RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 CDK5RAP2Q96SN8 1893 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 TBL1YQ9BQ87 522 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 C20orf78Q9BR46 151 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 BCL2L10Q9HD36 194 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 ZNF222Q9UK12 451 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 FIS1Q9Y3D6 152 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 SIPA1L1O43166 1804 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 MAP2P11137 1827 aaKnown RBP2.21□□□□□ -2.06
CD44-229ENST00000528672 CUL7Q14999 1698 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 QRICH2Q9H0J4 1663 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 A0A1B0GUL6 1792 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 HECW1Q76N89 1606 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 MROH1Q8NDA8 1641 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 MADDQ8WXG6 1647 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 PLEKHH2Q8IVE3 1493 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 DSPPQ9NZW4 1301 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 ARAP2Q8WZ64 1704 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 ABCA3Q99758 1704 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 ZNF318Q5VUA4 2279 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 MYH9P35579 1960 aaKnown RBP2.2□□□□□ -2.06
CD44-229ENST00000528672 ANKARQ7Z5J8 1434 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 ITGB4P16144 1822 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 TRBV6-6A0A0A6YYG2 114 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 IGHV5-10-1A0A0J9YXX1 117 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 GRIFINA4D1Z8 144 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 A8MUN3 132 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 A8MWV9 139 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 NDUFC2-KCTD14E9PQ53 114 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 APOC4-APOC2K7ER74 178 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 M0R381 172 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 LST1O00453 97 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 UPK2O00526 184 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 ZNF861PO60384 105 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 PROSCO94903 275 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 FSTL3O95633 263 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 TRACP01848 142 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 APOC2P02655 101 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 TCRAP04437 139 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 ZNF286BP0CG31 522 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 SLC25A4P12235 298 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 ELK1P19419 428 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 ASIPP42127 132 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 PSMB3P49720 205 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 LINC00313P59037 77 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 TAS2R45P59539 299 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 ELOBQ15370 118 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 LINC00303Q3SY05 128 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 C6orf99Q4VX62 202 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 SPATA45Q537H7 98 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 UBE2NLQ5JXB2 153 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 PRNTQ86SH4 94 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 TEN1Q86WV5 123 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 KRTAP11-1Q8IUC1 163 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 ZNF709Q8N972 641 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 WFDC11Q8NEX6 87 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 OR2T35Q8NGX2 323 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 OR10AG1Q8NH19 301 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 LSM10Q969L4 123 aaKnown RBP2.2□□□□□ -2.06
CD44-229ENST00000528672 FAM104AQ969W3 186 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 C2orf50Q96LR7 162 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 AMELYQ99218 206 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 SHANK2-AS3Q9BTD1 123 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 EIF5A2Q9GZV4 153 aaKnown RBP2.2□□□□□ -2.06
CD44-229ENST00000528672 RPP21Q9H633 154 aaKnown RBP2.2□□□□□ -2.06
CD44-229ENST00000528672 PRR34Q9NV39 138 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 NDUFB11Q9NX14 153 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 TP53TG3Q9ULZ0 132 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 KLK5Q9Y337 293 aaPredicted RBP2.2□□□□□ -2.06
CD44-229ENST00000528672 V9GYH0 126 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 ABCC2Q92887 1545 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 SYCP2Q9BX26 1530 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 CHD3Q12873 2000 aaKnown RBP2.2□□□□□ -2.06
CD44-229ENST00000528672 KIF14Q15058 1648 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 KNDC1Q76NI1 1749 aa2.2□□□□□ -2.06
CD44-229ENST00000528672 NRKQ7Z2Y5 1582 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 DIP2BQ9P265 1576 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 MYH1P12882 1939 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 CITO14578 2027 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 RBBP6Q7Z6E9 1792 aaKnown RBP2.19□□□□□ -2.06
CD44-229ENST00000528672 ARHGAP5Q13017 1502 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 GPATCH8Q9UKJ3 1502 aaKnown RBP2.19□□□□□ -2.06
CD44-229ENST00000528672 TRBV24-1A0A075B6N3 115 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 IGKV1-27A0A075B6S5 117 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 TRGV5A0A0B4J1U4 118 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 IGHV6-1A0A0B4J1U7 121 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 LOC389332A0A1B0GUA5 103 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 A0A1B0GVX0 72 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 A0A1W2PPM0 123 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 IRGMA1A4Y4 181 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 H3BT86 120 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 GYPAP02724 150 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 CXCL1P09341 107 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 SFTA3P0C7M3 94 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 TLX1NBP0CAT3 122 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 IGHV1-8P0DP01 117 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 FABP2P12104 132 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 HLA-DRB4P13762 266 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 ZNF80P51504 273 aaPredicted RBP2.19□□□□□ -2.06
CD44-229ENST00000528672 LGALS9BQ3B8N2 356 aa2.19□□□□□ -2.06
CD44-229ENST00000528672 MPV17L2Q567V2 206 aa2.19□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms