RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 TCRBV4S1A1TA0A5B7 111 aa0.8□□□□□ -2.28
VPS13C-207ENST00000558919 C5orf58C9J3I9 102 aa0.8□□□□□ -2.28
VPS13C-207ENST00000558919 J3KT08 172 aa0.8□□□□□ -2.28
VPS13C-207ENST00000558919 LYRM1O43325 122 aa0.8□□□□□ -2.28
VPS13C-207ENST00000558919 HYPMO75409 117 aa0.8□□□□□ -2.28
VPS13C-207ENST00000558919 LYNX1P0DP58 116 aa0.8□□□□□ -2.28
VPS13C-207ENST00000558919 SCGB1A1P11684 91 aa0.8□□□□□ -2.28
VPS13C-207ENST00000558919 DSCR4P56555 118 aaPredicted RBP0.8□□□□□ -2.28
VPS13C-207ENST00000558919 ROMO1P60602 79 aa0.8□□□□□ -2.28
VPS13C-207ENST00000558919 CDK6Q00534 326 aa0.8□□□□□ -2.28
VPS13C-207ENST00000558919 LINC00305Q7Z4B0 112 aa0.8□□□□□ -2.28
VPS13C-207ENST00000558919 LRRC18Q8N456 261 aa0.8□□□□□ -2.28
VPS13C-207ENST00000558919 FAM216BQ8N7L0 139 aa0.8□□□□□ -2.28
VPS13C-207ENST00000558919 OR4B1Q8NGF8 309 aa0.8□□□□□ -2.28
VPS13C-207ENST00000558919 OR5H6Q8NGV6 325 aa0.8□□□□□ -2.28
VPS13C-207ENST00000558919 OR4C6Q8NH72 309 aa0.8□□□□□ -2.28
VPS13C-207ENST00000558919 MUCL1Q96DR8 90 aa0.8□□□□□ -2.28
VPS13C-207ENST00000558919 ZC2HC1AQ96GY0 325 aa0.8□□□□□ -2.28
VPS13C-207ENST00000558919 MCEEQ96PE7 176 aa0.8□□□□□ -2.28
VPS13C-207ENST00000558919 TP53RKQ96S44 253 aa0.8□□□□□ -2.28
VPS13C-207ENST00000558919 KLK9Q9UKQ9 250 aa0.8□□□□□ -2.28
VPS13C-207ENST00000558919 SOX21Q9Y651 276 aaPredicted RBP0.8□□□□□ -2.28
VPS13C-207ENST00000558919 SNURFQ9Y675 71 aa0.8□□□□□ -2.28
VPS13C-207ENST00000558919 ARFGEF3Q5TH69 2177 aa0.8□□□□□ -2.28
VPS13C-207ENST00000558919 ALPK2Q86TB3 2170 aa0.8□□□□□ -2.28
VPS13C-207ENST00000558919 BCL9O00512 1426 aa0.8□□□□□ -2.28
VPS13C-207ENST00000558919 CD109Q6YHK3 1445 aa0.8□□□□□ -2.28
VPS13C-207ENST00000558919 TRAPPC8Q9Y2L5 1435 aa0.8□□□□□ -2.28
VPS13C-207ENST00000558919 COL6A6A6NMZ7 2263 aa0.8□□□□□ -2.28
VPS13C-207ENST00000558919 NCAPD3P42695 1498 aa0.8□□□□□ -2.28
VPS13C-207ENST00000558919 EXPH5Q8NEV8 1989 aa0.79□□□□□ -2.28
VPS13C-207ENST00000558919 PBRM1Q86U86 1689 aa0.79□□□□□ -2.28
VPS13C-207ENST00000558919 IGKV2D-26A0A0A0MRZ7 120 aa0.79□□□□□ -2.28
VPS13C-207ENST00000558919 TRBV6-8A0A0A6YYG3 113 aa0.79□□□□□ -2.28
VPS13C-207ENST00000558919 TRAV10A0A0B4J240 114 aa0.79□□□□□ -2.28
VPS13C-207ENST00000558919 IGKV3D-7A0A0C4DH55 119 aa0.79□□□□□ -2.28
VPS13C-207ENST00000558919 IGKV3OR2-268A0A0C4DH90 116 aa0.79□□□□□ -2.28
VPS13C-207ENST00000558919 LOC105371267A0A1B0GV96 52 aa0.79□□□□□ -2.28
VPS13C-207ENST00000558919 hDV103S1A0JD37 113 aa0.79□□□□□ -2.28
VPS13C-207ENST00000558919 CCDC160A6NGH7 325 aa0.79□□□□□ -2.28
VPS13C-207ENST00000558919 E7EUB6 86 aa0.79□□□□□ -2.28
VPS13C-207ENST00000558919 H3BMG7 143 aa0.79□□□□□ -2.28
VPS13C-207ENST00000558919 DEGS1O15121 323 aa0.79□□□□□ -2.28
VPS13C-207ENST00000558919 ERC2-IT1O76042 136 aa0.79□□□□□ -2.28
VPS13C-207ENST00000558919 RNASE3P12724 160 aaKnown RBP0.79□□□□□ -2.28
VPS13C-207ENST00000558919 RPS3P23396 243 aaKnown RBP eCLIP0.79□□□□□ -2.28
VPS13C-207ENST00000558919 RPS28P62857 69 aaKnown RBP0.79□□□□□ -2.28
VPS13C-207ENST00000558919 MRPS36P82909 103 aaKnown RBP0.79□□□□□ -2.28
VPS13C-207ENST00000558919 VMA21Q3ZAQ7 101 aa0.79□□□□□ -2.28
VPS13C-207ENST00000558919 C1orf137Q5JT78 98 aa0.79□□□□□ -2.28
VPS13C-207ENST00000558919 TEX261Q6UWH6 196 aa0.79□□□□□ -2.28
VPS13C-207ENST00000558919 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP0.79□□□□□ -2.28
VPS13C-207ENST00000558919 OR8I2Q8N0Y5 310 aa0.79□□□□□ -2.28
VPS13C-207ENST00000558919 Q8N2B8 174 aa0.79□□□□□ -2.28
VPS13C-207ENST00000558919 TMEM229BQ8NBD8 167 aa0.79□□□□□ -2.28
VPS13C-207ENST00000558919 ZNF431Q8TF32 576 aaPredicted RBP0.79□□□□□ -2.28
VPS13C-207ENST00000558919 RAB37Q96AX2 223 aa0.79□□□□□ -2.28
VPS13C-207ENST00000558919 HYLS1Q96M11 299 aa0.79□□□□□ -2.28
VPS13C-207ENST00000558919 PRELID3AQ96N28 172 aa0.79□□□□□ -2.28
VPS13C-207ENST00000558919 TPRKBQ9Y3C4 175 aa0.79□□□□□ -2.28
VPS13C-207ENST00000558919 U3KQ87 197 aa0.79□□□□□ -2.28
VPS13C-207ENST00000558919 EML6Q6ZMW3 1958 aa0.79□□□□□ -2.28
VPS13C-207ENST00000558919 DOCK3Q8IZD9 2030 aa0.79□□□□□ -2.28
VPS13C-207ENST00000558919 COL4A5P29400 1685 aa0.78□□□□□ -2.28
VPS13C-207ENST00000558919 MYH7BA7E2Y1 1941 aa0.78□□□□□ -2.28
VPS13C-207ENST00000558919 DENND4CQ5VZ89 1909 aa0.78□□□□□ -2.28
VPS13C-207ENST00000558919 DLG5Q8TDM6 1919 aa0.78□□□□□ -2.28
VPS13C-207ENST00000558919 TRAV36DV7A0A075B6V5 113 aa0.78□□□□□ -2.28
VPS13C-207ENST00000558919 TRAV27A0A087WT01 109 aa0.78□□□□□ -2.28
VPS13C-207ENST00000558919 IGKV2-40A0A087WW87 121 aaPredicted RBP0.78□□□□□ -2.28
VPS13C-207ENST00000558919 BORCS7-ASMTA0A0B4J1R7 106 aa0.78□□□□□ -2.28
VPS13C-207ENST00000558919 TRAV13-1A0A0B4J241 112 aa0.78□□□□□ -2.28
VPS13C-207ENST00000558919 TRBV7-6A0A0J9YX20 115 aa0.78□□□□□ -2.28
VPS13C-207ENST00000558919 TRBV27A0A0K0K1C4 114 aa0.78□□□□□ -2.28
VPS13C-207ENST00000558919 LOC107984640A0A0U1RRK4 108 aa0.78□□□□□ -2.28
VPS13C-207ENST00000558919 A0A1B0GX51 115 aa0.78□□□□□ -2.28
VPS13C-207ENST00000558919 B4DSR2 109 aa0.78□□□□□ -2.28
VPS13C-207ENST00000558919 ZNF736B4DX44 427 aaPredicted RBP0.78□□□□□ -2.28
VPS13C-207ENST00000558919 IGKV2D-40P01614 121 aaPredicted RBP0.78□□□□□ -2.28
VPS13C-207ENST00000558919 IGLV1-51P01701 117 aa0.78□□□□□ -2.28
VPS13C-207ENST00000558919 CD2P06729 351 aa0.78□□□□□ -2.28
VPS13C-207ENST00000558919 DBIP07108 87 aaKnown RBP0.78□□□□□ -2.28
VPS13C-207ENST00000558919 TPT1P13693 172 aaKnown RBP0.78□□□□□ -2.28
VPS13C-207ENST00000558919 CMPK1P30085 196 aa0.78□□□□□ -2.28
VPS13C-207ENST00000558919 ZNF93P35789 620 aaPredicted RBP0.78□□□□□ -2.28
VPS13C-207ENST00000558919 SRP9P49458 86 aaKnown RBP0.78□□□□□ -2.28
VPS13C-207ENST00000558919 GTF2A1P52655 376 aaPredicted RBP0.78□□□□□ -2.28
VPS13C-207ENST00000558919 CIRBPQ14011 172 aaKnown RBP0.78□□□□□ -2.28
VPS13C-207ENST00000558919 OR8B8Q15620 311 aa0.78□□□□□ -2.28
VPS13C-207ENST00000558919 CCDC153Q494R4 210 aa0.78□□□□□ -2.28
VPS13C-207ENST00000558919 FAM74A1Q5RGS3 127 aa0.78□□□□□ -2.28
VPS13C-207ENST00000558919 C1orf134Q5TEV5 83 aa0.78□□□□□ -2.28
VPS13C-207ENST00000558919 GKN2Q86XP6 184 aa0.78□□□□□ -2.28
VPS13C-207ENST00000558919 TEX29Q8N6K0 151 aa0.78□□□□□ -2.28
VPS13C-207ENST00000558919 Q8N814 137 aa0.78□□□□□ -2.28
VPS13C-207ENST00000558919 C15orf53Q8NAA6 179 aa0.78□□□□□ -2.28
VPS13C-207ENST00000558919 C10orf105Q8TEF2 133 aa0.78□□□□□ -2.28
VPS13C-207ENST00000558919 LZICQ8WZA0 190 aa0.78□□□□□ -2.28
VPS13C-207ENST00000558919 GGACTQ9BVM4 153 aa0.78□□□□□ -2.28
VPS13C-207ENST00000558919 CHCHD2Q9Y6H1 151 aaPredicted RBP0.78□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms