RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 SIAH2O43255 324 aa10.75□□□□□ -0.69
COL6A3-207ENST00000433762 GNG7O60262 68 aa10.75□□□□□ -0.69
COL6A3-207ENST00000433762 IL4P05112 153 aa10.75□□□□□ -0.69
COL6A3-207ENST00000433762 LYNX1P0DP58 116 aa10.75□□□□□ -0.69
COL6A3-207ENST00000433762 MAP1LC3CQ9BXW4 147 aa10.75□□□□□ -0.69
COL6A3-207ENST00000433762 NCOR2Q9Y618 2525 aa10.75□□□□□ -0.69
COL6A3-207ENST00000433762 PTPRQQ9UMZ3 2332 aa10.75□□□□□ -0.69
COL6A3-207ENST00000433762 CT45A10P0DMU9 189 aa10.75□□□□□ -0.69
COL6A3-207ENST00000433762 SRSF2Q01130 221 aaKnown RBP10.75□□□□□ -0.69
COL6A3-207ENST00000433762 BATFQ16520 125 aa10.75□□□□□ -0.69
COL6A3-207ENST00000433762 Q8N6K4 173 aa10.75□□□□□ -0.69
COL6A3-207ENST00000433762 LINC01560Q8TB33 94 aa10.75□□□□□ -0.69
COL6A3-207ENST00000433762 CFAP47Q6ZTR5 3102 aa10.75□□□□□ -0.69
COL6A3-207ENST00000433762 DMXL2Q8TDJ6 3036 aa10.75□□□□□ -0.69
COL6A3-207ENST00000433762 ANKRD11Q6UB99 2663 aaPredicted RBP10.74□□□□□ -0.69
COL6A3-207ENST00000433762 RPL7P18124 248 aaKnown RBP10.74□□□□□ -0.69
COL6A3-207ENST00000433762 CSN1S1P47710 185 aa10.74□□□□□ -0.69
COL6A3-207ENST00000433762 SAPCD1Q5SSQ6 148 aa10.74□□□□□ -0.69
COL6A3-207ENST00000433762 LHFPL4Q7Z7J7 247 aa10.74□□□□□ -0.69
COL6A3-207ENST00000433762 FANCD2OSQ96PS1 177 aa10.74□□□□□ -0.69
COL6A3-207ENST00000433762 LOC105371242A0A075B767 164 aa10.74□□□□□ -0.69
COL6A3-207ENST00000433762 DLX1P56177 255 aa10.74□□□□□ -0.69
COL6A3-207ENST00000433762 RPS20P60866 119 aaKnown RBP10.74□□□□□ -0.69
COL6A3-207ENST00000433762 C11orf71Q6IPW1 123 aa10.74□□□□□ -0.69
COL6A3-207ENST00000433762 STPG4Q8N801 248 aa10.74□□□□□ -0.69
COL6A3-207ENST00000433762 ARPC1AQ92747 370 aa10.74□□□□□ -0.69
COL6A3-207ENST00000433762 CLEC5AQ9NY25 188 aa10.73□□□□□ -0.69
COL6A3-207ENST00000433762 U3KQK5 164 aa10.73□□□□□ -0.69
COL6A3-207ENST00000433762 MGAQ8IWI9 3026 aa10.73□□□□□ -0.69
COL6A3-207ENST00000433762 HSBP1L1C9JCN9 74 aa10.73□□□□□ -0.69
COL6A3-207ENST00000433762 DPF1Q92782 380 aa10.73□□□□□ -0.69
COL6A3-207ENST00000433762 CACNA1AO00555 2505 aa10.72□□□□□ -0.69
COL6A3-207ENST00000433762 ARMS2P0C7Q2 107 aa10.72□□□□□ -0.69
COL6A3-207ENST00000433762 LINC01545Q5VT33 79 aa10.72□□□□□ -0.69
COL6A3-207ENST00000433762 ATOH7Q8N100 152 aa10.72□□□□□ -0.69
COL6A3-207ENST00000433762 AP5S1Q9NUS5 200 aa10.72□□□□□ -0.69
COL6A3-207ENST00000433762 C21orf62Q9NYP8 219 aa10.72□□□□□ -0.69
COL6A3-207ENST00000433762 FAM90A27PA6NNH2 459 aa10.72□□□□□ -0.69
COL6A3-207ENST00000433762 F8W735 103 aaPredicted RBP10.72□□□□□ -0.69
COL6A3-207ENST00000433762 NPSP0C0P6 89 aa10.72□□□□□ -0.69
COL6A3-207ENST00000433762 RAB9AP51151 201 aa10.72□□□□□ -0.69
COL6A3-207ENST00000433762 C17orf77Q96MU5 243 aa10.72□□□□□ -0.69
COL6A3-207ENST00000433762 NPFFR1Q9GZQ6 430 aa10.72□□□□□ -0.69
COL6A3-207ENST00000433762 NDUFB8O95169 186 aa10.71□□□□□ -0.69
COL6A3-207ENST00000433762 CRIP1P50238 77 aa10.71□□□□□ -0.69
COL6A3-207ENST00000433762 ARF6P62330 175 aa10.71□□□□□ -0.69
COL6A3-207ENST00000433762 MAJINQ3KP22 176 aa10.71□□□□□ -0.69
COL6A3-207ENST00000433762 PMCHL2Q9BQD1 86 aa10.71□□□□□ -0.69
COL6A3-207ENST00000433762 OR10AG1Q8NH19 301 aa10.7□□□□□ -0.7
COL6A3-207ENST00000433762 HILPDAQ9Y5L2 63 aa10.7□□□□□ -0.7
COL6A3-207ENST00000433762 SLC25A34Q6PIV7 304 aa10.7□□□□□ -0.7
COL6A3-207ENST00000433762 DTX2Q86UW9 622 aa10.7□□□□□ -0.7
COL6A3-207ENST00000433762 MAP1BP46821 2468 aaKnown RBP10.69□□□□□ -0.7
COL6A3-207ENST00000433762 CCL21O00585 134 aa10.69□□□□□ -0.7
COL6A3-207ENST00000433762 BMI1P35226 326 aa10.69□□□□□ -0.7
COL6A3-207ENST00000433762 PRB3Q04118 309 aaPredicted RBP10.69□□□□□ -0.7
COL6A3-207ENST00000433762 FA2HQ7L5A8 372 aa10.69□□□□□ -0.7
COL6A3-207ENST00000433762 VMO1Q7Z5L0 202 aa10.69□□□□□ -0.7
COL6A3-207ENST00000433762 ZNF738Q8NE65 137 aa10.69□□□□□ -0.7
COL6A3-207ENST00000433762 TMUB1Q9BVT8 246 aa10.69□□□□□ -0.7
COL6A3-207ENST00000433762 COX11Q9Y6N1 276 aa10.69□□□□□ -0.7
COL6A3-207ENST00000433762 TMEM189A5PLL7 270 aa10.69□□□□□ -0.7
COL6A3-207ENST00000433762 TFPI2P48307 235 aa10.69□□□□□ -0.7
COL6A3-207ENST00000433762 LAMA5O15230 3695 aa10.69□□□□□ -0.7
COL6A3-207ENST00000433762 CHD8Q9HCK8 2581 aa10.69□□□□□ -0.7
COL6A3-207ENST00000433762 A0A087X0K7 114 aa10.68□□□□□ -0.7
COL6A3-207ENST00000433762 M0QZ24 198 aa10.68□□□□□ -0.7
COL6A3-207ENST00000433762 KLRB1Q12918 225 aa10.68□□□□□ -0.7
COL6A3-207ENST00000433762 HES1Q14469 280 aa10.68□□□□□ -0.7
COL6A3-207ENST00000433762 FAM104BQ5XKR9 115 aa10.68□□□□□ -0.7
COL6A3-207ENST00000433762 ZNF747Q9BV97 191 aa10.68□□□□□ -0.7
COL6A3-207ENST00000433762 SCRT2Q9NQ03 307 aa10.68□□□□□ -0.7
COL6A3-207ENST00000433762 RABAC1Q9UI14 185 aa10.68□□□□□ -0.7
COL6A3-207ENST00000433762 C12orf54Q6X4T0 127 aa10.68□□□□□ -0.7
COL6A3-207ENST00000433762 PRR25Q96S07 402 aa10.68□□□□□ -0.7
COL6A3-207ENST00000433762 RBAKDNA6NC62 111 aa10.67□□□□□ -0.7
COL6A3-207ENST00000433762 M0R3E3 92 aa10.67□□□□□ -0.7
COL6A3-207ENST00000433762 SH2D1AO60880 128 aa10.67□□□□□ -0.7
COL6A3-207ENST00000433762 GRNP28799 593 aaKnown RBP10.67□□□□□ -0.7
COL6A3-207ENST00000433762 HINT1P49773 126 aaPredicted RBP10.67□□□□□ -0.7
COL6A3-207ENST00000433762 LINC00173Q6ZV60 143 aa10.67□□□□□ -0.7
COL6A3-207ENST00000433762 CNFNQ9BYD5 112 aa10.67□□□□□ -0.7
COL6A3-207ENST00000433762 BOD1L1Q8NFC6 3051 aa10.67□□□□□ -0.7
COL6A3-207ENST00000433762 TOX4O94842 621 aa10.67□□□□□ -0.7
COL6A3-207ENST00000433762 CD24P25063 80 aa10.67□□□□□ -0.7
COL6A3-207ENST00000433762 ADORA2A-AS1P86434 159 aa10.67□□□□□ -0.7
COL6A3-207ENST00000433762 KLRD1Q13241 179 aa10.67□□□□□ -0.7
COL6A3-207ENST00000433762 ORMDL3Q8N138 153 aa10.67□□□□□ -0.7
COL6A3-207ENST00000433762 PRSS3P2Q8NHM4 247 aa10.67□□□□□ -0.7
COL6A3-207ENST00000433762 FAM110DQ8TAY7 271 aaPredicted RBP10.67□□□□□ -0.7
COL6A3-207ENST00000433762 ANKHD1Q8IWZ3 2542 aaKnown RBP10.67□□□□□ -0.7
COL6A3-207ENST00000433762 TMEM8BA6NDV4 472 aa10.66□□□□□ -0.7
COL6A3-207ENST00000433762 CTSGP08311 255 aa10.66□□□□□ -0.7
COL6A3-207ENST00000433762 NDPQ00604 133 aa10.66□□□□□ -0.7
COL6A3-207ENST00000433762 PSMG4Q5JS54 123 aa10.66□□□□□ -0.7
COL6A3-207ENST00000433762 C8orf49Q96NF6 230 aa10.66□□□□□ -0.7
COL6A3-207ENST00000433762 ATP6V0BQ99437 205 aa10.66□□□□□ -0.7
COL6A3-207ENST00000433762 ABCA1O95477 2261 aa10.66□□□□□ -0.7
COL6A3-207ENST00000433762 BSNQ9UPA5 3926 aa10.66□□□□□ -0.7
COL6A3-207ENST00000433762 IGLC6P0CF74 106 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms