RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 C12orf54Q6X4T0 127 aa8.4□□□□□ -1.07
COL3A1-202ENST00000317840 SETD2Q9BYW2 2564 aaPredicted RBP8.4□□□□□ -1.07
COL3A1-202ENST00000317840 CGB1A6NKQ9 187 aa8.39□□□□□ -1.07
COL3A1-202ENST00000317840 OR2J3O76001 311 aa8.39□□□□□ -1.07
COL3A1-202ENST00000317840 ARMS2P0C7Q2 107 aa8.39□□□□□ -1.07
COL3A1-202ENST00000317840 UBE2V1Q13404 147 aa8.39□□□□□ -1.07
COL3A1-202ENST00000317840 ORAOV1Q8WV07 137 aa8.39□□□□□ -1.07
COL3A1-202ENST00000317840 CHCHD1Q96BP2 118 aaKnown RBP8.39□□□□□ -1.07
COL3A1-202ENST00000317840 PTPRBP23467 1997 aa8.39□□□□□ -1.07
COL3A1-202ENST00000317840 USP9XQ93008 2570 aaPredicted RBP8.39□□□□□ -1.07
COL3A1-202ENST00000317840 CENPEQ02224 2701 aa8.39□□□□□ -1.07
COL3A1-202ENST00000317840 IGF2-ASQ6U949 168 aa8.39□□□□□ -1.07
COL3A1-202ENST00000317840 Q86TA4 180 aa8.39□□□□□ -1.07
COL3A1-202ENST00000317840 LINC00574Q9H8X3 128 aa8.39□□□□□ -1.07
COL3A1-202ENST00000317840 F11RQ9Y624 299 aaKnown RBP8.39□□□□□ -1.07
COL3A1-202ENST00000317840 A0A087X0K7 114 aa8.39□□□□□ -1.07
COL3A1-202ENST00000317840 IGHV1-3A0A0C4DH29 117 aa8.39□□□□□ -1.07
COL3A1-202ENST00000317840 C2orf70A6NJV1 201 aa8.39□□□□□ -1.07
COL3A1-202ENST00000317840 IGLV2-23P01705 113 aa8.39□□□□□ -1.07
COL3A1-202ENST00000317840 THBDP07204 575 aa8.39□□□□□ -1.07
COL3A1-202ENST00000317840 TMEM11P17152 192 aa8.39□□□□□ -1.07
COL3A1-202ENST00000317840 FXYD7P58549 80 aa8.39□□□□□ -1.07
COL3A1-202ENST00000317840 TMEM155Q4W5P6 130 aa8.39□□□□□ -1.07
COL3A1-202ENST00000317840 ST20Q9HBF5 79 aa8.39□□□□□ -1.07
COL3A1-202ENST00000317840 NDUFB8O95169 186 aa8.38□□□□□ -1.07
COL3A1-202ENST00000317840 IGHV3-23P01764 117 aa8.38□□□□□ -1.07
COL3A1-202ENST00000317840 KLF5Q13887 457 aaPredicted RBP8.38□□□□□ -1.07
COL3A1-202ENST00000317840 S100A7AQ86SG5 101 aa8.38□□□□□ -1.07
COL3A1-202ENST00000317840 TMEM116Q8NCL8 245 aa8.38□□□□□ -1.07
COL3A1-202ENST00000317840 OR10AG1Q8NH19 301 aa8.38□□□□□ -1.07
COL3A1-202ENST00000317840 C17orf77Q96MU5 243 aa8.38□□□□□ -1.07
COL3A1-202ENST00000317840 PSG8Q9UQ74 426 aa8.38□□□□□ -1.07
COL3A1-202ENST00000317840 DCHS1Q96JQ0 3298 aa8.38□□□□□ -1.07
COL3A1-202ENST00000317840 ZNF672Q499Z4 452 aaPredicted RBP8.38□□□□□ -1.07
COL3A1-202ENST00000317840 NAV2Q8IVL1 2488 aa8.38□□□□□ -1.07
COL3A1-202ENST00000317840 TMEM189A5PLL7 270 aa8.37□□□□□ -1.07
COL3A1-202ENST00000317840 NDUFS7O75251 213 aa8.37□□□□□ -1.07
COL3A1-202ENST00000317840 LTAP01374 205 aa8.37□□□□□ -1.07
COL3A1-202ENST00000317840 GP9P14770 177 aa8.37□□□□□ -1.07
COL3A1-202ENST00000317840 WFDC3Q8IUB2 231 aa8.37□□□□□ -1.07
COL3A1-202ENST00000317840 DSCAML1Q8TD84 2053 aa8.37□□□□□ -1.07
COL3A1-202ENST00000317840 TIMM23O14925 209 aa8.37□□□□□ -1.07
COL3A1-202ENST00000317840 C3orf36Q3SXR2 165 aa8.37□□□□□ -1.07
COL3A1-202ENST00000317840 RNF125Q96EQ8 232 aa8.37□□□□□ -1.07
COL3A1-202ENST00000317840 PPP1R14DQ9NXH3 145 aa8.37□□□□□ -1.07
COL3A1-202ENST00000317840 ORM1P02763 201 aa8.37□□□□□ -1.07
COL3A1-202ENST00000317840 IGLC1P0CG04 106 aa8.37□□□□□ -1.07
COL3A1-202ENST00000317840 LINC00311Q8N616 119 aa8.36□□□□□ -1.07
COL3A1-202ENST00000317840 A0A1B0GXF2 115 aa8.36□□□□□ -1.07
COL3A1-202ENST00000317840 BUB1B-PAK6H3BSN5 160 aa8.36□□□□□ -1.07
COL3A1-202ENST00000317840 TWIST1Q15672 202 aa8.36□□□□□ -1.07
COL3A1-202ENST00000317840 CT83Q5H943 113 aa8.36□□□□□ -1.07
COL3A1-202ENST00000317840 FAM71F2Q6NXP2 309 aa8.36□□□□□ -1.07
COL3A1-202ENST00000317840 KLF12Q9Y4X4 402 aa8.36□□□□□ -1.07
COL3A1-202ENST00000317840 MYO9AB2RTY4 2548 aa8.36□□□□□ -1.07
COL3A1-202ENST00000317840 CKS2P33552 79 aa8.36□□□□□ -1.07
COL3A1-202ENST00000317840 NMUP48645 174 aa8.36□□□□□ -1.07
COL3A1-202ENST00000317840 PET117Q6UWS5 81 aa8.36□□□□□ -1.07
COL3A1-202ENST00000317840 SPATA12Q7Z6I5 190 aa8.36□□□□□ -1.07
COL3A1-202ENST00000317840 RNASE8Q8TDE3 154 aaKnown RBP8.36□□□□□ -1.07
COL3A1-202ENST00000317840 SMIM12Q96EX1 92 aa8.36□□□□□ -1.07
COL3A1-202ENST00000317840 ZC2HC1AQ96GY0 325 aa8.36□□□□□ -1.07
COL3A1-202ENST00000317840 ZNF492Q9P255 531 aa8.36□□□□□ -1.07
COL3A1-202ENST00000317840 OR2T8A6NH00 312 aa8.35□□□□□ -1.07
COL3A1-202ENST00000317840 AMMECR1LQ6DCA0 310 aa8.35□□□□□ -1.07
COL3A1-202ENST00000317840 MLST8Q9BVC4 326 aa8.35□□□□□ -1.07
COL3A1-202ENST00000317840 INS-IGF2F8WCM5 200 aa8.35□□□□□ -1.07
COL3A1-202ENST00000317840 SCGB2A1O75556 95 aa8.35□□□□□ -1.07
COL3A1-202ENST00000317840 KLRD1Q13241 179 aa8.35□□□□□ -1.07
COL3A1-202ENST00000317840 LDLRAD2Q5SZI1 272 aa8.35□□□□□ -1.07
COL3A1-202ENST00000317840 PRELID3AQ96N28 172 aa8.35□□□□□ -1.07
COL3A1-202ENST00000317840 GPR183P32249 361 aa8.35□□□□□ -1.07
COL3A1-202ENST00000317840 RELQ04864 619 aaPredicted RBP8.35□□□□□ -1.07
COL3A1-202ENST00000317840 C18orf15Q96N68 181 aa8.35□□□□□ -1.07
COL3A1-202ENST00000317840 GFRA4Q9GZZ7 299 aa8.35□□□□□ -1.07
COL3A1-202ENST00000317840 ABCA2Q9BZC7 2435 aa8.35□□□□□ -1.07
COL3A1-202ENST00000317840 ZNF785A8K8V0 405 aa8.34□□□□□ -1.07
COL3A1-202ENST00000317840 D6R8Y8 96 aa8.34□□□□□ -1.07
COL3A1-202ENST00000317840 MYCNOSP40205 109 aa8.34□□□□□ -1.07
COL3A1-202ENST00000317840 IFI27P40305 119 aaPredicted RBP8.34□□□□□ -1.07
COL3A1-202ENST00000317840 IGFL4Q6B9Z1 124 aa8.34□□□□□ -1.07
COL3A1-202ENST00000317840 RAB37Q96AX2 223 aa8.34□□□□□ -1.07
COL3A1-202ENST00000317840 LOC105371242A0A075B767 164 aa8.34□□□□□ -1.07
COL3A1-202ENST00000317840 Q71RC1 249 aaPredicted RBP8.34□□□□□ -1.07
COL3A1-202ENST00000317840 AMN1Q8IY45 258 aa8.34□□□□□ -1.07
COL3A1-202ENST00000317840 NDFIP1Q9BT67 221 aa8.34□□□□□ -1.07
COL3A1-202ENST00000317840 PRSS22Q9GZN4 317 aa8.34□□□□□ -1.07
COL3A1-202ENST00000317840 ZNF462Q96JM2 2506 aa8.34□□□□□ -1.07
COL3A1-202ENST00000317840 IGHV3OR16-13A0A075B7E8 117 aa8.34□□□□□ -1.07
COL3A1-202ENST00000317840 IGHV3-74A0A0B4J1X5 117 aa8.34□□□□□ -1.07
COL3A1-202ENST00000317840 C19orf71A6NCJ1 209 aa8.34□□□□□ -1.07
COL3A1-202ENST00000317840 IGKV1-17P01599 117 aa8.34□□□□□ -1.07
COL3A1-202ENST00000317840 CEACAM3P40198 252 aa8.34□□□□□ -1.07
COL3A1-202ENST00000317840 NAA38Q9BRA0 125 aaKnown RBP8.34□□□□□ -1.07
COL3A1-202ENST00000317840 TRBV19A0A075B6N1 114 aa8.33□□□□□ -1.08
COL3A1-202ENST00000317840 IGKV2-40A0A087WW87 121 aaPredicted RBP8.33□□□□□ -1.08
COL3A1-202ENST00000317840 TMEM213A2RRL7 107 aa8.33□□□□□ -1.08
COL3A1-202ENST00000317840 FCN3O75636 299 aa8.33□□□□□ -1.08
COL3A1-202ENST00000317840 IGKV2D-40P01614 121 aaPredicted RBP8.33□□□□□ -1.08
COL3A1-202ENST00000317840 CRYGCP07315 174 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms