RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 SMCO1Q147U7 214 aa8.69□□□□□ -1.02
SCAF11-208ENST00000546534 GPR107Q5VW38 600 aa8.69□□□□□ -1.02
SCAF11-208ENST00000546534 FAAP20Q6NZ36 180 aa8.69□□□□□ -1.02
SCAF11-208ENST00000546534 TMEM229BQ8NBD8 167 aa8.69□□□□□ -1.02
SCAF11-208ENST00000546534 VSIG2Q96IQ7 327 aa8.69□□□□□ -1.02
SCAF11-208ENST00000546534 FAM25AB3EWG3 89 aa8.68□□□□□ -1.02
SCAF11-208ENST00000546534 FAM25CB3EWG5 89 aa8.68□□□□□ -1.02
SCAF11-208ENST00000546534 FAM25GB3EWG6 89 aa8.68□□□□□ -1.02
SCAF11-208ENST00000546534 H7BYZ3 331 aa8.68□□□□□ -1.02
SCAF11-208ENST00000546534 RLN2P04090 185 aa8.68□□□□□ -1.02
SCAF11-208ENST00000546534 GCSHP23434 173 aa8.68□□□□□ -1.02
SCAF11-208ENST00000546534 CDKN1BP46527 198 aa8.68□□□□□ -1.02
SCAF11-208ENST00000546534 CCR6P51684 374 aa8.68□□□□□ -1.02
SCAF11-208ENST00000546534 STEAP1BQ6NZ63 245 aa8.68□□□□□ -1.02
SCAF11-208ENST00000546534 TMEM182Q6ZP80 229 aaPredicted RBP8.68□□□□□ -1.02
SCAF11-208ENST00000546534 IL22RA2Q969J5 263 aa8.68□□□□□ -1.02
SCAF11-208ENST00000546534 YIPF6Q96EC8 236 aa8.68□□□□□ -1.02
SCAF11-208ENST00000546534 TMPRSS5Q9H3S3 457 aa8.68□□□□□ -1.02
SCAF11-208ENST00000546534 NXPH4O95158 308 aa8.67□□□□□ -1.02
SCAF11-208ENST00000546534 CXCL3P19876 107 aa8.67□□□□□ -1.02
SCAF11-208ENST00000546534 TAS2R19P59542 299 aa8.67□□□□□ -1.02
SCAF11-208ENST00000546534 SURF2Q15527 256 aaPredicted RBP8.67□□□□□ -1.02
SCAF11-208ENST00000546534 PSG3Q16557 428 aa8.67□□□□□ -1.02
SCAF11-208ENST00000546534 CCDC28AQ8IWP9 274 aa8.67□□□□□ -1.02
SCAF11-208ENST00000546534 BPIFCQ8NFQ6 507 aa8.67□□□□□ -1.02
SCAF11-208ENST00000546534 TMEM147Q9BVK8 224 aa8.67□□□□□ -1.02
SCAF11-208ENST00000546534 Q9H521 79 aa8.67□□□□□ -1.02
SCAF11-208ENST00000546534 PAIP2BQ9ULR5 123 aaKnown RBP8.67□□□□□ -1.02
SCAF11-208ENST00000546534 GPR132Q9UNW8 380 aa8.67□□□□□ -1.02
SCAF11-208ENST00000546534 SNURFLB1AK76 121 aa8.66□□□□□ -1.02
SCAF11-208ENST00000546534 H3BRN7 92 aa8.66□□□□□ -1.02
SCAF11-208ENST00000546534 Q6ZTI0 123 aa8.66□□□□□ -1.02
SCAF11-208ENST00000546534 LYZL2Q7Z4W2 148 aa8.66□□□□□ -1.02
SCAF11-208ENST00000546534 TMED4Q7Z7H5 227 aa8.66□□□□□ -1.02
SCAF11-208ENST00000546534 NFE4Q86UQ8 179 aa8.66□□□□□ -1.02
SCAF11-208ENST00000546534 PARD6GQ9BYG4 376 aaPredicted RBP8.66□□□□□ -1.02
SCAF11-208ENST00000546534 A0A0B4J2A0 478 aa8.65□□□□□ -1.02
SCAF11-208ENST00000546534 KRTAP29-1A8MX34 341 aaPredicted RBP8.65□□□□□ -1.02
SCAF11-208ENST00000546534 IAPPP10997 89 aa8.65□□□□□ -1.02
SCAF11-208ENST00000546534 NCS1P62166 190 aa8.65□□□□□ -1.02
SCAF11-208ENST00000546534 RAB11AP62491 216 aa8.65□□□□□ -1.02
SCAF11-208ENST00000546534 OR1S1Q8NH92 325 aa8.65□□□□□ -1.02
SCAF11-208ENST00000546534 RPUSD4Q96CM3 377 aaKnown RBP8.65□□□□□ -1.02
SCAF11-208ENST00000546534 C20orf144Q9BQM9 153 aa8.65□□□□□ -1.02
SCAF11-208ENST00000546534 SHANK2-AS3Q9BTD1 123 aa8.65□□□□□ -1.02
SCAF11-208ENST00000546534 EXTL2Q9UBQ6 330 aa8.65□□□□□ -1.02
SCAF11-208ENST00000546534 SHPKQ9UHJ6 478 aa8.65□□□□□ -1.02
SCAF11-208ENST00000546534 KCNIP3Q9Y2W7 256 aa8.65□□□□□ -1.02
SCAF11-208ENST00000546534 PRSS46E5RG02 174 aa8.64□□□□□ -1.03
SCAF11-208ENST00000546534 PAX4O43316 350 aa8.64□□□□□ -1.03
SCAF11-208ENST00000546534 AKR1C4P17516 323 aa8.64□□□□□ -1.03
SCAF11-208ENST00000546534 RPL7P18124 248 aaKnown RBP8.64□□□□□ -1.03
SCAF11-208ENST00000546534 S100A7P31151 101 aa8.64□□□□□ -1.03
SCAF11-208ENST00000546534 GFI1BQ5VTD9 330 aa8.64□□□□□ -1.03
SCAF11-208ENST00000546534 LRRC20Q8TCA0 184 aa8.64□□□□□ -1.03
SCAF11-208ENST00000546534 TMEM70Q9BUB7 260 aa8.64□□□□□ -1.03
SCAF11-208ENST00000546534 A0A087X0K7 114 aa8.63□□□□□ -1.03
SCAF11-208ENST00000546534 DISC1C4P0D8 188 aa8.63□□□□□ -1.03
SCAF11-208ENST00000546534 VBP1P61758 197 aa8.63□□□□□ -1.03
SCAF11-208ENST00000546534 DAZ2Q13117 558 aaKnown RBP8.63□□□□□ -1.03
SCAF11-208ENST00000546534 MZT2AQ6P582 158 aa8.63□□□□□ -1.03
SCAF11-208ENST00000546534 TMA7Q9Y2S6 64 aaKnown RBP8.63□□□□□ -1.03
SCAF11-208ENST00000546534 HMCN2Q8NDA2 5059 aa8.63□□□□□ -1.03
SCAF11-208ENST00000546534 TRGV2A0A075B6R0 118 aa8.62□□□□□ -1.03
SCAF11-208ENST00000546534 PITX3O75364 302 aa8.62□□□□□ -1.03
SCAF11-208ENST00000546534 RAP2BP61225 183 aa8.62□□□□□ -1.03
SCAF11-208ENST00000546534 SERTAD4-AS1Q5TG53 156 aa8.62□□□□□ -1.03
SCAF11-208ENST00000546534 CCDC190Q86UF4 302 aa8.62□□□□□ -1.03
SCAF11-208ENST00000546534 CDIP1Q9H305 208 aa8.62□□□□□ -1.03
SCAF11-208ENST00000546534 MSRB1Q9NZV6 116 aa8.62□□□□□ -1.03
SCAF11-208ENST00000546534 HIGD1AQ9Y241 93 aa8.62□□□□□ -1.03
SCAF11-208ENST00000546534 ICOSQ9Y6W8 199 aa8.62□□□□□ -1.03
SCAF11-208ENST00000546534 J3KRW8 73 aa8.61□□□□□ -1.03
SCAF11-208ENST00000546534 AKR1C1Q04828 323 aa8.61□□□□□ -1.03
SCAF11-208ENST00000546534 OR51S1Q8NGJ8 323 aa8.61□□□□□ -1.03
SCAF11-208ENST00000546534 C15orf40Q8WUR7 153 aa8.61□□□□□ -1.03
SCAF11-208ENST00000546534 GSN-AS1Q9NRJ2 163 aa8.61□□□□□ -1.03
SCAF11-208ENST00000546534 TRAV9-2A0A087WT02 112 aa8.6□□□□□ -1.03
SCAF11-208ENST00000546534 IGLV5-52A0A0A0MRZ9 124 aa8.6□□□□□ -1.03
SCAF11-208ENST00000546534 TRAV12-3A0A0B4J271 114 aa8.6□□□□□ -1.03
SCAF11-208ENST00000546534 PRAC2D3DTV9 90 aa8.6□□□□□ -1.03
SCAF11-208ENST00000546534 HYPMO75409 117 aa8.6□□□□□ -1.03
SCAF11-208ENST00000546534 IL5P05113 134 aa8.6□□□□□ -1.03
SCAF11-208ENST00000546534 SNRPCP09234 159 aaKnown RBP8.6□□□□□ -1.03
SCAF11-208ENST00000546534 OR5G3P0C626 314 aa8.6□□□□□ -1.03
SCAF11-208ENST00000546534 SSBP1Q04837 148 aaKnown RBP8.6□□□□□ -1.03
SCAF11-208ENST00000546534 LYPD5Q6UWN5 251 aa8.6□□□□□ -1.03
SCAF11-208ENST00000546534 CYP2G1PQ6ZSU1 146 aa8.6□□□□□ -1.03
SCAF11-208ENST00000546534 SYT8Q8NBV8 401 aa8.6□□□□□ -1.03
SCAF11-208ENST00000546534 LINC00467Q9BRT7 94 aa8.6□□□□□ -1.03
SCAF11-208ENST00000546534 FUNDC2Q9BWH2 189 aa8.6□□□□□ -1.03
SCAF11-208ENST00000546534 ZNF331Q9NQX6 463 aaPredicted RBP8.6□□□□□ -1.03
SCAF11-208ENST00000546534 FAM30AQ9NZY2 134 aa8.6□□□□□ -1.03
SCAF11-208ENST00000546534 FUT9Q9Y231 359 aa8.6□□□□□ -1.03
SCAF11-208ENST00000546534 LY96Q9Y6Y9 160 aa8.6□□□□□ -1.03
SCAF11-208ENST00000546534 PMS2P5A8MQ11 134 aa8.59□□□□□ -1.03
SCAF11-208ENST00000546534 NPIPB6E9PJ23 425 aa8.59□□□□□ -1.03
SCAF11-208ENST00000546534 MRPS12O15235 138 aaKnown RBP8.59□□□□□ -1.03
SCAF11-208ENST00000546534 ZNF324O75467 553 aaPredicted RBP8.59□□□□□ -1.03
SCAF11-208ENST00000546534 AKAIN1P0CW23 69 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms