RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 KRTAP10-9P60411 292 aa8.96□□□□□ -0.97
CUX1-202ENST00000292538 OR2D3Q8NGH3 330 aa8.96□□□□□ -0.97
CUX1-202ENST00000292538 PGLYRP4Q96LB8 373 aa8.96□□□□□ -0.97
CUX1-202ENST00000292538 NOTCH2Q04721 2471 aa8.96□□□□□ -0.98
CUX1-202ENST00000292538 IGKV3-7A0A075B6H7 116 aa8.96□□□□□ -0.98
CUX1-202ENST00000292538 ZNF785A8K8V0 405 aa8.96□□□□□ -0.98
CUX1-202ENST00000292538 ZNF705FA8MVS1 300 aaPredicted RBP8.96□□□□□ -0.98
CUX1-202ENST00000292538 P01737 135 aa8.96□□□□□ -0.98
CUX1-202ENST00000292538 RPL19P84098 196 aaKnown RBP8.96□□□□□ -0.98
CUX1-202ENST00000292538 C5orf56Q8N8D9 126 aa8.96□□□□□ -0.98
CUX1-202ENST00000292538 NEU1Q99519 415 aa8.96□□□□□ -0.98
CUX1-202ENST00000292538 RABAC1Q9UI14 185 aa8.96□□□□□ -0.98
CUX1-202ENST00000292538 Q6ZS46 218 aa8.95□□□□□ -0.98
CUX1-202ENST00000292538 AAMDCQ9H7C9 122 aa8.95□□□□□ -0.98
CUX1-202ENST00000292538 OTORQ9NRC9 128 aa8.95□□□□□ -0.98
CUX1-202ENST00000292538 IGKV2-40A0A087WW87 121 aaPredicted RBP8.95□□□□□ -0.98
CUX1-202ENST00000292538 MUC21A0A0G2JKD1 596 aa8.95□□□□□ -0.98
CUX1-202ENST00000292538 MUC21A0A140T8X8 626 aa8.95□□□□□ -0.98
CUX1-202ENST00000292538 RNF223E7ERA6 249 aa8.95□□□□□ -0.98
CUX1-202ENST00000292538 IGKV2D-40P01614 121 aaPredicted RBP8.95□□□□□ -0.98
CUX1-202ENST00000292538 TRGV3P03979 118 aa8.95□□□□□ -0.98
CUX1-202ENST00000292538 MUC21Q5SSG8 566 aa8.95□□□□□ -0.98
CUX1-202ENST00000292538 NUP35Q8NFH5 326 aa8.95□□□□□ -0.98
CUX1-202ENST00000292538 SETD2Q9BYW2 2564 aaPredicted RBP8.95□□□□□ -0.98
CUX1-202ENST00000292538 YPEL3P61236 119 aaPredicted RBP8.94□□□□□ -0.98
CUX1-202ENST00000292538 HIST2H2BCQ6DN03 193 aa8.94□□□□□ -0.98
CUX1-202ENST00000292538 TOMM20LQ6UXN7 152 aa8.94□□□□□ -0.98
CUX1-202ENST00000292538 GSN-AS1Q9NRJ2 163 aa8.94□□□□□ -0.98
CUX1-202ENST00000292538 MOB4Q9Y3A3 225 aa8.94□□□□□ -0.98
CUX1-202ENST00000292538 MYO9AB2RTY4 2548 aa8.94□□□□□ -0.98
CUX1-202ENST00000292538 TRAV41A0A0B4J266 112 aa8.94□□□□□ -0.98
CUX1-202ENST00000292538 WI2-2373I1.2A0A1W2PRP0 233 aa8.94□□□□□ -0.98
CUX1-202ENST00000292538 SCGB2A1O75556 95 aa8.94□□□□□ -0.98
CUX1-202ENST00000292538 TPPP2P59282 170 aa8.94□□□□□ -0.98
CUX1-202ENST00000292538 SRSF1Q07955 248 aaKnown RBP eCLIP8.94□□□□□ -0.98
CUX1-202ENST00000292538 Q8TAT8 98 aa8.94□□□□□ -0.98
CUX1-202ENST00000292538 FAM110DQ8TAY7 271 aaPredicted RBP8.94□□□□□ -0.98
CUX1-202ENST00000292538 FMC1Q96HJ9 113 aa8.94□□□□□ -0.98
CUX1-202ENST00000292538 ZNF414Q96IQ9 312 aa8.94□□□□□ -0.98
CUX1-202ENST00000292538 PRO1933Q9H354 126 aa8.94□□□□□ -0.98
CUX1-202ENST00000292538 TEX15Q9BXT5 2789 aa8.94□□□□□ -0.98
CUX1-202ENST00000292538 B4DSR2 109 aa8.94□□□□□ -0.98
CUX1-202ENST00000292538 APOHP02749 345 aaPredicted RBP8.94□□□□□ -0.98
CUX1-202ENST00000292538 PF4V1P10720 104 aa8.94□□□□□ -0.98
CUX1-202ENST00000292538 SIGLEC15Q6ZMC9 328 aa8.94□□□□□ -0.98
CUX1-202ENST00000292538 RNF182Q8N6D2 247 aa8.94□□□□□ -0.98
CUX1-202ENST00000292538 PIFOQ8TCI5 191 aa8.94□□□□□ -0.98
CUX1-202ENST00000292538 PRRC2AP48634 2157 aaKnown RBP8.93□□□□□ -0.98
CUX1-202ENST00000292538 NBPF19A0A087WUL8 3843 aa8.93□□□□□ -0.98
CUX1-202ENST00000292538 NDUFS8O00217 210 aa8.93□□□□□ -0.98
CUX1-202ENST00000292538 BMPR1BO00238 502 aa8.93□□□□□ -0.98
CUX1-202ENST00000292538 IGLC2P0DOY2 106 aa8.93□□□□□ -0.98
CUX1-202ENST00000292538 SRIP30626 198 aa8.93□□□□□ -0.98
CUX1-202ENST00000292538 ATP5G2Q06055 141 aa8.93□□□□□ -0.98
CUX1-202ENST00000292538 C8orf49Q96NF6 230 aa8.93□□□□□ -0.98
CUX1-202ENST00000292538 DUX5Q96PT3 197 aa8.93□□□□□ -0.98
CUX1-202ENST00000292538 SAMD10Q9BYL1 202 aa8.93□□□□□ -0.98
CUX1-202ENST00000292538 SERF1AO75920 110 aa8.93□□□□□ -0.98
CUX1-202ENST00000292538 SCGB1D1O95968 90 aa8.93□□□□□ -0.98
CUX1-202ENST00000292538 CSN1S1P47710 185 aa8.93□□□□□ -0.98
CUX1-202ENST00000292538 RPL11P62913 178 aaKnown RBP8.93□□□□□ -0.98
CUX1-202ENST00000292538 OR5R1Q8NH85 324 aa8.93□□□□□ -0.98
CUX1-202ENST00000292538 GRAMD2BQ96HH9 432 aa8.93□□□□□ -0.98
CUX1-202ENST00000292538 CCDC140Q96MF4 163 aa8.93□□□□□ -0.98
CUX1-202ENST00000292538 TMEM14CQ9P0S9 112 aa8.93□□□□□ -0.98
CUX1-202ENST00000292538 SMIM27A0A1W2PRY6 76 aa8.92□□□□□ -0.98
CUX1-202ENST00000292538 K7EQM0 130 aa8.92□□□□□ -0.98
CUX1-202ENST00000292538 ZNF253O75346 499 aa8.92□□□□□ -0.98
CUX1-202ENST00000292538 GOSR1O95249 250 aa8.92□□□□□ -0.98
CUX1-202ENST00000292538 TRBV12-3P01733 135 aa8.92□□□□□ -0.98
CUX1-202ENST00000292538 APCSP02743 223 aa8.92□□□□□ -0.98
CUX1-202ENST00000292538 Q86TA4 180 aa8.92□□□□□ -0.98
CUX1-202ENST00000292538 GBGT1Q8N5D6 347 aa8.92□□□□□ -0.98
CUX1-202ENST00000292538 ZNF502Q8TBZ5 544 aa8.92□□□□□ -0.98
CUX1-202ENST00000292538 EEF1AKMT3Q96AZ1 226 aa8.92□□□□□ -0.98
CUX1-202ENST00000292538 TMEM18Q96B42 140 aa8.92□□□□□ -0.98
CUX1-202ENST00000292538 PSG8Q9UQ74 426 aa8.92□□□□□ -0.98
CUX1-202ENST00000292538 IZUMO1RA6ND01 250 aa8.92□□□□□ -0.98
CUX1-202ENST00000292538 LINC00587B1AMM8 73 aa8.92□□□□□ -0.98
CUX1-202ENST00000292538 VWC2LB2RUY7 222 aa8.92□□□□□ -0.98
CUX1-202ENST00000292538 LTAP01374 205 aa8.92□□□□□ -0.98
CUX1-202ENST00000292538 RPL7P18124 248 aaKnown RBP8.92□□□□□ -0.98
CUX1-202ENST00000292538 SLAQ13239 276 aa8.92□□□□□ -0.98
CUX1-202ENST00000292538 IQCJQ1A5X6 159 aa8.92□□□□□ -0.98
CUX1-202ENST00000292538 TMEM136Q6ZRR5 245 aa8.92□□□□□ -0.98
CUX1-202ENST00000292538 KLK15Q9H2R5 256 aa8.92□□□□□ -0.98
CUX1-202ENST00000292538 RPP21Q9H633 154 aaKnown RBP8.92□□□□□ -0.98
CUX1-202ENST00000292538 UBR5O95071 2799 aaPredicted RBP8.91□□□□□ -0.98
CUX1-202ENST00000292538 PMCHP20382 165 aa8.91□□□□□ -0.98
CUX1-202ENST00000292538 S100A12P80511 92 aa8.91□□□□□ -0.98
CUX1-202ENST00000292538 S100A7AQ86SG5 101 aa8.91□□□□□ -0.98
CUX1-202ENST00000292538 ZC2HC1AQ96GY0 325 aa8.91□□□□□ -0.98
CUX1-202ENST00000292538 TIMM8BQ9Y5J9 83 aaPredicted RBP8.91□□□□□ -0.98
CUX1-202ENST00000292538 MXRA5Q9NR99 2828 aa8.91□□□□□ -0.98
CUX1-202ENST00000292538 NTF3P20783 257 aa8.91□□□□□ -0.98
CUX1-202ENST00000292538 FOXA3P55318 350 aaPredicted RBP8.91□□□□□ -0.98
CUX1-202ENST00000292538 TSKUQ8WUA8 353 aa8.91□□□□□ -0.98
CUX1-202ENST00000292538 KLF12Q9Y4X4 402 aa8.91□□□□□ -0.98
CUX1-202ENST00000292538 DIRC3C9JPN6 131 aa8.91□□□□□ -0.98
CUX1-202ENST00000292538 IGLV2-11P01706 119 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms