RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 SRD5A1P18405 259 aa15.61■□□□□ 0.09
COL27A1-207ENST00000494090 RPL15P61313 204 aaKnown RBP15.61■□□□□ 0.09
COL27A1-207ENST00000494090 HSD52Q0P140 79 aa15.61■□□□□ 0.09
COL27A1-207ENST00000494090 PIP4P2Q8N4L2 257 aa15.61■□□□□ 0.09
COL27A1-207ENST00000494090 PHLDA1Q8WV24 401 aaPredicted RBP15.61■□□□□ 0.09
COL27A1-207ENST00000494090 FNDC4Q9H6D8 234 aaPredicted RBP15.61■□□□□ 0.09
COL27A1-207ENST00000494090 TMEM256Q8N2U0 113 aa15.6■□□□□ 0.09
COL27A1-207ENST00000494090 PRTN3P24158 256 aa15.6■□□□□ 0.09
COL27A1-207ENST00000494090 NUP35Q8NFH5 326 aa15.6■□□□□ 0.09
COL27A1-207ENST00000494090 TMEM238C9JI98 176 aa15.6■□□□□ 0.09
COL27A1-207ENST00000494090 HOXA3O43365 443 aaPredicted RBP15.6■□□□□ 0.09
COL27A1-207ENST00000494090 CKS1BP61024 79 aa15.6■□□□□ 0.09
COL27A1-207ENST00000494090 PLEKHB2Q96CS7 222 aa15.6■□□□□ 0.09
COL27A1-207ENST00000494090 INSP01308 110 aa15.59■□□□□ 0.09
COL27A1-207ENST00000494090 DPH3P1Q9H4G8 78 aa15.59■□□□□ 0.09
COL27A1-207ENST00000494090 TRAV2A0A0B4J234 112 aa15.59■□□□□ 0.09
COL27A1-207ENST00000494090 SRRM4A7MD48 611 aaKnown RBP15.59■□□□□ 0.09
COL27A1-207ENST00000494090 TOMM40O96008 361 aa15.59■□□□□ 0.09
COL27A1-207ENST00000494090 PYY3Q5JQD4 70 aa15.59■□□□□ 0.09
COL27A1-207ENST00000494090 SSC4DQ8WTU2 575 aa15.59■□□□□ 0.09
COL27A1-207ENST00000494090 FNDC1Q4ZHG4 1894 aaPredicted RBP15.59■□□□□ 0.09
COL27A1-207ENST00000494090 THADAQ6YHU6 1953 aa15.59■□□□□ 0.09
COL27A1-207ENST00000494090 LYZL1Q6UWQ5 148 aa15.59■□□□□ 0.09
COL27A1-207ENST00000494090 MRPL27Q9P0M9 148 aaKnown RBP15.59■□□□□ 0.09
COL27A1-207ENST00000494090 D6R8Y8 96 aa15.58■□□□□ 0.09
COL27A1-207ENST00000494090 RNASE2P10153 161 aaKnown RBP15.58■□□□□ 0.09
COL27A1-207ENST00000494090 RSPO3Q9BXY4 272 aaPredicted RBP15.58■□□□□ 0.09
COL27A1-207ENST00000494090 IGKV1-6A0A0C4DH72 117 aa15.58■□□□□ 0.08
COL27A1-207ENST00000494090 GGTLC3B5MD39 225 aa15.58■□□□□ 0.08
COL27A1-207ENST00000494090 LINC00205P59089 165 aa15.58■□□□□ 0.08
COL27A1-207ENST00000494090 S100A7L2Q5SY68 101 aa15.58■□□□□ 0.08
COL27A1-207ENST00000494090 VCYO14598 125 aa15.58■□□□□ 0.08
COL27A1-207ENST00000494090 LINC00158P58513 81 aa15.58■□□□□ 0.08
COL27A1-207ENST00000494090 BRD3OSQ6XYD6 125 aa15.58■□□□□ 0.08
COL27A1-207ENST00000494090 ZNF876PQ49A33 203 aa15.57■□□□□ 0.08
COL27A1-207ENST00000494090 CNOT1A5YKK6 2376 aaKnown RBP15.57■□□□□ 0.08
COL27A1-207ENST00000494090 RASL10AQ92737 203 aa15.57■□□□□ 0.08
COL27A1-207ENST00000494090 C1orf147Q96MC9 270 aaPredicted RBP15.57■□□□□ 0.08
COL27A1-207ENST00000494090 TRAV16A0A0A6YYK6 109 aaPredicted RBP15.57■□□□□ 0.08
COL27A1-207ENST00000494090 PSG3Q16557 428 aa15.57■□□□□ 0.08
COL27A1-207ENST00000494090 ZNF474Q6S9Z5 364 aaPredicted RBP15.57■□□□□ 0.08
COL27A1-207ENST00000494090 TRGV1A0A0A0MS02 117 aa15.57■□□□□ 0.08
COL27A1-207ENST00000494090 HS3ST6Q96QI5 342 aa15.57■□□□□ 0.08
COL27A1-207ENST00000494090 TCF20Q9UGU0 1960 aaKnown RBP15.56■□□□□ 0.08
COL27A1-207ENST00000494090 MPDZO75970 2070 aa15.56■□□□□ 0.08
COL27A1-207ENST00000494090 KLHL30-AS1Q8NEE0 82 aa15.56■□□□□ 0.08
COL27A1-207ENST00000494090 CRIM1Q9NZV1 1036 aa15.56■□□□□ 0.08
COL27A1-207ENST00000494090 TRAV8-2A0A0B4J237 113 aa15.55■□□□□ 0.08
COL27A1-207ENST00000494090 TDGF1P3P51864 188 aa15.55■□□□□ 0.08
COL27A1-207ENST00000494090 RPRMLQ8N4K4 120 aa15.55■□□□□ 0.08
COL27A1-207ENST00000494090 MED12Q93074 2177 aa15.55■□□□□ 0.08
COL27A1-207ENST00000494090 TEX43Q6ZNM6 134 aa15.55■□□□□ 0.08
COL27A1-207ENST00000494090 ZNF329Q86UD4 541 aa15.55■□□□□ 0.08
COL27A1-207ENST00000494090 ATXN8Q156A1 80 aa15.55■□□□□ 0.08
COL27A1-207ENST00000494090 LCN12Q6JVE5 192 aa15.55■□□□□ 0.08
COL27A1-207ENST00000494090 DAZ1Q9NQZ3 744 aaKnown RBP15.55■□□□□ 0.08
COL27A1-207ENST00000494090 SH2D1AO60880 128 aa15.55■□□□□ 0.08
COL27A1-207ENST00000494090 C3orf79P0CE67 100 aa15.55■□□□□ 0.08
COL27A1-207ENST00000494090 JPT2Q9H910 190 aa15.55■□□□□ 0.08
COL27A1-207ENST00000494090 C9JQL5 133 aa15.54■□□□□ 0.08
COL27A1-207ENST00000494090 NCR2O95944 276 aa15.54■□□□□ 0.08
COL27A1-207ENST00000494090 LMO1P25800 156 aa15.54■□□□□ 0.08
COL27A1-207ENST00000494090 TMEM95Q3KNT9 176 aa15.54■□□□□ 0.08
COL27A1-207ENST00000494090 M0R2P5 195 aa15.54■□□□□ 0.08
COL27A1-207ENST00000494090 PDE6HQ13956 83 aa15.54■□□□□ 0.08
COL27A1-207ENST00000494090 CD300EQ496F6 205 aaPredicted RBP15.54■□□□□ 0.08
COL27A1-207ENST00000494090 BPESC1Q9GZL8 116 aa15.54■□□□□ 0.08
COL27A1-207ENST00000494090 K7ENP7 123 aa15.54■□□□□ 0.08
COL27A1-207ENST00000494090 WFDC12Q8WWY7 111 aa15.54■□□□□ 0.08
COL27A1-207ENST00000494090 RHPN1-AS1Q9BWJ2 59 aa15.54■□□□□ 0.08
COL27A1-207ENST00000494090 LCNL1Q6ZST4 164 aa15.54■□□□□ 0.08
COL27A1-207ENST00000494090 COL8A2P25067 703 aa15.53■□□□□ 0.08
COL27A1-207ENST00000494090 ERG28Q9UKR5 140 aa15.53■□□□□ 0.08
COL27A1-207ENST00000494090 IGHV4-39P01824 125 aa15.53■□□□□ 0.08
COL27A1-207ENST00000494090 AKAP6Q13023 2319 aa15.53■□□□□ 0.08
COL27A1-207ENST00000494090 TSC2P49815 1807 aa15.53■□□□□ 0.08
COL27A1-207ENST00000494090 MEGF9Q9H1U4 602 aa15.53■□□□□ 0.08
COL27A1-207ENST00000494090 TRAV12-3A0A0B4J271 114 aa15.53■□□□□ 0.08
COL27A1-207ENST00000494090 FCN3O75636 299 aa15.53■□□□□ 0.08
COL27A1-207ENST00000494090 PRB4P10163 310 aaPredicted RBP15.53■□□□□ 0.08
COL27A1-207ENST00000494090 SAA4P35542 130 aa15.53■□□□□ 0.08
COL27A1-207ENST00000494090 KLF17Q5JT82 389 aaPredicted RBP15.53■□□□□ 0.08
COL27A1-207ENST00000494090 ZNF479Q96JC4 524 aa15.53■□□□□ 0.08
COL27A1-207ENST00000494090 CST9LQ9H4G1 147 aa15.53■□□□□ 0.08
COL27A1-207ENST00000494090 A6NNC1 897 aa15.53■□□□□ 0.08
COL27A1-207ENST00000494090 E7EQL1 145 aa15.52■□□□□ 0.08
COL27A1-207ENST00000494090 IGKV1-16P04430 117 aa15.52■□□□□ 0.08
COL27A1-207ENST00000494090 UBE2E1P51965 193 aa15.52■□□□□ 0.08
COL27A1-207ENST00000494090 SAMD5Q5TGI4 173 aa15.52■□□□□ 0.08
COL27A1-207ENST00000494090 MRPL52Q86TS9 123 aaKnown RBP15.52■□□□□ 0.08
COL27A1-207ENST00000494090 MSMBP08118 114 aa15.52■□□□□ 0.07
COL27A1-207ENST00000494090 NCOR1P1Q9H4R4 102 aa15.52■□□□□ 0.07
COL27A1-207ENST00000494090 C11orf68Q9H3H3 251 aaKnown RBP15.52■□□□□ 0.07
COL27A1-207ENST00000494090 SRSF6Q13247 344 aaKnown RBP15.51■□□□□ 0.07
COL27A1-207ENST00000494090 LYPD2Q6UXB3 125 aa15.51■□□□□ 0.07
COL27A1-207ENST00000494090 GFRA4Q9GZZ7 299 aa15.51■□□□□ 0.07
COL27A1-207ENST00000494090 A8MWV9 139 aa15.51■□□□□ 0.07
COL27A1-207ENST00000494090 COL4A6Q14031 1691 aa15.51■□□□□ 0.07
COL27A1-207ENST00000494090 MYLKQ15746 1914 aa15.51■□□□□ 0.07
COL27A1-207ENST00000494090 MLANAQ16655 118 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms