RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 LGALS9BQ3B8N2 356 aa12.89□□□□□ -0.35
SHMT2-232ENST00000557487 LGALS9CQ6DKI2 356 aa12.89□□□□□ -0.35
SHMT2-232ENST00000557487 LHFPL4Q7Z7J7 247 aa12.89□□□□□ -0.35
SHMT2-232ENST00000557487 CST9LQ9H4G1 147 aa12.89□□□□□ -0.35
SHMT2-232ENST00000557487 RALYQ9UKM9 306 aaKnown RBP12.89□□□□□ -0.35
SHMT2-232ENST00000557487 DSPP15924 2871 aaKnown RBP12.89□□□□□ -0.35
SHMT2-232ENST00000557487 NAV3Q8IVL0 2385 aa12.89□□□□□ -0.35
SHMT2-232ENST00000557487 IGHV3-21A0A0B4J1V1 117 aa12.88□□□□□ -0.35
SHMT2-232ENST00000557487 CSN3P07498 182 aa12.88□□□□□ -0.35
SHMT2-232ENST00000557487 ZNF138P52744 262 aa12.88□□□□□ -0.35
SHMT2-232ENST00000557487 PLGLAQ15195 96 aa12.88□□□□□ -0.35
SHMT2-232ENST00000557487 NPFFR1Q9GZQ6 430 aa12.88□□□□□ -0.35
SHMT2-232ENST00000557487 RAB1BQ9H0U4 201 aa12.88□□□□□ -0.35
SHMT2-232ENST00000557487 DYNLRB1Q9NP97 96 aa12.88□□□□□ -0.35
SHMT2-232ENST00000557487 OR2T8A6NH00 312 aa12.88□□□□□ -0.35
SHMT2-232ENST00000557487 THBDP07204 575 aa12.88□□□□□ -0.35
SHMT2-232ENST00000557487 CNTFRP26992 372 aa12.88□□□□□ -0.35
SHMT2-232ENST00000557487 LY6DQ14210 128 aa12.88□□□□□ -0.35
SHMT2-232ENST00000557487 COX8CQ7Z4L0 72 aa12.88□□□□□ -0.35
SHMT2-232ENST00000557487 ABHD17AQ96GS6 310 aa12.88□□□□□ -0.35
SHMT2-232ENST00000557487 CFAP47Q6ZTR5 3102 aa12.87□□□□□ -0.35
SHMT2-232ENST00000557487 PRRG2O14669 202 aa12.87□□□□□ -0.35
SHMT2-232ENST00000557487 SIVA1O15304 175 aa12.87□□□□□ -0.35
SHMT2-232ENST00000557487 OCIAD2Q56VL3 154 aa12.87□□□□□ -0.35
SHMT2-232ENST00000557487 TMEM97Q5BJF2 176 aa12.87□□□□□ -0.35
SHMT2-232ENST00000557487 C2orf91Q6ZV80 131 aa12.87□□□□□ -0.35
SHMT2-232ENST00000557487 JKAMPQ9P055 326 aa12.87□□□□□ -0.35
SHMT2-232ENST00000557487 PLCE1Q9P212 2302 aa12.87□□□□□ -0.35
SHMT2-232ENST00000557487 ITPR1Q14643 2758 aa12.86□□□□□ -0.35
SHMT2-232ENST00000557487 A0A087X0K7 114 aa12.86□□□□□ -0.35
SHMT2-232ENST00000557487 A0A0G2JNJ9 132 aa12.86□□□□□ -0.35
SHMT2-232ENST00000557487 APOBEC3AP31941 199 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-232ENST00000557487 PSG9Q00887 426 aa12.86□□□□□ -0.35
SHMT2-232ENST00000557487 PRR31Q5SQ13 230 aa12.86□□□□□ -0.35
SHMT2-232ENST00000557487 AMMECR1LQ6DCA0 310 aa12.86□□□□□ -0.35
SHMT2-232ENST00000557487 OR9G4Q8NGQ1 327 aa12.86□□□□□ -0.35
SHMT2-232ENST00000557487 RPEQ96AT9 228 aa12.86□□□□□ -0.35
SHMT2-232ENST00000557487 RNF125Q96EQ8 232 aa12.86□□□□□ -0.35
SHMT2-232ENST00000557487 AAMDCQ9H7C9 122 aa12.86□□□□□ -0.35
SHMT2-232ENST00000557487 Q9UFV3 132 aa12.86□□□□□ -0.35
SHMT2-232ENST00000557487 WI2-2373I1.2A0A1W2PRP0 233 aa12.86□□□□□ -0.35
SHMT2-232ENST00000557487 A6NDN8 102 aa12.86□□□□□ -0.35
SHMT2-232ENST00000557487 CBY3A6NI87 242 aa12.86□□□□□ -0.35
SHMT2-232ENST00000557487 K7EIM0 57 aa12.86□□□□□ -0.35
SHMT2-232ENST00000557487 MRPS12O15235 138 aaKnown RBP12.86□□□□□ -0.35
SHMT2-232ENST00000557487 SMIM15Q7Z3B0 74 aa12.86□□□□□ -0.35
SHMT2-232ENST00000557487 ORMDL3Q8N138 153 aa12.86□□□□□ -0.35
SHMT2-232ENST00000557487 ZNF491Q8N8L2 437 aa12.86□□□□□ -0.35
SHMT2-232ENST00000557487 ZNF414Q96IQ9 312 aa12.86□□□□□ -0.35
SHMT2-232ENST00000557487 ZNF48Q96MX3 618 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-232ENST00000557487 FBXL15Q9H469 300 aa12.86□□□□□ -0.35
SHMT2-232ENST00000557487 H0Y8G0 127 aa12.85□□□□□ -0.35
SHMT2-232ENST00000557487 K7ERU9 68 aa12.85□□□□□ -0.35
SHMT2-232ENST00000557487 FAM104BQ5XKR9 115 aa12.85□□□□□ -0.35
SHMT2-232ENST00000557487 TP73-AS1Q9UF72 201 aa12.85□□□□□ -0.35
SHMT2-232ENST00000557487 C7orf71A4D174 169 aa12.84□□□□□ -0.35
SHMT2-232ENST00000557487 H3BRM9 83 aa12.84□□□□□ -0.35
SHMT2-232ENST00000557487 APELAP0DMC3 54 aa12.84□□□□□ -0.35
SHMT2-232ENST00000557487 CRIP1P50238 77 aa12.84□□□□□ -0.35
SHMT2-232ENST00000557487 GTF2H5Q6ZYL4 71 aa12.84□□□□□ -0.35
SHMT2-232ENST00000557487 TMEM189A5PLL7 270 aa12.84□□□□□ -0.35
SHMT2-232ENST00000557487 FGF6P10767 208 aa12.84□□□□□ -0.35
SHMT2-232ENST00000557487 LDLRAD2Q5SZI1 272 aa12.84□□□□□ -0.35
SHMT2-232ENST00000557487 BOD1L2Q8IYS8 172 aa12.84□□□□□ -0.35
SHMT2-232ENST00000557487 OR4X2Q8NGF9 303 aa12.84□□□□□ -0.35
SHMT2-232ENST00000557487 PRELID3AQ96N28 172 aa12.84□□□□□ -0.35
SHMT2-232ENST00000557487 LY6LH3BQJ8 138 aa12.83□□□□□ -0.36
SHMT2-232ENST00000557487 CNIH1O95406 144 aa12.83□□□□□ -0.36
SHMT2-232ENST00000557487 HBDP02042 147 aa12.83□□□□□ -0.36
SHMT2-232ENST00000557487 HSD52Q0P140 79 aa12.83□□□□□ -0.36
SHMT2-232ENST00000557487 SIGLEC8Q9NYZ4 499 aa12.83□□□□□ -0.36
SHMT2-232ENST00000557487 MGAQ8IWI9 3026 aa12.83□□□□□ -0.36
SHMT2-232ENST00000557487 B9A039 149 aa12.82□□□□□ -0.36
SHMT2-232ENST00000557487 IFI27P40305 119 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-232ENST00000557487 SRSF2Q01130 221 aaKnown RBP12.82□□□□□ -0.36
SHMT2-232ENST00000557487 RNF151Q2KHN1 245 aa12.82□□□□□ -0.36
SHMT2-232ENST00000557487 LINC01559Q495D7 138 aa12.82□□□□□ -0.36
SHMT2-232ENST00000557487 AP1S3Q96PC3 154 aa12.82□□□□□ -0.36
SHMT2-232ENST00000557487 LOC400499M0QZD8 3231 aa12.82□□□□□ -0.36
SHMT2-232ENST00000557487 A0A096LNJ9 63 aa12.82□□□□□ -0.36
SHMT2-232ENST00000557487 GAGE12BA1L429 117 aa12.82□□□□□ -0.36
SHMT2-232ENST00000557487 D6R8Y8 96 aa12.82□□□□□ -0.36
SHMT2-232ENST00000557487 IL4P05112 153 aa12.82□□□□□ -0.36
SHMT2-232ENST00000557487 S100A7P31151 101 aa12.82□□□□□ -0.36
SHMT2-232ENST00000557487 ZNF843Q8N446 348 aa12.82□□□□□ -0.36
SHMT2-232ENST00000557487 PIFOQ8TCI5 191 aa12.82□□□□□ -0.36
SHMT2-232ENST00000557487 FAM208BQ5VWN6 2430 aa12.81□□□□□ -0.36
SHMT2-232ENST00000557487 TRAV8-6A0A0B4J262 113 aa12.81□□□□□ -0.36
SHMT2-232ENST00000557487 C9orf118A6NHY6 69 aa12.81□□□□□ -0.36
SHMT2-232ENST00000557487 SHISA9B4DS77 424 aa12.81□□□□□ -0.36
SHMT2-232ENST00000557487 SCGB2A1O75556 95 aa12.81□□□□□ -0.36
SHMT2-232ENST00000557487 NCR2O95944 276 aa12.81□□□□□ -0.36
SHMT2-232ENST00000557487 LYZL1Q6UWQ5 148 aa12.81□□□□□ -0.36
SHMT2-232ENST00000557487 C17orf77Q96MU5 243 aa12.81□□□□□ -0.36
SHMT2-232ENST00000557487 VPS25Q9BRG1 176 aa12.81□□□□□ -0.36
SHMT2-232ENST00000557487 MCRIP2Q9BUT9 160 aaKnown RBP12.81□□□□□ -0.36
SHMT2-232ENST00000557487 GAGE10A6NGK3 116 aa12.8□□□□□ -0.36
SHMT2-232ENST00000557487 SMAD7O15105 426 aaKnown RBP12.8□□□□□ -0.36
SHMT2-232ENST00000557487 BMI1P35226 326 aa12.8□□□□□ -0.36
SHMT2-232ENST00000557487 OR8A1Q8NGG7 326 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms