RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 IGLC1P0CG04 106 aa8.6□□□□□ -1.03
LIMCH1-205ENST00000503057 SSBP2P81877 361 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-205ENST00000503057 LINC00527Q9UJ94 153 aa8.6□□□□□ -1.03
LIMCH1-205ENST00000503057 PRB4P10163 310 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-205ENST00000503057 EVI2AP22794 236 aa8.6□□□□□ -1.03
LIMCH1-205ENST00000503057 FBLN7Q53RD9 439 aa8.6□□□□□ -1.03
LIMCH1-205ENST00000503057 DMRTA1Q5VZB9 504 aa8.6□□□□□ -1.03
LIMCH1-205ENST00000503057 LINC00477Q96M19 166 aa8.6□□□□□ -1.03
LIMCH1-205ENST00000503057 UNQ6494/PRO21346Q6UXR6 183 aa8.6□□□□□ -1.03
LIMCH1-205ENST00000503057 FNDC4Q9H6D8 234 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-205ENST00000503057 B4DSR2 109 aa8.6□□□□□ -1.03
LIMCH1-205ENST00000503057 NDUFS8O00217 210 aa8.6□□□□□ -1.03
LIMCH1-205ENST00000503057 CD7P09564 240 aa8.6□□□□□ -1.03
LIMCH1-205ENST00000503057 PLP1P60201 277 aa8.6□□□□□ -1.03
LIMCH1-205ENST00000503057 TCF15Q12870 199 aa8.6□□□□□ -1.03
LIMCH1-205ENST00000503057 GLMPQ8WWB7 406 aa8.6□□□□□ -1.03
LIMCH1-205ENST00000503057 CNOT1A5YKK6 2376 aaKnown RBP8.59□□□□□ -1.03
LIMCH1-205ENST00000503057 IGKCP01834 107 aa8.59□□□□□ -1.03
LIMCH1-205ENST00000503057 HAX1O00165 279 aa8.59□□□□□ -1.03
LIMCH1-205ENST00000503057 LAGE3Q14657 143 aa8.59□□□□□ -1.03
LIMCH1-205ENST00000503057 PRR31Q5SQ13 230 aa8.59□□□□□ -1.03
LIMCH1-205ENST00000503057 H3BVH4 76 aa8.59□□□□□ -1.03
LIMCH1-205ENST00000503057 UBE2L6O14933 153 aa8.59□□□□□ -1.03
LIMCH1-205ENST00000503057 COX6CP09669 75 aa8.59□□□□□ -1.03
LIMCH1-205ENST00000503057 RRN3P1Q2M238 152 aa8.59□□□□□ -1.03
LIMCH1-205ENST00000503057 ODF3L1Q8IXM7 274 aa8.59□□□□□ -1.03
LIMCH1-205ENST00000503057 SHANK1Q9Y566 2161 aa8.59□□□□□ -1.03
LIMCH1-205ENST00000503057 ATP6V0E1O15342 81 aa8.59□□□□□ -1.03
LIMCH1-205ENST00000503057 NDUFA3O95167 84 aa8.59□□□□□ -1.03
LIMCH1-205ENST00000503057 ESPL1Q14674 2120 aa8.59□□□□□ -1.03
LIMCH1-205ENST00000503057 COA6Q5JTJ3 125 aaKnown RBP8.59□□□□□ -1.03
LIMCH1-205ENST00000503057 LURAP1LQ8IV03 231 aa8.59□□□□□ -1.03
LIMCH1-205ENST00000503057 LINC01549A6NIU2 74 aa8.58□□□□□ -1.04
LIMCH1-205ENST00000503057 H3BUX3 64 aa8.58□□□□□ -1.04
LIMCH1-205ENST00000503057 LTAP01374 205 aa8.58□□□□□ -1.04
LIMCH1-205ENST00000503057 ARMS2P0C7Q2 107 aa8.58□□□□□ -1.04
LIMCH1-205ENST00000503057 CD33P20138 364 aa8.58□□□□□ -1.04
LIMCH1-205ENST00000503057 Q6ZWC4 215 aa8.58□□□□□ -1.04
LIMCH1-205ENST00000503057 TNFRSF18Q9Y5U5 241 aa8.58□□□□□ -1.04
LIMCH1-205ENST00000503057 IGHV3OR16-12A0A075B7B8 117 aa8.58□□□□□ -1.04
LIMCH1-205ENST00000503057 PRSS46E5RG02 174 aa8.58□□□□□ -1.04
LIMCH1-205ENST00000503057 NCR2O95944 276 aa8.58□□□□□ -1.04
LIMCH1-205ENST00000503057 SLAQ13239 276 aa8.58□□□□□ -1.04
LIMCH1-205ENST00000503057 BRD3OSQ6XYD6 125 aa8.58□□□□□ -1.04
LIMCH1-205ENST00000503057 COPS9Q8WXC6 57 aa8.58□□□□□ -1.04
LIMCH1-205ENST00000503057 LOC107984156A0A0G2JMH3 177 aa8.58□□□□□ -1.04
LIMCH1-205ENST00000503057 INS-IGF2F8WCM5 200 aa8.58□□□□□ -1.04
LIMCH1-205ENST00000503057 C1orf122Q6ZSJ8 110 aa8.58□□□□□ -1.04
LIMCH1-205ENST00000503057 ARL17AQ8IVW1 177 aa8.58□□□□□ -1.04
LIMCH1-205ENST00000503057 WIPF2Q8TF74 440 aaPredicted RBP8.58□□□□□ -1.04
LIMCH1-205ENST00000503057 DUX3Q96PT4 197 aa8.58□□□□□ -1.04
LIMCH1-205ENST00000503057 NCKAP5O14513 1909 aa8.58□□□□□ -1.04
LIMCH1-205ENST00000503057 TMEM170BQ5T4T1 132 aa8.58□□□□□ -1.04
LIMCH1-205ENST00000503057 SEC11AP67812 179 aa8.57□□□□□ -1.04
LIMCH1-205ENST00000503057 OR9G4Q8NGQ1 327 aa8.57□□□□□ -1.04
LIMCH1-205ENST00000503057 LDLRAD2Q5SZI1 272 aa8.57□□□□□ -1.04
LIMCH1-205ENST00000503057 IGFL4Q6B9Z1 124 aa8.57□□□□□ -1.04
LIMCH1-205ENST00000503057 AMMECR1LQ6DCA0 310 aa8.57□□□□□ -1.04
LIMCH1-205ENST00000503057 C8orf49Q96NF6 230 aa8.57□□□□□ -1.04
LIMCH1-205ENST00000503057 ALKBH7Q9BT30 221 aaPredicted RBP8.57□□□□□ -1.04
LIMCH1-205ENST00000503057 NDPQ00604 133 aa8.57□□□□□ -1.04
LIMCH1-205ENST00000503057 HSD52Q0P140 79 aa8.57□□□□□ -1.04
LIMCH1-205ENST00000503057 AMN1Q8IY45 258 aa8.57□□□□□ -1.04
LIMCH1-205ENST00000503057 OR11H6Q8NGC7 330 aa8.57□□□□□ -1.04
LIMCH1-205ENST00000503057 CYSLTR1Q9Y271 337 aa8.57□□□□□ -1.04
LIMCH1-205ENST00000503057 TDGF1P3P51864 188 aa8.57□□□□□ -1.04
LIMCH1-205ENST00000503057 MSMPQ1L6U9 139 aa8.57□□□□□ -1.04
LIMCH1-205ENST00000503057 ORAOV1Q8WV07 137 aa8.57□□□□□ -1.04
LIMCH1-205ENST00000503057 TECTAO75443 2155 aa8.56□□□□□ -1.04
LIMCH1-205ENST00000503057 EML6Q6ZMW3 1958 aa8.56□□□□□ -1.04
LIMCH1-205ENST00000503057 TRGV11A0A075B6L2 103 aa8.56□□□□□ -1.04
LIMCH1-205ENST00000503057 A6NNC1 897 aa8.56□□□□□ -1.04
LIMCH1-205ENST00000503057 hDV102S1A0JD36 115 aa8.56□□□□□ -1.04
LIMCH1-205ENST00000503057 CHTOPQ9Y3Y2 248 aaKnown RBP8.56□□□□□ -1.04
LIMCH1-205ENST00000503057 ERCC8Q13216 396 aa8.56□□□□□ -1.04
LIMCH1-205ENST00000503057 EIF4EBP1Q13541 118 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-205ENST00000503057 C19orf54Q5BKX5 351 aa8.56□□□□□ -1.04
LIMCH1-205ENST00000503057 ZNF295-AS1Q8N0V1 137 aa8.56□□□□□ -1.04
LIMCH1-205ENST00000503057 MRPS16Q9Y3D3 137 aaKnown RBP8.56□□□□□ -1.04
LIMCH1-205ENST00000503057 C22orf46C9J442 243 aa8.56□□□□□ -1.04
LIMCH1-205ENST00000503057 IFI27P40305 119 aaPredicted RBP8.56□□□□□ -1.04
LIMCH1-205ENST00000503057 CEP250Q9BV73 2442 aa8.55□□□□□ -1.04
LIMCH1-205ENST00000503057 WISP2O76076 250 aa8.55□□□□□ -1.04
LIMCH1-205ENST00000503057 GEMIN7Q9H840 131 aaKnown RBP8.55□□□□□ -1.04
LIMCH1-205ENST00000503057 IGHV1-69DA0A0B4J2H0 117 aa8.55□□□□□ -1.04
LIMCH1-205ENST00000503057 IGHV1-69P01742 117 aa8.55□□□□□ -1.04
LIMCH1-205ENST00000503057 SLC25A16P16260 332 aa8.55□□□□□ -1.04
LIMCH1-205ENST00000503057 DPH3P1Q9H4G8 78 aa8.55□□□□□ -1.04
LIMCH1-205ENST00000503057 EREGO14944 169 aa8.55□□□□□ -1.04
LIMCH1-205ENST00000503057 CIRBPQ14011 172 aaKnown RBP8.55□□□□□ -1.04
LIMCH1-205ENST00000503057 FAM104BQ5XKR9 115 aa8.55□□□□□ -1.04
LIMCH1-205ENST00000503057 ZNF491Q8N8L2 437 aa8.55□□□□□ -1.04
LIMCH1-205ENST00000503057 DOCK11Q5JSL3 2073 aa8.55□□□□□ -1.04
LIMCH1-205ENST00000503057 IGLV2-23P01705 113 aa8.55□□□□□ -1.04
LIMCH1-205ENST00000503057 NPBQ8NG41 125 aa8.55□□□□□ -1.04
LIMCH1-205ENST00000503057 LINC00574Q9H8X3 128 aa8.55□□□□□ -1.04
LIMCH1-205ENST00000503057 SPCS1Q9Y6A9 102 aa8.55□□□□□ -1.04
LIMCH1-205ENST00000503057 CPAMD8Q8IZJ3 1885 aa8.54□□□□□ -1.04
LIMCH1-205ENST00000503057 ITLN2Q8WWU7 325 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-205ENST00000503057 ZC2HC1AQ96GY0 325 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms