RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 KLF17Q5JT82 389 aaPredicted RBP15.32■□□□□ 0.04
HMGA1-205ENST00000447654 OSR1Q8TAX0 266 aaPredicted RBP15.32■□□□□ 0.04
HMGA1-205ENST00000447654 HHLA3Q9XRX5 114 aa15.32■□□□□ 0.04
HMGA1-205ENST00000447654 MAP1BP46821 2468 aaKnown RBP15.32■□□□□ 0.04
HMGA1-205ENST00000447654 CACNA1GO43497 2377 aa15.32■□□□□ 0.04
HMGA1-205ENST00000447654 B5MCH6 92 aa15.31■□□□□ 0.04
HMGA1-205ENST00000447654 RPL32P62910 135 aaKnown RBP15.31■□□□□ 0.04
HMGA1-205ENST00000447654 UFC1Q9Y3C8 167 aa15.31■□□□□ 0.04
HMGA1-205ENST00000447654 NBL1P41271 181 aa15.31■□□□□ 0.04
HMGA1-205ENST00000447654 PATE2Q6UY27 113 aa15.31■□□□□ 0.04
HMGA1-205ENST00000447654 ZNF562Q6V9R5 426 aa15.31■□□□□ 0.04
HMGA1-205ENST00000447654 RFESDQ8TAC1 157 aa15.31■□□□□ 0.04
HMGA1-205ENST00000447654 INS-IGF2F8WCM5 200 aa15.3■□□□□ 0.04
HMGA1-205ENST00000447654 FAM106CPP0CH98 169 aa15.3■□□□□ 0.04
HMGA1-205ENST00000447654 TCTAP57738 103 aa15.3■□□□□ 0.04
HMGA1-205ENST00000447654 LOXL1Q08397 574 aaPredicted RBP15.3■□□□□ 0.04
HMGA1-205ENST00000447654 FAM106AQ4KMX7 169 aa15.3■□□□□ 0.04
HMGA1-205ENST00000447654 RPL39P5Q59GN2 51 aa15.3■□□□□ 0.04
HMGA1-205ENST00000447654 Q86TA4 180 aa15.3■□□□□ 0.04
HMGA1-205ENST00000447654 ORMDL3Q8N138 153 aa15.3■□□□□ 0.04
HMGA1-205ENST00000447654 ANKRD11Q6UB99 2663 aaPredicted RBP15.29■□□□□ 0.04
HMGA1-205ENST00000447654 UPK2O00526 184 aa15.29■□□□□ 0.04
HMGA1-205ENST00000447654 CLEC3BP05452 202 aa15.29■□□□□ 0.04
HMGA1-205ENST00000447654 ARMS2P0C7Q2 107 aa15.29■□□□□ 0.04
HMGA1-205ENST00000447654 SRD5A1P18405 259 aa15.29■□□□□ 0.04
HMGA1-205ENST00000447654 HINT2Q9BX68 163 aa15.29■□□□□ 0.04
HMGA1-205ENST00000447654 FAM234AQ9H0X4 552 aa15.29■□□□□ 0.04
HMGA1-205ENST00000447654 WI2-2373I1.2A0A1W2PRP0 233 aa15.29■□□□□ 0.04
HMGA1-205ENST00000447654 IGHV1-2P23083 117 aa15.29■□□□□ 0.04
HMGA1-205ENST00000447654 AMTNQ6UX39 209 aa15.29■□□□□ 0.04
HMGA1-205ENST00000447654 THAP8Q8NA92 274 aa15.29■□□□□ 0.04
HMGA1-205ENST00000447654 TMEM158Q8WZ71 300 aa15.29■□□□□ 0.04
HMGA1-205ENST00000447654 DLX4Q92988 240 aaPredicted RBP15.29■□□□□ 0.04
HMGA1-205ENST00000447654 DKK2Q9UBU2 259 aa15.29■□□□□ 0.04
HMGA1-205ENST00000447654 IGKV2D-26A0A0A0MRZ7 120 aa15.28■□□□□ 0.04
HMGA1-205ENST00000447654 LINC01546A6NGU7 62 aa15.28■□□□□ 0.04
HMGA1-205ENST00000447654 MOGAT3Q86VF5 341 aa15.28■□□□□ 0.04
HMGA1-205ENST00000447654 OR10X1Q8NGY0 326 aa15.28■□□□□ 0.04
HMGA1-205ENST00000447654 RP1L1Q8IWN7 2480 aaPredicted RBP15.28■□□□□ 0.04
HMGA1-205ENST00000447654 GAGE12JA6NER3 117 aa15.28■□□□□ 0.04
HMGA1-205ENST00000447654 LYZL6O75951 148 aa15.28■□□□□ 0.04
HMGA1-205ENST00000447654 GAGE7O76087 117 aa15.28■□□□□ 0.04
HMGA1-205ENST00000447654 IGHG3P01860 377 aa15.28■□□□□ 0.04
HMGA1-205ENST00000447654 GAGE12FP0CL80 117 aa15.28■□□□□ 0.04
HMGA1-205ENST00000447654 GAGE12GP0CL81 117 aa15.28■□□□□ 0.04
HMGA1-205ENST00000447654 GAGE12IP0CL82 117 aa15.28■□□□□ 0.04
HMGA1-205ENST00000447654 GAGE4Q13068 117 aa15.28■□□□□ 0.04
HMGA1-205ENST00000447654 INTS1Q8N201 2190 aaKnown RBP15.27■□□□□ 0.04
HMGA1-205ENST00000447654 IQCF6A8MYZ5 107 aa15.27■□□□□ 0.04
HMGA1-205ENST00000447654 C16orf97H3BN30 126 aa15.27■□□□□ 0.04
HMGA1-205ENST00000447654 IGKCP01834 107 aa15.27■□□□□ 0.04
HMGA1-205ENST00000447654 ODF1Q14990 250 aa15.27■□□□□ 0.04
HMGA1-205ENST00000447654 IGFL2Q6UWQ7 119 aa15.27■□□□□ 0.04
HMGA1-205ENST00000447654 HARBI1Q96MB7 349 aa15.27■□□□□ 0.04
HMGA1-205ENST00000447654 CITED1Q99966 193 aa15.27■□□□□ 0.04
HMGA1-205ENST00000447654 DEFB109BQ30KR1 87 aa15.26■□□□□ 0.03
HMGA1-205ENST00000447654 ALKBH6Q3KRA9 238 aa15.26■□□□□ 0.03
HMGA1-205ENST00000447654 FAM104BQ5XKR9 115 aa15.26■□□□□ 0.03
HMGA1-205ENST00000447654 ASCL5Q7RTU5 278 aa15.26■□□□□ 0.03
HMGA1-205ENST00000447654 LINC00305Q7Z4B0 112 aa15.26■□□□□ 0.03
HMGA1-205ENST00000447654 RAB9BQ9NP90 201 aa15.26■□□□□ 0.03
HMGA1-205ENST00000447654 D6R8Y8 96 aa15.26■□□□□ 0.03
HMGA1-205ENST00000447654 GRPP07492 148 aa15.26■□□□□ 0.03
HMGA1-205ENST00000447654 HOXB4P17483 251 aaPredicted RBP15.26■□□□□ 0.03
HMGA1-205ENST00000447654 ARL3P36405 182 aa15.26■□□□□ 0.03
HMGA1-205ENST00000447654 FHL3Q13643 280 aa15.26■□□□□ 0.03
HMGA1-205ENST00000447654 LYRM7Q5U5X0 104 aa15.26■□□□□ 0.03
HMGA1-205ENST00000447654 NFE4Q86UQ8 179 aa15.26■□□□□ 0.03
HMGA1-205ENST00000447654 IGHV3-64DA0A0J9YX35 117 aa15.25■□□□□ 0.03
HMGA1-205ENST00000447654 ATP5LO75964 103 aa15.25■□□□□ 0.03
HMGA1-205ENST00000447654 LOXL3P58215 753 aa15.25■□□□□ 0.03
HMGA1-205ENST00000447654 TEN1Q86WV5 123 aa15.25■□□□□ 0.03
HMGA1-205ENST00000447654 TMEM8BA6NDV4 472 aa15.25■□□□□ 0.03
HMGA1-205ENST00000447654 PRSS29PA6NIE9 313 aa15.25■□□□□ 0.03
HMGA1-205ENST00000447654 RHODO00212 210 aa15.25■□□□□ 0.03
HMGA1-205ENST00000447654 PRRG2O14669 202 aa15.25■□□□□ 0.03
HMGA1-205ENST00000447654 NHLRC4P0CG21 123 aaPredicted RBP15.25■□□□□ 0.03
HMGA1-205ENST00000447654 SMCPP49901 116 aaPredicted RBP15.25■□□□□ 0.03
HMGA1-205ENST00000447654 SGK494Q96LW2 274 aa15.25■□□□□ 0.03
HMGA1-205ENST00000447654 OTORQ9NRC9 128 aa15.25■□□□□ 0.03
HMGA1-205ENST00000447654 ERHP84090 104 aaKnown RBP15.24■□□□□ 0.03
HMGA1-205ENST00000447654 TWIST1Q15672 202 aa15.24■□□□□ 0.03
HMGA1-205ENST00000447654 TBC1D28Q2M2D7 210 aa15.24■□□□□ 0.03
HMGA1-205ENST00000447654 C9orf106Q8NAJ2 232 aa15.24■□□□□ 0.03
HMGA1-205ENST00000447654 SRSF12Q8WXF0 261 aaKnown RBP15.24■□□□□ 0.03
HMGA1-205ENST00000447654 PTPRZ1P23471 2315 aaPredicted RBP15.24■□□□□ 0.03
HMGA1-205ENST00000447654 LOC389332A0A1B0GUA5 103 aa15.24■□□□□ 0.03
HMGA1-205ENST00000447654 TM4SF5O14894 197 aa15.24■□□□□ 0.03
HMGA1-205ENST00000447654 DPM2O94777 84 aa15.24■□□□□ 0.03
HMGA1-205ENST00000447654 CFHR2P36980 270 aa15.24■□□□□ 0.03
HMGA1-205ENST00000447654 RBMXL3Q8N7X1 1067 aaKnown RBP15.24■□□□□ 0.03
HMGA1-205ENST00000447654 Q9H3A6 140 aa15.24■□□□□ 0.03
HMGA1-205ENST00000447654 ZNF688P0C7X2 276 aa15.23■□□□□ 0.03
HMGA1-205ENST00000447654 SUB1P53999 127 aaKnown RBP eCLIP15.23■□□□□ 0.035e-8■□□□□ 8.7
HMGA1-205ENST00000447654 HOXA4Q00056 320 aaPredicted RBP15.23■□□□□ 0.03
HMGA1-205ENST00000447654 MLANAQ16655 118 aa15.23■□□□□ 0.03
HMGA1-205ENST00000447654 Q6Q795 121 aa15.23■□□□□ 0.03
HMGA1-205ENST00000447654 C11orf53Q8IXP5 236 aa15.23■□□□□ 0.03
HMGA1-205ENST00000447654 SMIM20Q8N5G0 67 aa15.23■□□□□ 0.03
HMGA1-205ENST00000447654 CNEP1R1Q8N9A8 125 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms