RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 CCSO14618 274 aa3.15□□□□□ -1.91
VPS35-204ENST00000563884 MT-CO2P00403 227 aa3.15□□□□□ -1.91
VPS35-204ENST00000563884 NQO2P16083 231 aa3.15□□□□□ -1.91
VPS35-204ENST00000563884 TAS2R31P59538 309 aa3.15□□□□□ -1.91
VPS35-204ENST00000563884 ERVK-16P61578 105 aa3.15□□□□□ -1.91
VPS35-204ENST00000563884 GAMTQ14353 236 aa3.15□□□□□ -1.91
VPS35-204ENST00000563884 IBA57Q5T440 356 aaKnown RBP3.15□□□□□ -1.91
VPS35-204ENST00000563884 CFAP161Q6P656 301 aa3.15□□□□□ -1.91
VPS35-204ENST00000563884 SYS1Q8N2H4 156 aa3.15□□□□□ -1.91
VPS35-204ENST00000563884 OR10W1Q8NGF6 305 aa3.15□□□□□ -1.91
VPS35-204ENST00000563884 RNASE8Q8TDE3 154 aaKnown RBP3.15□□□□□ -1.91
VPS35-204ENST00000563884 RMI2Q96E14 147 aa3.15□□□□□ -1.91
VPS35-204ENST00000563884 TXNDC17Q9BRA2 123 aa3.15□□□□□ -1.91
VPS35-204ENST00000563884 DCSTAMPQ9H295 470 aa3.15□□□□□ -1.91
VPS35-204ENST00000563884 RBMX2Q9Y388 322 aaKnown RBP3.15□□□□□ -1.91
VPS35-204ENST00000563884 TRAV30A0A087WSZ9 112 aa3.14□□□□□ -1.91
VPS35-204ENST00000563884 TRAV8-1A0A0A6YYK1 113 aa3.14□□□□□ -1.91
VPS35-204ENST00000563884 IGKV1-6A0A0C4DH72 117 aa3.14□□□□□ -1.91
VPS35-204ENST00000563884 CORTO00230 105 aa3.14□□□□□ -1.91
VPS35-204ENST00000563884 UPK2O00526 184 aa3.14□□□□□ -1.91
VPS35-204ENST00000563884 ISLRO14498 428 aa3.14□□□□□ -1.91
VPS35-204ENST00000563884 LECT2O14960 151 aa3.14□□□□□ -1.91
VPS35-204ENST00000563884 RBFOX2O43251 390 aaKnown RBP eCLIP3.14□□□□□ -1.91
VPS35-204ENST00000563884 ZNF324O75467 553 aaPredicted RBP3.14□□□□□ -1.91
VPS35-204ENST00000563884 HSD17B1P14061 328 aa3.14□□□□□ -1.91
VPS35-204ENST00000563884 HTN1P15515 57 aa3.14□□□□□ -1.91
VPS35-204ENST00000563884 SPINK13Q1W4C9 94 aa3.14□□□□□ -1.91
VPS35-204ENST00000563884 SPINK6Q6UWN8 80 aa3.14□□□□□ -1.91
VPS35-204ENST00000563884 DHFR2Q86XF0 187 aa3.14□□□□□ -1.91
VPS35-204ENST00000563884 PINX1Q96BK5 328 aaKnown RBP3.14□□□□□ -1.91
VPS35-204ENST00000563884 CMSS1Q9BQ75 279 aaKnown RBP3.14□□□□□ -1.91
VPS35-204ENST00000563884 C20orf144Q9BQM9 153 aa3.14□□□□□ -1.91
VPS35-204ENST00000563884 SAR1AQ9NR31 198 aa3.14□□□□□ -1.91
VPS35-204ENST00000563884 FKBP11Q9NYL4 201 aa3.14□□□□□ -1.91
VPS35-204ENST00000563884 PRO0255Q9UI72 69 aa3.14□□□□□ -1.91
VPS35-204ENST00000563884 AK3Q9UIJ7 227 aa3.14□□□□□ -1.91
VPS35-204ENST00000563884 TRAV8-6A0A0B4J262 113 aa3.13□□□□□ -1.91
VPS35-204ENST00000563884 SNTNA6NMZ2 147 aa3.13□□□□□ -1.91
VPS35-204ENST00000563884 BOLA2-SMG1P6H3BVE0 249 aa3.13□□□□□ -1.91
VPS35-204ENST00000563884 H7BYZ3 331 aa3.13□□□□□ -1.91
VPS35-204ENST00000563884 K7EQD1 137 aa3.13□□□□□ -1.91
VPS35-204ENST00000563884 M0R2Z0 102 aa3.13□□□□□ -1.91
VPS35-204ENST00000563884 PITX3O75364 302 aa3.13□□□□□ -1.91
VPS35-204ENST00000563884 SNAPC5O75971 98 aa3.13□□□□□ -1.91
VPS35-204ENST00000563884 HPRT1P00492 218 aa3.13□□□□□ -1.91
VPS35-204ENST00000563884 CDK1P06493 297 aa3.13□□□□□ -1.91
VPS35-204ENST00000563884 KRTAP1-4P0C5Y4 121 aa3.13□□□□□ -1.91
VPS35-204ENST00000563884 COX4I1P13073 169 aa3.13□□□□□ -1.91
VPS35-204ENST00000563884 ELK1P19419 428 aa3.13□□□□□ -1.91
VPS35-204ENST00000563884 UCP1P25874 307 aa3.13□□□□□ -1.91
VPS35-204ENST00000563884 MEOX2P50222 304 aa3.13□□□□□ -1.91
VPS35-204ENST00000563884 ARPC4P59998 168 aa3.13□□□□□ -1.91
VPS35-204ENST00000563884 MAGOHP61326 146 aaKnown RBP3.13□□□□□ -1.91
VPS35-204ENST00000563884 CATR1Q13166 79 aa3.13□□□□□ -1.91
VPS35-204ENST00000563884 WFDC2Q14508 124 aa3.13□□□□□ -1.91
VPS35-204ENST00000563884 POU2AF1Q16633 256 aa3.13□□□□□ -1.91
VPS35-204ENST00000563884 TIGITQ495A1 244 aa3.13□□□□□ -1.91
VPS35-204ENST00000563884 BAP18Q8IXM2 172 aa3.13□□□□□ -1.91
VPS35-204ENST00000563884 ZNF664Q8N3J9 261 aa3.13□□□□□ -1.91
VPS35-204ENST00000563884 ACBD7Q8N6N7 88 aa3.13□□□□□ -1.91
VPS35-204ENST00000563884 OR11H7Q8NGC8 314 aa3.13□□□□□ -1.91
VPS35-204ENST00000563884 RNF185Q96GF1 192 aa3.13□□□□□ -1.91
VPS35-204ENST00000563884 NDUFA4L2Q9NRX3 87 aa3.13□□□□□ -1.91
VPS35-204ENST00000563884 PSORS1C2Q9UIG4 136 aa3.13□□□□□ -1.91
VPS35-204ENST00000563884 TEX50A0A1B0GTY4 177 aa3.12□□□□□ -1.91
VPS35-204ENST00000563884 TMEM50AO95807 157 aa3.12□□□□□ -1.91
VPS35-204ENST00000563884 LALBAP00709 142 aa3.12□□□□□ -1.91
VPS35-204ENST00000563884 ORM1P02763 201 aa3.12□□□□□ -1.91
VPS35-204ENST00000563884 PRM2P04554 102 aa3.12□□□□□ -1.91
VPS35-204ENST00000563884 CD3GP09693 182 aa3.12□□□□□ -1.91
VPS35-204ENST00000563884 PPT1P50897 306 aa3.12□□□□□ -1.91
VPS35-204ENST00000563884 PPP5CP53041 499 aa3.12□□□□□ -1.91
VPS35-204ENST00000563884 OPCMLQ14982 345 aa3.12□□□□□ -1.91
VPS35-204ENST00000563884 RAB11BQ15907 218 aa3.12□□□□□ -1.91
VPS35-204ENST00000563884 IDNKQ5T6J7 187 aa3.12□□□□□ -1.91
VPS35-204ENST00000563884 C12orf73Q69YU5 71 aa3.12□□□□□ -1.91
VPS35-204ENST00000563884 AMTNQ6UX39 209 aa3.12□□□□□ -1.91
VPS35-204ENST00000563884 H1FOOQ8IZA3 346 aaPredicted RBP3.12□□□□□ -1.91
VPS35-204ENST00000563884 OR10G7Q8NGN6 311 aa3.12□□□□□ -1.91
VPS35-204ENST00000563884 OR8J1Q8NGP2 316 aa3.12□□□□□ -1.91
VPS35-204ENST00000563884 ZC2HC1AQ96GY0 325 aa3.12□□□□□ -1.91
VPS35-204ENST00000563884 HDHD3Q9BSH5 251 aaPredicted RBP3.12□□□□□ -1.91
VPS35-204ENST00000563884 COMMD9Q9P000 198 aa3.12□□□□□ -1.91
VPS35-204ENST00000563884 PRNDQ9UKY0 176 aa3.12□□□□□ -1.91
VPS35-204ENST00000563884 SPATA2Q9UM82 520 aa3.12□□□□□ -1.91
VPS35-204ENST00000563884 OR51B2Q9Y5P1 312 aa3.12□□□□□ -1.91
VPS35-204ENST00000563884 KIF25-AS1Q9Y6Z4 181 aa3.12□□□□□ -1.91
VPS35-204ENST00000563884 RNF222A6NCQ9 220 aa3.11□□□□□ -1.91
VPS35-204ENST00000563884 F6UB75 175 aa3.11□□□□□ -1.91
VPS35-204ENST00000563884 H7C1H1 209 aa3.11□□□□□ -1.91
VPS35-204ENST00000563884 M0R129 80 aa3.11□□□□□ -1.91
VPS35-204ENST00000563884 CRXO43186 299 aaPredicted RBP3.11□□□□□ -1.91
VPS35-204ENST00000563884 CLN5O75503 358 aa3.11□□□□□ -1.91
VPS35-204ENST00000563884 IGHV3-48P01763 117 aa3.11□□□□□ -1.91
VPS35-204ENST00000563884 SEC11BP0C7V7 166 aa3.11□□□□□ -1.91
VPS35-204ENST00000563884 RANBP1P43487 201 aa3.11□□□□□ -1.91
VPS35-204ENST00000563884 CNN1P51911 297 aaKnown RBP3.11□□□□□ -1.91
VPS35-204ENST00000563884 DEFB1P60022 68 aa3.11□□□□□ -1.91
VPS35-204ENST00000563884 RPL30P62888 115 aaKnown RBP3.11□□□□□ -1.91
VPS35-204ENST00000563884 CACNG7P62955 275 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms