RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 TIMM23O14925 209 aa7.11□□□□□ -1.27
YBX3-208ENST00000540447 RNF144BQ7Z419 303 aa7.11□□□□□ -1.27
YBX3-208ENST00000540447 C5orf24Q7Z6I8 188 aa7.11□□□□□ -1.27
YBX3-208ENST00000540447 LINC00643Q86TS7 51 aa7.11□□□□□ -1.27
YBX3-208ENST00000540447 DOCK2Q92608 1830 aa7.11□□□□□ -1.27
YBX3-208ENST00000540447 TRBV19A0A075B6N1 114 aa7.11□□□□□ -1.27
YBX3-208ENST00000540447 FOXF2Q12947 444 aa7.11□□□□□ -1.27
YBX3-208ENST00000540447 TMEM75Q8N9X5 138 aa7.11□□□□□ -1.27
YBX3-208ENST00000540447 WFDC9Q8NEX5 89 aa7.11□□□□□ -1.27
YBX3-208ENST00000540447 hADV29S1A0JD25 119 aa7.1□□□□□ -1.27
YBX3-208ENST00000540447 EFNA4P52798 201 aa7.1□□□□□ -1.27
YBX3-208ENST00000540447 TRGV11A0A075B6L2 103 aa7.1□□□□□ -1.27
YBX3-208ENST00000540447 CENPVL3A0A0U1RRI6 287 aa7.1□□□□□ -1.27
YBX3-208ENST00000540447 OVOL1O14753 267 aa7.1□□□□□ -1.27
YBX3-208ENST00000540447 CRLF1O75462 422 aa7.1□□□□□ -1.27
YBX3-208ENST00000540447 IL15RAQ13261 267 aa7.1□□□□□ -1.27
YBX3-208ENST00000540447 LINC01587Q99440 93 aa7.1□□□□□ -1.27
YBX3-208ENST00000540447 TTTY12Q9BZ98 90 aa7.1□□□□□ -1.27
YBX3-208ENST00000540447 SIT1Q9Y3P8 196 aa7.1□□□□□ -1.27
YBX3-208ENST00000540447 ASXL3Q9C0F0 2248 aa7.1□□□□□ -1.27
YBX3-208ENST00000540447 TRAV13-2A0A0B4J235 113 aa7.1□□□□□ -1.27
YBX3-208ENST00000540447 ZNF784Q8NCA9 323 aaPredicted RBP7.1□□□□□ -1.27
YBX3-208ENST00000540447 TRPM6Q9BX84 2022 aa7.1□□□□□ -1.27
YBX3-208ENST00000540447 MDC1Q14676 2089 aaKnown RBP7.1□□□□□ -1.27
YBX3-208ENST00000540447 E9PQ18 207 aa7.1□□□□□ -1.27
YBX3-208ENST00000540447 PRB2P02812 416 aaPredicted RBP7.1□□□□□ -1.27
YBX3-208ENST00000540447 SMRP1Q8NCR6 262 aa7.1□□□□□ -1.27
YBX3-208ENST00000540447 TMEM133Q9H2Q1 129 aa7.1□□□□□ -1.27
YBX3-208ENST00000540447 IGKV1-27A0A075B6S5 117 aa7.09□□□□□ -1.27
YBX3-208ENST00000540447 TRGV3P03979 118 aa7.09□□□□□ -1.27
YBX3-208ENST00000540447 ASPHD1Q5U4P2 390 aa7.09□□□□□ -1.27
YBX3-208ENST00000540447 LINC00694P0DN24 101 aa7.09□□□□□ -1.27
YBX3-208ENST00000540447 C1orf162Q8NEQ5 155 aaPredicted RBP7.09□□□□□ -1.27
YBX3-208ENST00000540447 HEATR1Q9H583 2144 aaKnown RBP7.09□□□□□ -1.27
YBX3-208ENST00000540447 PLA2G2EQ9NZK7 142 aa7.09□□□□□ -1.27
YBX3-208ENST00000540447 C10orf105Q8TEF2 133 aa7.09□□□□□ -1.27
YBX3-208ENST00000540447 ICOSQ9Y6W8 199 aa7.09□□□□□ -1.27
YBX3-208ENST00000540447 KIF26BQ2KJY2 2108 aa7.09□□□□□ -1.27
YBX3-208ENST00000540447 TNRC6CQ9HCJ0 1690 aaKnown RBP7.09□□□□□ -1.27
YBX3-208ENST00000540447 Q6ZS49 121 aa7.09□□□□□ -1.27
YBX3-208ENST00000540447 HRCT1Q6UXD1 115 aa7.09□□□□□ -1.28
YBX3-208ENST00000540447 MUSTN1Q8IVN3 82 aa7.09□□□□□ -1.28
YBX3-208ENST00000540447 RETNQ9HD89 108 aa7.09□□□□□ -1.28
YBX3-208ENST00000540447 IGHV1-45A0A0A0MS14 117 aa7.08□□□□□ -1.28
YBX3-208ENST00000540447 H3BT86 120 aa7.08□□□□□ -1.28
YBX3-208ENST00000540447 EGR2P11161 476 aaPredicted RBP7.08□□□□□ -1.28
YBX3-208ENST00000540447 C6orf226Q5I0X4 101 aa7.08□□□□□ -1.28
YBX3-208ENST00000540447 C8orf49Q96NF6 230 aa7.08□□□□□ -1.28
YBX3-208ENST00000540447 CXCL5P42830 114 aa7.08□□□□□ -1.28
YBX3-208ENST00000540447 NDPQ00604 133 aa7.08□□□□□ -1.28
YBX3-208ENST00000540447 RNF152Q8N8N0 203 aa7.08□□□□□ -1.28
YBX3-208ENST00000540447 FAM168AQ92567 244 aa7.08□□□□□ -1.28
YBX3-208ENST00000540447 NTN3O00634 580 aaPredicted RBP7.08□□□□□ -1.28
YBX3-208ENST00000540447 ZNF837Q96EG3 531 aaPredicted RBP7.08□□□□□ -1.28
YBX3-208ENST00000540447 TRAV12-2A0A075B6T6 113 aa7.08□□□□□ -1.28
YBX3-208ENST00000540447 IGLC6P0CF74 106 aa7.08□□□□□ -1.28
YBX3-208ENST00000540447 HS3ST6Q96QI5 342 aa7.08□□□□□ -1.28
YBX3-208ENST00000540447 CHCHD2Q9Y6H1 151 aaPredicted RBP7.08□□□□□ -1.28
YBX3-208ENST00000540447 ARAP2Q8WZ64 1704 aa7.08□□□□□ -1.28
YBX3-208ENST00000540447 WDR81Q562E7 1941 aa7.08□□□□□ -1.28
YBX3-208ENST00000540447 SHISA2Q6UWI4 295 aa7.08□□□□□ -1.28
YBX3-208ENST00000540447 SCN5AQ14524 2016 aa7.07□□□□□ -1.28
YBX3-208ENST00000540447 ARFGEF1Q9Y6D6 1849 aa7.07□□□□□ -1.28
YBX3-208ENST00000540447 LTAP01374 205 aa7.07□□□□□ -1.28
YBX3-208ENST00000540447 CELA2AP08217 269 aa7.07□□□□□ -1.28
YBX3-208ENST00000540447 ERCC8Q13216 396 aa7.07□□□□□ -1.28
YBX3-208ENST00000540447 C10orf55Q5SWW7 151 aa7.07□□□□□ -1.28
YBX3-208ENST00000540447 TRPT1Q86TN4 253 aaKnown RBP7.07□□□□□ -1.28
YBX3-208ENST00000540447 LINC00312Q9Y6C7 94 aa7.07□□□□□ -1.28
YBX3-208ENST00000540447 LINC00473A8K010 186 aa7.07□□□□□ -1.28
YBX3-208ENST00000540447 CRYGSP22914 178 aa7.07□□□□□ -1.28
YBX3-208ENST00000540447 FAM216BQ8N7L0 139 aa7.07□□□□□ -1.28
YBX3-208ENST00000540447 ZNF581Q9P0T4 197 aa7.07□□□□□ -1.28
YBX3-208ENST00000540447 COL11A1P12107 1806 aaPredicted RBP7.07□□□□□ -1.28
YBX3-208ENST00000540447 TRBV6-6A0A0A6YYG2 114 aa7.07□□□□□ -1.28
YBX3-208ENST00000540447 TRAV26-2A0A0B4J265 109 aa7.07□□□□□ -1.28
YBX3-208ENST00000540447 Q8N1Y9 231 aa7.07□□□□□ -1.28
YBX3-208ENST00000540447 C1orf159Q96HA4 380 aa7.07□□□□□ -1.28
YBX3-208ENST00000540447 TTTY13Q9BZ97 58 aa7.07□□□□□ -1.28
YBX3-208ENST00000540447 ORMDL1Q9P0S3 153 aa7.07□□□□□ -1.28
YBX3-208ENST00000540447 SIGLEC1Q9BZZ2 1709 aa7.07□□□□□ -1.28
YBX3-208ENST00000540447 TRGV2A0A075B6R0 118 aa7.07□□□□□ -1.28
YBX3-208ENST00000540447 IGHV3-73A0A0B4J1V6 119 aa7.07□□□□□ -1.28
YBX3-208ENST00000540447 MYOD1P15172 320 aa7.07□□□□□ -1.28
YBX3-208ENST00000540447 MLANAQ16655 118 aa7.07□□□□□ -1.28
YBX3-208ENST00000540447 SMIM2Q9BVW6 85 aa7.07□□□□□ -1.28
YBX3-208ENST00000540447 COL14A1Q05707 1796 aaKnown RBP7.07□□□□□ -1.28
YBX3-208ENST00000540447 A0A087WWL8 130 aa7.06□□□□□ -1.28
YBX3-208ENST00000540447 FAM201AQ5SY85 155 aa7.06□□□□□ -1.28
YBX3-208ENST00000540447 DIDO1Q9BTC0 2240 aaKnown RBP7.06□□□□□ -1.28
YBX3-208ENST00000540447 CDK2AP2O75956 126 aa7.06□□□□□ -1.28
YBX3-208ENST00000540447 DUSP14O95147 198 aaKnown RBP7.06□□□□□ -1.28
YBX3-208ENST00000540447 CECR9P0C854 216 aa7.06□□□□□ -1.28
YBX3-208ENST00000540447 F8WEM9 126 aa7.06□□□□□ -1.28
YBX3-208ENST00000540447 C16orf97H3BN30 126 aa7.06□□□□□ -1.28
YBX3-208ENST00000540447 TFF1P04155 84 aa7.06□□□□□ -1.28
YBX3-208ENST00000540447 SIGLEC15Q6ZMC9 328 aa7.06□□□□□ -1.28
YBX3-208ENST00000540447 Q71RC1 249 aaPredicted RBP7.06□□□□□ -1.28
YBX3-208ENST00000540447 C20orf197Q8N268 126 aa7.06□□□□□ -1.28
YBX3-208ENST00000540447 LRRK1Q38SD2 2015 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms