RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 FOLR3P41439 243 aa2.66□□□□□ -1.98
UBR3-208ENST00000474426 LINC00205P59089 165 aa2.66□□□□□ -1.98
UBR3-208ENST00000474426 PRR3P79522 188 aaKnown RBP2.66□□□□□ -1.98
UBR3-208ENST00000474426 FAM78AQ5JUQ0 283 aa2.66□□□□□ -1.98
UBR3-208ENST00000474426 PHF5AQ7RTV0 110 aaKnown RBP2.66□□□□□ -1.98
UBR3-208ENST00000474426 LINC01600Q96MT4 127 aa2.66□□□□□ -1.98
UBR3-208ENST00000474426 CHAC1Q9BUX1 264 aa2.66□□□□□ -1.98
UBR3-208ENST00000474426 CALYQ9NYX4 217 aa2.66□□□□□ -1.98
UBR3-208ENST00000474426 LINC00474Q9P2X8 69 aa2.66□□□□□ -1.98
UBR3-208ENST00000474426 MOB4Q9Y3A3 225 aa2.66□□□□□ -1.98
UBR3-208ENST00000474426 ARL2-SNX15V9GYD0 113 aa2.66□□□□□ -1.98
UBR3-208ENST00000474426 LRRK1Q38SD2 2015 aa2.66□□□□□ -1.98
UBR3-208ENST00000474426 TRAV2A0A0B4J234 112 aa2.66□□□□□ -1.98
UBR3-208ENST00000474426 SUMO2P61956 95 aaKnown RBP2.66□□□□□ -1.98
UBR3-208ENST00000474426 NOXRED1Q6NXP6 359 aa2.66□□□□□ -1.98
UBR3-208ENST00000474426 Q6ZS49 121 aa2.66□□□□□ -1.98
UBR3-208ENST00000474426 VSIG2Q96IQ7 327 aa2.66□□□□□ -1.98
UBR3-208ENST00000474426 LYZL4Q96KX0 146 aa2.66□□□□□ -1.98
UBR3-208ENST00000474426 TIMM17AQ99595 171 aa2.66□□□□□ -1.98
UBR3-208ENST00000474426 ZNF736B4DX44 427 aaPredicted RBP2.65□□□□□ -1.98
UBR3-208ENST00000474426 TMEM256-PLSCR3K7ERE1 68 aa2.65□□□□□ -1.98
UBR3-208ENST00000474426 CXCL5P42830 114 aa2.65□□□□□ -1.98
UBR3-208ENST00000474426 CYP2G1PQ6ZSU1 146 aa2.65□□□□□ -1.98
UBR3-208ENST00000474426 Q6ZVQ6 151 aa2.65□□□□□ -1.98
UBR3-208ENST00000474426 LINC00528Q8N1L1 170 aa2.65□□□□□ -1.98
UBR3-208ENST00000474426 TMEM230Q96A57 120 aa2.65□□□□□ -1.98
UBR3-208ENST00000474426 C18orf12Q96KH6 178 aa2.65□□□□□ -1.98
UBR3-208ENST00000474426 THADAQ6YHU6 1953 aa2.65□□□□□ -1.98
UBR3-208ENST00000474426 NUP98P52948 1817 aa2.65□□□□□ -1.98
UBR3-208ENST00000474426 MED19A0JLT2 244 aaPredicted RBP2.65□□□□□ -1.99
UBR3-208ENST00000474426 HLA-DQA1P01909 254 aa2.65□□□□□ -1.99
UBR3-208ENST00000474426 FXYD2P54710 66 aa2.65□□□□□ -1.99
UBR3-208ENST00000474426 RPL23P62829 140 aaKnown RBP2.65□□□□□ -1.99
UBR3-208ENST00000474426 Q6ZS46 218 aa2.65□□□□□ -1.99
UBR3-208ENST00000474426 FAM19A2Q8N3H0 131 aa2.65□□□□□ -1.99
UBR3-208ENST00000474426 MRPL18Q9H0U6 180 aaKnown RBP2.65□□□□□ -1.99
UBR3-208ENST00000474426 MAP6D1Q9H9H5 199 aa2.65□□□□□ -1.99
UBR3-208ENST00000474426 CKLFQ9UBR5 152 aa2.65□□□□□ -1.99
UBR3-208ENST00000474426 PCDH15Q96QU1 1955 aa2.65□□□□□ -1.99
UBR3-208ENST00000474426 FNDC1Q4ZHG4 1894 aaPredicted RBP2.65□□□□□ -1.99
UBR3-208ENST00000474426 MGST3O14880 152 aa2.65□□□□□ -1.99
UBR3-208ENST00000474426 CST7O76096 145 aa2.65□□□□□ -1.99
UBR3-208ENST00000474426 ZNF20P17024 532 aa2.65□□□□□ -1.99
UBR3-208ENST00000474426 HBBP68871 147 aa2.65□□□□□ -1.99
UBR3-208ENST00000474426 LRRC29Q8WV35 223 aa2.65□□□□□ -1.99
UBR3-208ENST00000474426 NRAPQ86VF7 1730 aa2.65□□□□□ -1.99
UBR3-208ENST00000474426 DLEC1Q9Y238 1755 aa2.65□□□□□ -1.99
UBR3-208ENST00000474426 A0A1W2PQD3 144 aa2.64□□□□□ -1.99
UBR3-208ENST00000474426 CCL16O15467 120 aa2.64□□□□□ -1.99
UBR3-208ENST00000474426 HLA-DPB1P04440 258 aa2.64□□□□□ -1.99
UBR3-208ENST00000474426 LINC01545Q5VT33 79 aa2.64□□□□□ -1.99
UBR3-208ENST00000474426 FAM219BQ5XKK7 198 aa2.64□□□□□ -1.99
UBR3-208ENST00000474426 C22orf34Q6ZV56 151 aa2.64□□□□□ -1.99
UBR3-208ENST00000474426 MCEEQ96PE7 176 aa2.64□□□□□ -1.99
UBR3-208ENST00000474426 HS3ST6Q96QI5 342 aa2.64□□□□□ -1.99
UBR3-208ENST00000474426 Q9H3A6 140 aa2.64□□□□□ -1.99
UBR3-208ENST00000474426 TDRD6O60522 2096 aaKnown RBP2.64□□□□□ -1.99
UBR3-208ENST00000474426 BRWD3Q6RI45 1802 aa2.64□□□□□ -1.99
UBR3-208ENST00000474426 COL1A1P02452 1464 aaPredicted RBP2.64□□□□□ -1.99
UBR3-208ENST00000474426 ADAMTS7Q9UKP4 1686 aa2.64□□□□□ -1.99
UBR3-208ENST00000474426 TRBV27A0A0K0K1C4 114 aa2.64□□□□□ -1.99
UBR3-208ENST00000474426 TRIAP1O43715 76 aa2.64□□□□□ -1.99
UBR3-208ENST00000474426 NXPH3O95157 252 aa2.64□□□□□ -1.99
UBR3-208ENST00000474426 CCL23P55773 120 aa2.64□□□□□ -1.99
UBR3-208ENST00000474426 FHL2Q14192 279 aa2.64□□□□□ -1.99
UBR3-208ENST00000474426 LYPD5Q6UWN5 251 aa2.64□□□□□ -1.99
UBR3-208ENST00000474426 MARCH3Q86UD3 253 aa2.64□□□□□ -1.99
UBR3-208ENST00000474426 HDHD3Q9BSH5 251 aaPredicted RBP2.64□□□□□ -1.99
UBR3-208ENST00000474426 PTPRSQ13332 1948 aa2.64□□□□□ -1.99
UBR3-208ENST00000474426 EML5Q05BV3 1969 aa2.64□□□□□ -1.99
UBR3-208ENST00000474426 IGKV1-9A0A0C4DH69 117 aa2.64□□□□□ -1.99
UBR3-208ENST00000474426 PGPA6NDG6 321 aa2.64□□□□□ -1.99
UBR3-208ENST00000474426 ATOX1O00244 68 aa2.64□□□□□ -1.99
UBR3-208ENST00000474426 TIMM17BO60830 172 aa2.64□□□□□ -1.99
UBR3-208ENST00000474426 LGALS3P17931 250 aaKnown RBP2.64□□□□□ -1.99
UBR3-208ENST00000474426 FOXL2NBQ6ZUU3 175 aa2.64□□□□□ -1.99
UBR3-208ENST00000474426 LCA10Q71F78 164 aa2.64□□□□□ -1.99
UBR3-208ENST00000474426 C5orf38Q86SI9 138 aa2.64□□□□□ -1.99
UBR3-208ENST00000474426 ZNF329Q86UD4 541 aa2.64□□□□□ -1.99
UBR3-208ENST00000474426 OR5AS1Q8N127 324 aa2.64□□□□□ -1.99
UBR3-208ENST00000474426 NXT2Q9NPJ8 142 aaKnown RBP2.64□□□□□ -1.99
UBR3-208ENST00000474426 GREB1Q4ZG55 1949 aa2.64□□□□□ -1.99
UBR3-208ENST00000474426 NCOA6Q14686 2063 aaPredicted RBP2.64□□□□□ -1.99
UBR3-208ENST00000474426 TRBV20OR9-2A0A075B6H5 130 aa2.63□□□□□ -1.99
UBR3-208ENST00000474426 EIF4EBP3O60516 100 aaPredicted RBP2.63□□□□□ -1.99
UBR3-208ENST00000474426 LMO4P61968 165 aa2.63□□□□□ -1.99
UBR3-208ENST00000474426 CYCSP99999 105 aaKnown RBP2.63□□□□□ -1.99
UBR3-208ENST00000474426 WFDC5Q8TCV5 224 aa2.63□□□□□ -1.99
UBR3-208ENST00000474426 H1FXQ92522 213 aaKnown RBP2.63□□□□□ -1.99
UBR3-208ENST00000474426 C2orf50Q96LR7 162 aa2.63□□□□□ -1.99
UBR3-208ENST00000474426 FAM218AQ96MZ4 157 aa2.63□□□□□ -1.99
UBR3-208ENST00000474426 ABRACLQ9P1F3 81 aa2.63□□□□□ -1.99
UBR3-208ENST00000474426 THSD7AQ9UPZ6 1657 aa2.63□□□□□ -1.99
UBR3-208ENST00000474426 PCNX3Q9H6A9 2034 aa2.63□□□□□ -1.99
UBR3-208ENST00000474426 ABCA7Q8IZY2 2146 aa2.63□□□□□ -1.99
UBR3-208ENST00000474426 A0A0G2JRQ6 117 aa2.63□□□□□ -1.99
UBR3-208ENST00000474426 ZFP92A6NM28 416 aa2.63□□□□□ -1.99
UBR3-208ENST00000474426 UPK2O00526 184 aa2.63□□□□□ -1.99
UBR3-208ENST00000474426 IGHV4-31P0DP07 118 aa2.63□□□□□ -1.99
UBR3-208ENST00000474426 BRWD1-AS2P59051 145 aa2.63□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms