RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 GCGP01275 180 aa4.25□□□□□ -1.73
VPS13C-209ENST00000560637 IGLC1P0CG04 106 aa4.25□□□□□ -1.73
VPS13C-209ENST00000560637 RPL29P47914 159 aaKnown RBP4.25□□□□□ -1.73
VPS13C-209ENST00000560637 ERCC8Q13216 396 aa4.25□□□□□ -1.73
VPS13C-209ENST00000560637 MORN5Q5VZ52 161 aa4.25□□□□□ -1.73
VPS13C-209ENST00000560637 KCNIP4Q6PIL6 250 aa4.25□□□□□ -1.73
VPS13C-209ENST00000560637 STHQ8IWL8 128 aa4.25□□□□□ -1.73
VPS13C-209ENST00000560637 C5orf17Q8NAS9 161 aa4.25□□□□□ -1.73
VPS13C-209ENST00000560637 TMEM37Q8WXS4 190 aa4.25□□□□□ -1.73
VPS13C-209ENST00000560637 USMG5Q96IX5 58 aa4.25□□□□□ -1.73
VPS13C-209ENST00000560637 PARLQ9H300 379 aa4.25□□□□□ -1.73
VPS13C-209ENST00000560637 XCL2Q9UBD3 114 aa4.25□□□□□ -1.73
VPS13C-209ENST00000560637 TRBV7-1A0A0A6YYK4 115 aa4.25□□□□□ -1.73
VPS13C-209ENST00000560637 TMEM218A2RU14 115 aa4.25□□□□□ -1.73
VPS13C-209ENST00000560637 KNCNA6PVL3 124 aa4.25□□□□□ -1.73
VPS13C-209ENST00000560637 NPIPB5A8MRT5 1133 aa4.25□□□□□ -1.73
VPS13C-209ENST00000560637 M0R381 172 aa4.25□□□□□ -1.73
VPS13C-209ENST00000560637 SPRY2O43597 315 aa4.25□□□□□ -1.73
VPS13C-209ENST00000560637 NDUFA6P56556 154 aa4.25□□□□□ -1.73
VPS13C-209ENST00000560637 CENPWQ5EE01 88 aa4.25□□□□□ -1.73
VPS13C-209ENST00000560637 Q6YL49 198 aa4.25□□□□□ -1.73
VPS13C-209ENST00000560637 NKX6-2Q9C056 277 aaPredicted RBP4.25□□□□□ -1.73
VPS13C-209ENST00000560637 MANBALQ9NQG1 85 aa4.25□□□□□ -1.73
VPS13C-209ENST00000560637 TRAV12-2A0A075B6T6 113 aa4.24□□□□□ -1.73
VPS13C-209ENST00000560637 IGKV1OR2-108A0A075B7D4 117 aa4.24□□□□□ -1.73
VPS13C-209ENST00000560637 PCP4L1A6NKN8 68 aa4.24□□□□□ -1.73
VPS13C-209ENST00000560637 G3V3Q6 166 aa4.24□□□□□ -1.73
VPS13C-209ENST00000560637 CLDN34H7C241 214 aa4.24□□□□□ -1.73
VPS13C-209ENST00000560637 SMIM17P0DL12 118 aa4.24□□□□□ -1.73
VPS13C-209ENST00000560637 FOLR2P14207 255 aa4.24□□□□□ -1.73
VPS13C-209ENST00000560637 SPANXN1Q5VSR9 72 aa4.24□□□□□ -1.73
VPS13C-209ENST00000560637 APRG1Q8IVJ8 170 aa4.24□□□□□ -1.73
VPS13C-209ENST00000560637 RAX2Q96IS3 184 aa4.24□□□□□ -1.73
VPS13C-209ENST00000560637 PSMG3Q9BT73 122 aaPredicted RBP4.24□□□□□ -1.73
VPS13C-209ENST00000560637 GGACTQ9BVM4 153 aa4.24□□□□□ -1.73
VPS13C-209ENST00000560637 IGKV1-17P01599 117 aa4.24□□□□□ -1.73
VPS13C-209ENST00000560637 IGHG2P01859 326 aa4.24□□□□□ -1.73
VPS13C-209ENST00000560637 NTF3P20783 257 aa4.24□□□□□ -1.73
VPS13C-209ENST00000560637 RPL35P42766 123 aaKnown RBP4.24□□□□□ -1.73
VPS13C-209ENST00000560637 COMMD1Q8N668 190 aa4.24□□□□□ -1.73
VPS13C-209ENST00000560637 OR10G8Q8NGN5 311 aa4.24□□□□□ -1.73
VPS13C-209ENST00000560637 LINC01006Q8NI28 216 aa4.24□□□□□ -1.73
VPS13C-209ENST00000560637 FAM210AQ96ND0 272 aa4.24□□□□□ -1.73
VPS13C-209ENST00000560637 FANCD2OSQ96PS1 177 aa4.24□□□□□ -1.73
VPS13C-209ENST00000560637 LINC01587Q99440 93 aa4.24□□□□□ -1.73
VPS13C-209ENST00000560637 RNF24Q9Y225 148 aa4.24□□□□□ -1.73
VPS13C-209ENST00000560637 CLPSL1A2RUU4 121 aa4.24□□□□□ -1.73
VPS13C-209ENST00000560637 FAM223BA6NKX1 122 aa4.24□□□□□ -1.73
VPS13C-209ENST00000560637 APOHP02749 345 aaPredicted RBP4.24□□□□□ -1.73
VPS13C-209ENST00000560637 GZMBP10144 247 aa4.24□□□□□ -1.73
VPS13C-209ENST00000560637 ATP5IP56385 69 aaPredicted RBP4.24□□□□□ -1.73
VPS13C-209ENST00000560637 FOXL1Q12952 345 aa4.24□□□□□ -1.73
VPS13C-209ENST00000560637 POU2AF1Q16633 256 aa4.24□□□□□ -1.73
VPS13C-209ENST00000560637 GTSCR1Q86UQ5 136 aa4.24□□□□□ -1.73
VPS13C-209ENST00000560637 FAM223AQ8IWN6 122 aa4.24□□□□□ -1.73
VPS13C-209ENST00000560637 C8orf31Q8N9H6 132 aa4.24□□□□□ -1.73
VPS13C-209ENST00000560637 TRAV12-3A0A0B4J271 114 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 A0A1B0GW64 132 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 LY6LH3BQJ8 138 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 ELANEP08246 267 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 CTSGP08311 255 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 SPINK13Q1W4C9 94 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 KIAA1644Q3SXP7 199 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 SPSB3Q6PJ21 355 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 RNF152Q8N8N0 203 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 NPBQ8NG41 125 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 TMEM170AQ8WVE7 144 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 PGLYRP4Q96LB8 373 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 NEU1Q99519 415 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 TRGV9Q99603 122 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 RNASE7Q9H1E1 156 aaKnown RBP4.23□□□□□ -1.73
VPS13C-209ENST00000560637 SAV1Q9H4B6 383 aaPredicted RBP4.23□□□□□ -1.73
VPS13C-209ENST00000560637 ESM1Q9NQ30 184 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 PGPEP1Q9NXJ5 209 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 NAT8BQ9UHF3 227 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 HRNRQ86YZ3 2850 aaPredicted RBP4.23□□□□□ -1.73
VPS13C-209ENST00000560637 TENM4Q6N022 2769 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 C7orf77A4D0Y5 90 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 M0R2Z0 102 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 PEX7O00628 323 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 TNFRSF6BO95407 300 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 IGHV3-53P01767 116 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 BAGE3Q86Y29 109 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 DLX4Q92988 240 aaPredicted RBP4.23□□□□□ -1.73
VPS13C-209ENST00000560637 MRPL32Q9BYC8 188 aaKnown RBP4.23□□□□□ -1.73
VPS13C-209ENST00000560637 SAMD10Q9BYL1 202 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 TSSC4Q9Y5U2 329 aaPredicted RBP4.23□□□□□ -1.73
VPS13C-209ENST00000560637 IGLV11-55A0A075B6I3 123 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 IGHV3-73A0A0B4J1V6 119 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 XKRY2A2RUG3 117 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 CBY3A6NI87 242 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 C1orf196B1AJZ1 125 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 NDUFA3O95167 84 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 FABP4P15090 132 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 RRN3P1Q2M238 152 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 RNF212Q495C1 297 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 IBA57Q5T440 356 aaKnown RBP4.23□□□□□ -1.73
VPS13C-209ENST00000560637 TTC9CQ8N5M4 171 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 ZNF491Q8N8L2 437 aa4.23□□□□□ -1.73
VPS13C-209ENST00000560637 LINC00477Q96M19 166 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms