RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 OR4F17Q8NGA8 305 aa11.75□□□□□ -0.53
TPM3-208ENST00000341485 GTSF1Q8WW33 167 aa11.75□□□□□ -0.53
TPM3-208ENST00000341485 IGHV1-69DA0A0B4J2H0 117 aa11.75□□□□□ -0.53
TPM3-208ENST00000341485 A8MWL6 223 aa11.75□□□□□ -0.53
TPM3-208ENST00000341485 F8W735 103 aaPredicted RBP11.75□□□□□ -0.53
TPM3-208ENST00000341485 GNG7O60262 68 aa11.75□□□□□ -0.53
TPM3-208ENST00000341485 ZNF324O75467 553 aaPredicted RBP11.75□□□□□ -0.53
TPM3-208ENST00000341485 OR2J3O76001 311 aa11.75□□□□□ -0.53
TPM3-208ENST00000341485 IGHV1-69P01742 117 aa11.75□□□□□ -0.53
TPM3-208ENST00000341485 HLA-DRB1P01911 266 aa11.75□□□□□ -0.53
TPM3-208ENST00000341485 TMEM11P17152 192 aa11.75□□□□□ -0.53
TPM3-208ENST00000341485 TDRG1Q3Y452 100 aa11.75□□□□□ -0.53
TPM3-208ENST00000341485 SIGLEC15Q6ZMC9 328 aa11.75□□□□□ -0.53
TPM3-208ENST00000341485 PRNTQ86SH4 94 aa11.75□□□□□ -0.53
TPM3-208ENST00000341485 NRN1Q9NPD7 142 aa11.75□□□□□ -0.53
TPM3-208ENST00000341485 UTP20O75691 2785 aaKnown RBP11.74□□□□□ -0.53
TPM3-208ENST00000341485 RNF223E7ERA6 249 aa11.74□□□□□ -0.53
TPM3-208ENST00000341485 FAM106CPP0CH98 169 aa11.74□□□□□ -0.53
TPM3-208ENST00000341485 FCGR2BP31994 310 aaPredicted RBP11.74□□□□□ -0.53
TPM3-208ENST00000341485 MFAP4P55083 255 aa11.74□□□□□ -0.53
TPM3-208ENST00000341485 PIP4P2Q8N4L2 257 aa11.74□□□□□ -0.53
TPM3-208ENST00000341485 Q8N976 141 aa11.74□□□□□ -0.53
TPM3-208ENST00000341485 VN1R17PQ8TDU5 208 aa11.74□□□□□ -0.53
TPM3-208ENST00000341485 ZMAT5Q9UDW3 170 aaKnown RBP11.74□□□□□ -0.53
TPM3-208ENST00000341485 TACC2O95359 2948 aa11.74□□□□□ -0.53
TPM3-208ENST00000341485 MED13LQ71F56 2210 aa11.74□□□□□ -0.53
TPM3-208ENST00000341485 TRAV30A0A087WSZ9 112 aa11.74□□□□□ -0.53
TPM3-208ENST00000341485 A0A096LNT2 108 aa11.74□□□□□ -0.53
TPM3-208ENST00000341485 TRBV6-1A0A0K0K1D8 114 aa11.74□□□□□ -0.53
TPM3-208ENST00000341485 NPIPB6E9PJ23 425 aa11.74□□□□□ -0.53
TPM3-208ENST00000341485 GATA3P23771 443 aa11.74□□□□□ -0.53
TPM3-208ENST00000341485 KRTDAPP60985 99 aa11.74□□□□□ -0.53
TPM3-208ENST00000341485 PRR31Q5SQ13 230 aa11.74□□□□□ -0.53
TPM3-208ENST00000341485 DAZAP1Q96EP5 407 aaKnown RBP11.74□□□□□ -0.53
TPM3-208ENST00000341485 PGLYRP4Q96LB8 373 aa11.74□□□□□ -0.53
TPM3-208ENST00000341485 ZNF48Q96MX3 618 aaPredicted RBP11.74□□□□□ -0.53
TPM3-208ENST00000341485 ALKBH7Q9BT30 221 aaPredicted RBP11.74□□□□□ -0.53
TPM3-208ENST00000341485 SPG11Q96JI7 2443 aa11.73□□□□□ -0.53
TPM3-208ENST00000341485 ZNF785A8K8V0 405 aa11.73□□□□□ -0.53
TPM3-208ENST00000341485 EGR2P11161 476 aaPredicted RBP11.73□□□□□ -0.53
TPM3-208ENST00000341485 HBBP68871 147 aa11.73□□□□□ -0.53
TPM3-208ENST00000341485 LOXL1Q08397 574 aaPredicted RBP11.73□□□□□ -0.53
TPM3-208ENST00000341485 KLF5Q13887 457 aaPredicted RBP11.73□□□□□ -0.53
TPM3-208ENST00000341485 NIT1Q86X76 327 aa11.73□□□□□ -0.53
TPM3-208ENST00000341485 MAPK1IP1LQ8NDC0 245 aa11.73□□□□□ -0.53
TPM3-208ENST00000341485 AJUBAQ96IF1 538 aa11.73□□□□□ -0.53
TPM3-208ENST00000341485 ZNF414Q96IQ9 312 aa11.73□□□□□ -0.53
TPM3-208ENST00000341485 RNF24Q9Y225 148 aa11.73□□□□□ -0.53
TPM3-208ENST00000341485 ABCA2Q9BZC7 2435 aa11.73□□□□□ -0.53
TPM3-208ENST00000341485 A0A1B0GV90 55 aa11.72□□□□□ -0.53
TPM3-208ENST00000341485 NDUFB8O95169 186 aa11.72□□□□□ -0.53
TPM3-208ENST00000341485 PRB4P10163 310 aaPredicted RBP11.72□□□□□ -0.53
TPM3-208ENST00000341485 Q56UQ5 140 aa11.72□□□□□ -0.53
TPM3-208ENST00000341485 C16orf54Q6UWD8 224 aa11.72□□□□□ -0.53
TPM3-208ENST00000341485 BRD3OSQ6XYD6 125 aa11.72□□□□□ -0.53
TPM3-208ENST00000341485 FAM19A2Q8N3H0 131 aa11.72□□□□□ -0.53
TPM3-208ENST00000341485 TMEM75Q8N9X5 138 aa11.72□□□□□ -0.53
TPM3-208ENST00000341485 GFRA4Q9GZZ7 299 aa11.72□□□□□ -0.53
TPM3-208ENST00000341485 CHD6Q8TD26 2715 aa11.72□□□□□ -0.53
TPM3-208ENST00000341485 IGHV7-81A0A0B4J1V7 117 aa11.72□□□□□ -0.53
TPM3-208ENST00000341485 IGHV3-23P01764 117 aa11.72□□□□□ -0.53
TPM3-208ENST00000341485 FAM120AOSQ5T036 256 aa11.72□□□□□ -0.53
TPM3-208ENST00000341485 LYPD1Q8N2G4 141 aa11.72□□□□□ -0.53
TPM3-208ENST00000341485 OR2D3Q8NGH3 330 aa11.72□□□□□ -0.53
TPM3-208ENST00000341485 TMEM190Q8WZ59 177 aa11.72□□□□□ -0.53
TPM3-208ENST00000341485 Q96MF0 132 aa11.72□□□□□ -0.53
TPM3-208ENST00000341485 C2orf88Q9BSF0 95 aa11.72□□□□□ -0.53
TPM3-208ENST00000341485 C21orf62Q9NYP8 219 aa11.72□□□□□ -0.53
TPM3-208ENST00000341485 EREGO14944 169 aa11.71□□□□□ -0.53
TPM3-208ENST00000341485 IGHV4-38-2P0DP08 117 aa11.71□□□□□ -0.53
TPM3-208ENST00000341485 RBPMS2Q6ZRY4 209 aaKnown RBP11.71□□□□□ -0.53
TPM3-208ENST00000341485 Q8N9W7 124 aa11.71□□□□□ -0.53
TPM3-208ENST00000341485 ASCL2Q99929 193 aa11.71□□□□□ -0.53
TPM3-208ENST00000341485 C1RLQ9NZP8 487 aa11.71□□□□□ -0.53
TPM3-208ENST00000341485 SOX21Q9Y651 276 aaPredicted RBP11.71□□□□□ -0.53
TPM3-208ENST00000341485 DOPEY2Q9Y3R5 2298 aa11.71□□□□□ -0.54
TPM3-208ENST00000341485 DIRC3C9JPN6 131 aa11.71□□□□□ -0.54
TPM3-208ENST00000341485 TGFAP01135 160 aa11.71□□□□□ -0.54
TPM3-208ENST00000341485 LINC00469Q8N7U9 141 aa11.71□□□□□ -0.54
TPM3-208ENST00000341485 OR4B1Q8NGF8 309 aa11.71□□□□□ -0.54
TPM3-208ENST00000341485 ZC2HC1AQ96GY0 325 aa11.71□□□□□ -0.54
TPM3-208ENST00000341485 C20orf144Q9BQM9 153 aa11.71□□□□□ -0.54
TPM3-208ENST00000341485 NTF3P20783 257 aa11.7□□□□□ -0.54
TPM3-208ENST00000341485 PRSS57Q6UWY2 283 aa11.7□□□□□ -0.54
TPM3-208ENST00000341485 PSG8Q9UQ74 426 aa11.7□□□□□ -0.54
TPM3-208ENST00000341485 PAM16Q9Y3D7 125 aa11.7□□□□□ -0.54
TPM3-208ENST00000341485 FAM231BA6NCW3 169 aa11.69□□□□□ -0.54
TPM3-208ENST00000341485 M0R3E3 92 aa11.69□□□□□ -0.54
TPM3-208ENST00000341485 C3orf79P0CE67 100 aa11.69□□□□□ -0.54
TPM3-208ENST00000341485 PSG3Q16557 428 aa11.69□□□□□ -0.54
TPM3-208ENST00000341485 LBHQ53QV2 105 aaPredicted RBP11.69□□□□□ -0.54
TPM3-208ENST00000341485 VAMP8Q9BV40 100 aa11.69□□□□□ -0.54
TPM3-208ENST00000341485 OR2T8A6NH00 312 aa11.69□□□□□ -0.54
TPM3-208ENST00000341485 THYN1Q9P016 225 aa11.69□□□□□ -0.54
TPM3-208ENST00000341485 ZFP30Q9Y2G7 519 aa11.69□□□□□ -0.54
TPM3-208ENST00000341485 CRYBG3Q68DQ2 2970 aa11.68□□□□□ -0.54
TPM3-208ENST00000341485 FBN2P35556 2912 aa11.68□□□□□ -0.54
TPM3-208ENST00000341485 USP9YO00507 2555 aaPredicted RBP11.68□□□□□ -0.54
TPM3-208ENST00000341485 J3QLI3 93 aa11.68□□□□□ -0.54
TPM3-208ENST00000341485 APOHP02749 345 aaPredicted RBP11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms