RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 K7EQM0 130 aa14.09□□□□□ -0.15
VIM-209ENST00000544301 PRB4P10163 310 aaPredicted RBP14.09□□□□□ -0.15
VIM-209ENST00000544301 GNLYP22749 145 aa14.09□□□□□ -0.15
VIM-209ENST00000544301 PDE6HQ13956 83 aa14.09□□□□□ -0.15
VIM-209ENST00000544301 PRR31Q5SQ13 230 aa14.09□□□□□ -0.15
VIM-209ENST00000544301 ASCL2Q99929 193 aa14.09□□□□□ -0.15
VIM-209ENST00000544301 MED13LQ71F56 2210 aa14.09□□□□□ -0.15
VIM-209ENST00000544301 SVEP1Q4LDE5 3571 aa14.08□□□□□ -0.16
VIM-209ENST00000544301 M0R3E3 92 aa14.08□□□□□ -0.16
VIM-209ENST00000544301 CTSGP08311 255 aa14.08□□□□□ -0.16
VIM-209ENST00000544301 SAA4P35542 130 aa14.08□□□□□ -0.16
VIM-209ENST00000544301 NTF3P20783 257 aa14.08□□□□□ -0.16
VIM-209ENST00000544301 LBHQ53QV2 105 aaPredicted RBP14.08□□□□□ -0.16
VIM-209ENST00000544301 C20orf144Q9BQM9 153 aa14.08□□□□□ -0.16
VIM-209ENST00000544301 C2orf88Q9BSF0 95 aa14.08□□□□□ -0.16
VIM-209ENST00000544301 TXN2Q99757 166 aa14.07□□□□□ -0.16
VIM-209ENST00000544301 VAMP8Q9BV40 100 aa14.07□□□□□ -0.16
VIM-209ENST00000544301 OVOL3O00110 214 aa14.06□□□□□ -0.16
VIM-209ENST00000544301 FOXA3P55318 350 aaPredicted RBP14.06□□□□□ -0.16
VIM-209ENST00000544301 AAMDCQ9H7C9 122 aa14.06□□□□□ -0.16
VIM-209ENST00000544301 PAM16Q9Y3D7 125 aa14.06□□□□□ -0.16
VIM-209ENST00000544301 A0A1B0GV90 55 aa14.06□□□□□ -0.16
VIM-209ENST00000544301 SCGB2A1O75556 95 aa14.06□□□□□ -0.16
VIM-209ENST00000544301 APOHP02749 345 aaPredicted RBP14.06□□□□□ -0.16
VIM-209ENST00000544301 C3orf79P0CE67 100 aa14.06□□□□□ -0.16
VIM-209ENST00000544301 FAM110DQ8TAY7 271 aaPredicted RBP14.06□□□□□ -0.16
VIM-209ENST00000544301 LPAR2Q9HBW0 351 aa14.06□□□□□ -0.16
VIM-209ENST00000544301 HAX1O00165 279 aa14.05□□□□□ -0.16
VIM-209ENST00000544301 CRIP1P50238 77 aa14.05□□□□□ -0.16
VIM-209ENST00000544301 LINC00469Q8N7U9 141 aa14.05□□□□□ -0.16
VIM-209ENST00000544301 TMUB1Q9BVT8 246 aa14.05□□□□□ -0.16
VIM-209ENST00000544301 HSBP1O75506 76 aa14.05□□□□□ -0.16
VIM-209ENST00000544301 RPL7P18124 248 aaKnown RBP14.05□□□□□ -0.16
VIM-209ENST00000544301 RNASEKQ6P5S7 137 aaKnown RBP14.05□□□□□ -0.16
VIM-209ENST00000544301 UNQ5815/PRO19632Q6UWF5 114 aa14.05□□□□□ -0.16
VIM-209ENST00000544301 BORCS7Q96B45 105 aa14.05□□□□□ -0.16
VIM-209ENST00000544301 RABAC1Q9UI14 185 aa14.05□□□□□ -0.16
VIM-209ENST00000544301 EREGO14944 169 aa14.04□□□□□ -0.16
VIM-209ENST00000544301 ATP6V0E1O15342 81 aa14.04□□□□□ -0.16
VIM-209ENST00000544301 PSG9Q00887 426 aa14.04□□□□□ -0.16
VIM-209ENST00000544301 ECSCRQ19T08 205 aa14.04□□□□□ -0.16
VIM-209ENST00000544301 PIP4P2Q8N4L2 257 aa14.04□□□□□ -0.16
VIM-209ENST00000544301 URB1-AS1Q96HZ7 61 aa14.04□□□□□ -0.16
VIM-209ENST00000544301 SH2D7A6NKC9 451 aaPredicted RBP14.03□□□□□ -0.16
VIM-209ENST00000544301 NPFFO15130 113 aa14.03□□□□□ -0.16
VIM-209ENST00000544301 CSN1S1P47710 185 aa14.03□□□□□ -0.16
VIM-209ENST00000544301 KLK9Q2XQG4 91 aa14.03□□□□□ -0.16
VIM-209ENST00000544301 C8orf49Q96NF6 230 aa14.03□□□□□ -0.16
VIM-209ENST00000544301 KLK9Q9UKQ9 250 aa14.03□□□□□ -0.16
VIM-209ENST00000544301 CHEK1O14757 476 aa14.03□□□□□ -0.16
VIM-209ENST00000544301 C15orf32Q32M92 178 aa14.03□□□□□ -0.16
VIM-209ENST00000544301 ZNF502Q8TBZ5 544 aa14.03□□□□□ -0.16
VIM-209ENST00000544301 MIEN1Q9BRT3 115 aa14.03□□□□□ -0.16
VIM-209ENST00000544301 SMAD5-AS1Q9Y6J3 95 aa14.03□□□□□ -0.16
VIM-209ENST00000544301 LOC102724200A0A096LPH7 203 aaPredicted RBP14.02□□□□□ -0.16
VIM-209ENST00000544301 CENPVL3A0A0U1RRI6 287 aa14.02□□□□□ -0.16
VIM-209ENST00000544301 SERTM2A0A1B0GWG4 89 aa14.02□□□□□ -0.16
VIM-209ENST00000544301 M0R2Z0 102 aa14.02□□□□□ -0.16
VIM-209ENST00000544301 IGHV4-39P01824 125 aa14.02□□□□□ -0.16
VIM-209ENST00000544301 SNHG12Q9BXW3 62 aa14.02□□□□□ -0.16
VIM-209ENST00000544301 A0A1B0GUT8 65 aa14.02□□□□□ -0.17
VIM-209ENST00000544301 FAM181BA6NEQ2 426 aa14.02□□□□□ -0.17
VIM-209ENST00000544301 GPR183P32249 361 aa14.02□□□□□ -0.17
VIM-209ENST00000544301 RHOGP84095 191 aa14.02□□□□□ -0.17
VIM-209ENST00000544301 AKAP6Q13023 2319 aa14.01□□□□□ -0.17
VIM-209ENST00000544301 IGHV3-35A0A0C4DH35 117 aa14.01□□□□□ -0.17
VIM-209ENST00000544301 ZNF705AQ6ZN79 300 aaPredicted RBP14.01□□□□□ -0.17
VIM-209ENST00000544301 NDFIP1Q9BT67 221 aa14.01□□□□□ -0.17
VIM-209ENST00000544301 IGHV3OR16-8A0A075B7F1 116 aa14□□□□□ -0.17
VIM-209ENST00000544301 IGKV2-40A0A087WW87 121 aaPredicted RBP14□□□□□ -0.17
VIM-209ENST00000544301 LINC01548A6NM66 108 aa14□□□□□ -0.17
VIM-209ENST00000544301 IGKV2D-40P01614 121 aaPredicted RBP14□□□□□ -0.17
VIM-209ENST00000544301 ARMS2P0C7Q2 107 aa14□□□□□ -0.17
VIM-209ENST00000544301 FAM162BQ5T6X4 162 aa14□□□□□ -0.17
VIM-209ENST00000544301 ARL6IP6Q8N6S5 226 aa14□□□□□ -0.17
VIM-209ENST00000544301 M0QZ24 198 aa14□□□□□ -0.17
VIM-209ENST00000544301 M0R143 59 aa14□□□□□ -0.17
VIM-209ENST00000544301 CLEC3BP05452 202 aa14□□□□□ -0.17
VIM-209ENST00000544301 CT45A10P0DMU9 189 aa14□□□□□ -0.17
VIM-209ENST00000544301 RAB4AP20338 218 aa14□□□□□ -0.17
VIM-209ENST00000544301 CTRLP40313 264 aa14□□□□□ -0.17
VIM-209ENST00000544301 EBLN2Q6P2I7 272 aa14□□□□□ -0.17
VIM-209ENST00000544301 G3V318 75 aa13.99□□□□□ -0.17
VIM-209ENST00000544301 RIGQ13278 110 aa13.99□□□□□ -0.17
VIM-209ENST00000544301 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.99□□□□□ -0.17
VIM-209ENST00000544301 IGHG4P01861 327 aa13.99□□□□□ -0.17
VIM-209ENST00000544301 S100A7P31151 101 aa13.99□□□□□ -0.17
VIM-209ENST00000544301 ZFAND3Q9H8U3 227 aa13.99□□□□□ -0.17
VIM-209ENST00000544301 PAX8Q06710 450 aa13.98□□□□□ -0.17
VIM-209ENST00000544301 SPATA45Q537H7 98 aa13.98□□□□□ -0.17
VIM-209ENST00000544301 LCN12Q6JVE5 192 aa13.98□□□□□ -0.17
VIM-209ENST00000544301 COX8CQ7Z4L0 72 aa13.98□□□□□ -0.17
VIM-209ENST00000544301 C5orf56Q8N8D9 126 aa13.98□□□□□ -0.17
VIM-209ENST00000544301 GATD1Q8NB37 220 aa13.98□□□□□ -0.17
VIM-209ENST00000544301 CHCHD1Q96BP2 118 aaKnown RBP13.98□□□□□ -0.17
VIM-209ENST00000544301 Q6AWC8 147 aa13.97□□□□□ -0.17
VIM-209ENST00000544301 IGFL4Q6B9Z1 124 aa13.97□□□□□ -0.17
VIM-209ENST00000544301 CCDC140Q96MF4 163 aa13.97□□□□□ -0.17
VIM-209ENST00000544301 PKD1L2Q7Z442 2459 aa13.97□□□□□ -0.17
VIM-209ENST00000544301 A0A1B0GW15 77 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 93 ms