RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 SNCBQ16143 134 aa0.58□□□□□ -2.32
USP40-209ENST00000452724 SMIM20Q8N5G0 67 aa0.58□□□□□ -2.32
USP40-209ENST00000452724 Q8TAT8 98 aa0.58□□□□□ -2.32
USP40-209ENST00000452724 SS18L2Q9UHA2 77 aa0.58□□□□□ -2.32
USP40-209ENST00000452724 HSPB8Q9UJY1 196 aa0.58□□□□□ -2.32
USP40-209ENST00000452724 ASB4Q9Y574 426 aa0.58□□□□□ -2.32
USP40-209ENST00000452724 ECM29Q5VYK3 1845 aa0.58□□□□□ -2.32
USP40-209ENST00000452724 ARHGEF11O15085 1522 aa0.58□□□□□ -2.32
USP40-209ENST00000452724 ROCK1Q13464 1354 aa0.57□□□□□ -2.32
USP40-209ENST00000452724 SCN10AQ9Y5Y9 1956 aa0.57□□□□□ -2.32
USP40-209ENST00000452724 TAF1LQ8IZX4 1826 aa0.57□□□□□ -2.32
USP40-209ENST00000452724 CEP164Q9UPV0 1460 aa0.57□□□□□ -2.32
USP40-209ENST00000452724 A0A1W2PPM0 123 aa0.57□□□□□ -2.32
USP40-209ENST00000452724 hDV103S1A0JD37 113 aa0.57□□□□□ -2.32
USP40-209ENST00000452724 H3BQV1 296 aa0.57□□□□□ -2.32
USP40-209ENST00000452724 CSN2P05814 226 aa0.57□□□□□ -2.32
USP40-209ENST00000452724 CD2P06729 351 aa0.57□□□□□ -2.32
USP40-209ENST00000452724 HBBP68871 147 aa0.57□□□□□ -2.32
USP40-209ENST00000452724 RTL8BQ17RB0 113 aa0.57□□□□□ -2.32
USP40-209ENST00000452724 SPRNQ5BIV9 151 aa0.57□□□□□ -2.32
USP40-209ENST00000452724 FKBP1CQ5VVH2 108 aa0.57□□□□□ -2.32
USP40-209ENST00000452724 C3orf33Q6P1S2 294 aa0.57□□□□□ -2.32
USP40-209ENST00000452724 SBSPONQ8IVN8 264 aa0.57□□□□□ -2.32
USP40-209ENST00000452724 LRRC18Q8N456 261 aa0.57□□□□□ -2.32
USP40-209ENST00000452724 OR2H1Q9GZK4 316 aa0.57□□□□□ -2.32
USP40-209ENST00000452724 TMEM138Q9NPI0 162 aa0.57□□□□□ -2.32
USP40-209ENST00000452724 NUBP2Q9Y5Y2 271 aa0.57□□□□□ -2.32
USP40-209ENST00000452724 DENND4CQ5VZ89 1909 aa0.57□□□□□ -2.32
USP40-209ENST00000452724 YTHDC2Q9H6S0 1430 aaKnown RBP0.56□□□□□ -2.32
USP40-209ENST00000452724 SCN3AQ9NY46 2000 aa0.56□□□□□ -2.32
USP40-209ENST00000452724 KLF7O75840 302 aaPredicted RBP0.56□□□□□ -2.32
USP40-209ENST00000452724 CST7O76096 145 aa0.56□□□□□ -2.32
USP40-209ENST00000452724 IGHV3-33P01772 117 aa0.56□□□□□ -2.32
USP40-209ENST00000452724 IDO1P14902 403 aa0.56□□□□□ -2.32
USP40-209ENST00000452724 SERPINB1P30740 379 aa0.56□□□□□ -2.32
USP40-209ENST00000452724 RPL35P42766 123 aaKnown RBP0.56□□□□□ -2.32
USP40-209ENST00000452724 CRYBA4P53673 196 aa0.56□□□□□ -2.32
USP40-209ENST00000452724 LTC4SQ16873 150 aa0.56□□□□□ -2.32
USP40-209ENST00000452724 FAM24BQ8N5W8 94 aa0.56□□□□□ -2.32
USP40-209ENST00000452724 FAM216BQ8N7L0 139 aa0.56□□□□□ -2.32
USP40-209ENST00000452724 PSMF1Q92530 271 aa0.56□□□□□ -2.32
USP40-209ENST00000452724 ISOC1Q96CN7 298 aa0.56□□□□□ -2.32
USP40-209ENST00000452724 MCEEQ96PE7 176 aa0.56□□□□□ -2.32
USP40-209ENST00000452724 GGACTQ9BVM4 153 aa0.56□□□□□ -2.32
USP40-209ENST00000452724 TCEAL2Q9H3H9 227 aaPredicted RBP0.56□□□□□ -2.32
USP40-209ENST00000452724 GID8Q9NWU2 228 aa0.56□□□□□ -2.32
USP40-209ENST00000452724 KIF1BO60333 1816 aa0.56□□□□□ -2.32
USP40-209ENST00000452724 PLXND1Q9Y4D7 1925 aa0.56□□□□□ -2.32
USP40-209ENST00000452724 PFDN1O60925 122 aa0.55□□□□□ -2.32
USP40-209ENST00000452724 S100A5P33763 92 aa0.55□□□□□ -2.32
USP40-209ENST00000452724 GLRXP35754 106 aa0.55□□□□□ -2.32
USP40-209ENST00000452724 EFNA4P52798 201 aa0.55□□□□□ -2.32
USP40-209ENST00000452724 MRPS36P82909 103 aaKnown RBP0.55□□□□□ -2.32
USP40-209ENST00000452724 CIRBPQ14011 172 aaKnown RBP0.55□□□□□ -2.32
USP40-209ENST00000452724 MSMO1Q15800 293 aa0.55□□□□□ -2.32
USP40-209ENST00000452724 TRIQKQ629K1 86 aa0.55□□□□□ -2.32
USP40-209ENST00000452724 LINC00575Q6W349 94 aa0.55□□□□□ -2.32
USP40-209ENST00000452724 CROCCP2Q86T23 111 aa0.55□□□□□ -2.32
USP40-209ENST00000452724 PRR15Q8IV56 129 aa0.55□□□□□ -2.32
USP40-209ENST00000452724 NEK7Q8TDX7 302 aa0.55□□□□□ -2.32
USP40-209ENST00000452724 ZC2HC1AQ96GY0 325 aa0.55□□□□□ -2.32
USP40-209ENST00000452724 HOPXQ9BPY8 73 aaPredicted RBP0.55□□□□□ -2.32
USP40-209ENST00000452724 ATPIF1Q9UII2 106 aa0.55□□□□□ -2.32
USP40-209ENST00000452724 RNF11Q9Y3C5 154 aa0.55□□□□□ -2.32
USP40-209ENST00000452724 COL1A1P02452 1464 aaPredicted RBP0.54□□□□□ -2.32
USP40-209ENST00000452724 NCAPD3P42695 1498 aa0.54□□□□□ -2.32
USP40-209ENST00000452724 CECR2Q9BXF3 1484 aa0.54□□□□□ -2.32
USP40-209ENST00000452724 MAP1LC3B2A6NCE7 125 aa0.54□□□□□ -2.32
USP40-209ENST00000452724 KPNA4O00629 521 aaPredicted RBP0.54□□□□□ -2.32
USP40-209ENST00000452724 SNRNP200O75643 2136 aaKnown RBP0.54□□□□□ -2.32
USP40-209ENST00000452724 IGLV3-1P01715 115 aa0.54□□□□□ -2.32
USP40-209ENST00000452724 GNG10P50151 68 aa0.54□□□□□ -2.32
USP40-209ENST00000452724 SPATA45Q537H7 98 aa0.54□□□□□ -2.32
USP40-209ENST00000452724 DCUN1D2Q6PH85 259 aa0.54□□□□□ -2.32
USP40-209ENST00000452724 TMEM14EPQ6UXP3 125 aa0.54□□□□□ -2.32
USP40-209ENST00000452724 MED11Q9P086 117 aa0.54□□□□□ -2.32
USP40-209ENST00000452724 RTL9Q8NET4 1388 aa0.54□□□□□ -2.32
USP40-209ENST00000452724 CNTRLQ7Z7A1 2325 aa0.54□□□□□ -2.32
USP40-209ENST00000452724 OBSL1O75147 1896 aa0.54□□□□□ -2.32
USP40-209ENST00000452724 CAMSAP2Q08AD1 1489 aa0.54□□□□□ -2.32
USP40-209ENST00000452724 MCM3APO60318 1980 aa0.54□□□□□ -2.32
USP40-209ENST00000452724 NISCHQ9Y2I1 1504 aa0.54□□□□□ -2.32
USP40-209ENST00000452724 MED12Q93074 2177 aa0.53□□□□□ -2.32
USP40-209ENST00000452724 ODAMA1E959 279 aa0.53□□□□□ -2.32
USP40-209ENST00000452724 JMJD7-PLA2G4BH0Y9G9 81 aa0.53□□□□□ -2.32
USP40-209ENST00000452724 K7ERJ3 54 aa0.53□□□□□ -2.32
USP40-209ENST00000452724 EIF3IQ13347 325 aaKnown RBP0.53□□□□□ -2.32
USP40-209ENST00000452724 TMEM78Q5T7P6 136 aa0.53□□□□□ -2.32
USP40-209ENST00000452724 PPP1R2P3Q6NXS1 205 aa0.53□□□□□ -2.32
USP40-209ENST00000452724 OR10AC1Q8NH08 325 aa0.53□□□□□ -2.32
USP40-209ENST00000452724 CARD19Q96LW7 228 aa0.53□□□□□ -2.32
USP40-209ENST00000452724 PCBD2Q9H0N5 130 aa0.53□□□□□ -2.32
USP40-209ENST00000452724 CENPHQ9H3R5 247 aa0.53□□□□□ -2.32
USP40-209ENST00000452724 LRTM1Q9HBL6 345 aa0.53□□□□□ -2.32
USP40-209ENST00000452724 OTORQ9NRC9 128 aa0.53□□□□□ -2.32
USP40-209ENST00000452724 NAT8BQ9UHF3 227 aa0.53□□□□□ -2.32
USP40-209ENST00000452724 LAMTOR2Q9Y2Q5 125 aa0.53□□□□□ -2.32
USP40-209ENST00000452724 KIAA1549Q9HCM3 1950 aa0.53□□□□□ -2.32
USP40-209ENST00000452724 CD109Q6YHK3 1445 aa0.53□□□□□ -2.32
USP40-209ENST00000452724 MUC5BQ9HC84 5762 aaPredicted RBP0.52□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms