RNA–Protein interactions for RNA: ENST00000469670.1

TTC28-205, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 3

Gene TTC28, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-205ENST00000469670 NFE4Q86UQ8 179 aa12.45□□□□□ -0.42
TTC28-205ENST00000469670 SHANK2-AS3Q9BTD1 123 aa12.45□□□□□ -0.42
TTC28-205ENST00000469670 NXPH4O95158 308 aa12.44□□□□□ -0.42
TTC28-205ENST00000469670 GCSHP23434 173 aa12.44□□□□□ -0.42
TTC28-205ENST00000469670 LRRC20Q8TCA0 184 aa12.44□□□□□ -0.42
TTC28-205ENST00000469670 RPUSD4Q96CM3 377 aaKnown RBP12.44□□□□□ -0.42
TTC28-205ENST00000469670 PRSS46E5RG02 174 aa12.43□□□□□ -0.42
TTC28-205ENST00000469670 SSBP1Q04837 148 aaKnown RBP12.43□□□□□ -0.42
TTC28-205ENST00000469670 TMED4Q7Z7H5 227 aa12.43□□□□□ -0.42
TTC28-205ENST00000469670 VCX3AQ9NNX9 186 aa12.43□□□□□ -0.42
TTC28-205ENST00000469670 UBR4Q5T4S7 5183 aa12.42□□□□□ -0.42
TTC28-205ENST00000469670 A0A087X0K7 114 aa12.42□□□□□ -0.42
TTC28-205ENST00000469670 RAP2BP61225 183 aa12.42□□□□□ -0.42
TTC28-205ENST00000469670 GFI1BQ5VTD9 330 aa12.42□□□□□ -0.42
TTC28-205ENST00000469670 Q6ZTI0 123 aa12.42□□□□□ -0.42
TTC28-205ENST00000469670 AP3S1Q92572 193 aa12.42□□□□□ -0.42
TTC28-205ENST00000469670 PRRT1Q99946 306 aa12.42□□□□□ -0.42
TTC28-205ENST00000469670 FUNDC2Q9BWH2 189 aa12.42□□□□□ -0.42
TTC28-205ENST00000469670 PARD6GQ9BYG4 376 aaPredicted RBP12.42□□□□□ -0.42
TTC28-205ENST00000469670 HIGD1AQ9Y241 93 aa12.42□□□□□ -0.42
TTC28-205ENST00000469670 PITX3O75364 302 aa12.41□□□□□ -0.42
TTC28-205ENST00000469670 AKAIN1P0CW23 69 aa12.41□□□□□ -0.42
TTC28-205ENST00000469670 AKR1C1Q04828 323 aa12.41□□□□□ -0.42
TTC28-205ENST00000469670 OR51S1Q8NGJ8 323 aa12.41□□□□□ -0.42
TTC28-205ENST00000469670 HYPMO75409 117 aa12.4□□□□□ -0.42
TTC28-205ENST00000469670 ATP6V1G2O95670 118 aa12.4□□□□□ -0.42
TTC28-205ENST00000469670 RPP30P78346 268 aaKnown RBP12.4□□□□□ -0.42
TTC28-205ENST00000469670 SRPXP78539 464 aa12.4□□□□□ -0.42
TTC28-205ENST00000469670 DAZ2Q13117 558 aaKnown RBP12.4□□□□□ -0.42
TTC28-205ENST00000469670 TRGV2A0A075B6R0 118 aa12.39□□□□□ -0.43
TTC28-205ENST00000469670 IL5P05113 134 aa12.39□□□□□ -0.43
TTC28-205ENST00000469670 ANXA3P12429 323 aa12.39□□□□□ -0.43
TTC28-205ENST00000469670 MRPS10P82664 201 aaKnown RBP12.39□□□□□ -0.43
TTC28-205ENST00000469670 CYP2G1PQ6ZSU1 146 aa12.39□□□□□ -0.43
TTC28-205ENST00000469670 CCDC190Q86UF4 302 aa12.39□□□□□ -0.43
TTC28-205ENST00000469670 CLVS1Q8IUQ0 354 aaPredicted RBP12.39□□□□□ -0.43
TTC28-205ENST00000469670 CIB3Q96Q77 187 aaPredicted RBP12.39□□□□□ -0.43
TTC28-205ENST00000469670 A0A087WXM4 84 aa12.38□□□□□ -0.43
TTC28-205ENST00000469670 MED6O75586 246 aa12.38□□□□□ -0.43
TTC28-205ENST00000469670 OR5G3P0C626 314 aa12.38□□□□□ -0.43
TTC28-205ENST00000469670 ACOT7LQ6ZUV0 252 aa12.38□□□□□ -0.43
TTC28-205ENST00000469670 SCGB3A2Q96PL1 93 aa12.38□□□□□ -0.43
TTC28-205ENST00000469670 ICOSQ9Y6W8 199 aa12.38□□□□□ -0.43
TTC28-205ENST00000469670 TRAV9-2A0A087WT02 112 aa12.37□□□□□ -0.43
TTC28-205ENST00000469670 J3KRW8 73 aa12.37□□□□□ -0.43
TTC28-205ENST00000469670 WRBO00258 174 aa12.37□□□□□ -0.43
TTC28-205ENST00000469670 LINC00869P0C866 280 aa12.37□□□□□ -0.43
TTC28-205ENST00000469670 PLP1P60201 277 aa12.37□□□□□ -0.43
TTC28-205ENST00000469670 SMIM4Q8WVI0 70 aa12.37□□□□□ -0.43
TTC28-205ENST00000469670 TMEM70Q9BUB7 260 aa12.37□□□□□ -0.43
TTC28-205ENST00000469670 TRAV12-3A0A0B4J271 114 aa12.36□□□□□ -0.43
TTC28-205ENST00000469670 PIGBOS1A0A0B4J2F0 54 aa12.36□□□□□ -0.43
TTC28-205ENST00000469670 DUXBA0A1W2PPF3 345 aa12.36□□□□□ -0.43
TTC28-205ENST00000469670 PMS2P5A8MQ11 134 aa12.36□□□□□ -0.43
TTC28-205ENST00000469670 MRPS12O15235 138 aaKnown RBP12.36□□□□□ -0.43
TTC28-205ENST00000469670 PAX4O43316 350 aa12.36□□□□□ -0.43
TTC28-205ENST00000469670 CXCL2P19875 107 aa12.36□□□□□ -0.43
TTC28-205ENST00000469670 ANXA7P20073 488 aaKnown RBP12.36□□□□□ -0.43
TTC28-205ENST00000469670 SPANXN5Q5MJ07 72 aa12.36□□□□□ -0.43
TTC28-205ENST00000469670 PYGO2Q9BRQ0 406 aa12.36□□□□□ -0.43
TTC28-205ENST00000469670 MIXL1Q9H2W2 232 aa12.36□□□□□ -0.43
TTC28-205ENST00000469670 ZNF331Q9NQX6 463 aaPredicted RBP12.36□□□□□ -0.43
TTC28-205ENST00000469670 SCP2D1Q9UJQ7 156 aa12.36□□□□□ -0.43
TTC28-205ENST00000469670 HMCN2Q8NDA2 5059 aa12.35□□□□□ -0.43
TTC28-205ENST00000469670 SMCO3A2RU48 225 aa12.35□□□□□ -0.43
TTC28-205ENST00000469670 KRTAP29-1A8MX34 341 aaPredicted RBP12.35□□□□□ -0.43
TTC28-205ENST00000469670 PRAC2D3DTV9 90 aa12.35□□□□□ -0.43
TTC28-205ENST00000469670 SYNGR2O43760 224 aa12.35□□□□□ -0.43
TTC28-205ENST00000469670 ZNF324O75467 553 aaPredicted RBP12.35□□□□□ -0.43
TTC28-205ENST00000469670 LYPD5Q6UWN5 251 aa12.35□□□□□ -0.43
TTC28-205ENST00000469670 LCN15Q6UWW0 184 aa12.35□□□□□ -0.43
TTC28-205ENST00000469670 S100A7AQ86SG5 101 aa12.35□□□□□ -0.43
TTC28-205ENST00000469670 SLC50A1Q9BRV3 221 aa12.35□□□□□ -0.43
TTC28-205ENST00000469670 GSN-AS1Q9NRJ2 163 aa12.35□□□□□ -0.43
TTC28-205ENST00000469670 MSRB1Q9NZV6 116 aa12.35□□□□□ -0.43
TTC28-205ENST00000469670 FUT9Q9Y231 359 aa12.35□□□□□ -0.43
TTC28-205ENST00000469670 LY96Q9Y6Y9 160 aa12.35□□□□□ -0.43
TTC28-205ENST00000469670 IGLV5-52A0A0A0MRZ9 124 aa12.34□□□□□ -0.43
TTC28-205ENST00000469670 TRGV1A0A0A0MS02 117 aa12.34□□□□□ -0.43
TTC28-205ENST00000469670 H3BP45 60 aa12.34□□□□□ -0.43
TTC28-205ENST00000469670 SNRPCP09234 159 aaKnown RBP12.34□□□□□ -0.43
TTC28-205ENST00000469670 SLC25A6P12236 298 aa12.34□□□□□ -0.43
TTC28-205ENST00000469670 LINC00467Q9BRT7 94 aa12.34□□□□□ -0.43
TTC28-205ENST00000469670 NPIPB6E9PJ23 425 aa12.33□□□□□ -0.44
TTC28-205ENST00000469670 LEPP41159 167 aa12.33□□□□□ -0.44
TTC28-205ENST00000469670 SELENOTP62341 195 aa12.33□□□□□ -0.44
TTC28-205ENST00000469670 PATE2Q6UY27 113 aa12.33□□□□□ -0.44
TTC28-205ENST00000469670 C11orf72Q8NBR9 251 aa12.33□□□□□ -0.44
TTC28-205ENST00000469670 ZNF680Q8NEM1 530 aa12.33□□□□□ -0.44
TTC28-205ENST00000469670 ZNF431Q8TF32 576 aaPredicted RBP12.33□□□□□ -0.44
TTC28-205ENST00000469670 ARL6Q9H0F7 186 aa12.33□□□□□ -0.44
TTC28-205ENST00000469670 RNF24Q9Y225 148 aa12.33□□□□□ -0.44
TTC28-205ENST00000469670 STRAPQ9Y3F4 350 aaKnown RBP12.33□□□□□ -0.44
TTC28-205ENST00000469670 ANKRD20A5PA0PJZ0 165 aa12.32□□□□□ -0.44
TTC28-205ENST00000469670 RGS5O15539 181 aa12.32□□□□□ -0.44
TTC28-205ENST00000469670 CT45A10P0DMU9 189 aa12.32□□□□□ -0.44
TTC28-205ENST00000469670 SERTAD4-AS1Q5TG53 156 aa12.32□□□□□ -0.44
TTC28-205ENST00000469670 ODF3Q96PU9 254 aa12.32□□□□□ -0.44
TTC28-205ENST00000469670 ARV1Q9H2C2 271 aa12.32□□□□□ -0.44
TTC28-205ENST00000469670 MCUBQ9NWR8 336 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms