Q9Y2F5 2266 aa3.66□□□□□ -1.82
VPS35P1-201ENST00000563400 PNMA8CA0A1B0GUJ8 204 aa3.66□□□□□ -1.82
VPS35P1-201ENST00000563400 SRRM5B3KS81 715 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms