RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 LINC00304Q8N9R0 145 aa2.49□□□□□ -2.01
VPS13A-212ENST00000493341 TVP23CQ96ET8 276 aa2.49□□□□□ -2.01
VPS13A-212ENST00000493341 C19orf12Q9NSK7 152 aa2.49□□□□□ -2.01
VPS13A-212ENST00000493341 ZSWIM8A7E2V4 1837 aa2.49□□□□□ -2.01
VPS13A-212ENST00000493341 ZNF236Q9UL36 1845 aa2.48□□□□□ -2.01
VPS13A-212ENST00000493341 ZNF860A6NHJ4 632 aa2.48□□□□□ -2.01
VPS13A-212ENST00000493341 E7EQL1 145 aa2.48□□□□□ -2.01
VPS13A-212ENST00000493341 H7C2G1 150 aa2.48□□□□□ -2.01
VPS13A-212ENST00000493341 IGKV1-17P01599 117 aa2.48□□□□□ -2.01
VPS13A-212ENST00000493341 APOA2P02652 100 aa2.48□□□□□ -2.01
VPS13A-212ENST00000493341 MALSU1Q96EH3 234 aa2.48□□□□□ -2.01
VPS13A-212ENST00000493341 BATF3Q9NR55 127 aa2.48□□□□□ -2.01
VPS13A-212ENST00000493341 OSTCQ9NRP0 149 aa2.48□□□□□ -2.01
VPS13A-212ENST00000493341 MED11Q9P086 117 aa2.48□□□□□ -2.01
VPS13A-212ENST00000493341 PCTPQ9UKL6 214 aa2.48□□□□□ -2.01
VPS13A-212ENST00000493341 ZNF106Q9H2Y7 1883 aaKnown RBP2.48□□□□□ -2.01
VPS13A-212ENST00000493341 LOC105371267A0A1B0GV96 52 aa2.47□□□□□ -2.01
VPS13A-212ENST00000493341 PIAS1O75925 651 aa2.47□□□□□ -2.01
VPS13A-212ENST00000493341 IGKV1-16P04430 117 aa2.47□□□□□ -2.01
VPS13A-212ENST00000493341 CSN2P05814 226 aa2.47□□□□□ -2.01
VPS13A-212ENST00000493341 SCGB2B2Q4G0G5 96 aa2.47□□□□□ -2.01
VPS13A-212ENST00000493341 TMEM78Q5T7P6 136 aa2.47□□□□□ -2.01
VPS13A-212ENST00000493341 RPP25LQ8N5L8 163 aaKnown RBP2.47□□□□□ -2.01
VPS13A-212ENST00000493341 TUBA4BQ9H853 241 aa2.47□□□□□ -2.01
VPS13A-212ENST00000493341 C8orf4Q9NR00 106 aa2.47□□□□□ -2.01
VPS13A-212ENST00000493341 LAMA4Q16363 1823 aa2.47□□□□□ -2.01
VPS13A-212ENST00000493341 IGKV1D-17A0A075B6S4 117 aa2.47□□□□□ -2.01
VPS13A-212ENST00000493341 EMP1P54849 157 aa2.47□□□□□ -2.01
VPS13A-212ENST00000493341 YPEL3P61236 119 aaPredicted RBP2.47□□□□□ -2.01
VPS13A-212ENST00000493341 IGFL3Q6UXB1 125 aa2.47□□□□□ -2.01
VPS13A-212ENST00000493341 OR8D4Q8NGM9 314 aa2.47□□□□□ -2.01
VPS13A-212ENST00000493341 WFDC5Q8TCV5 224 aa2.47□□□□□ -2.01
VPS13A-212ENST00000493341 MRPS24Q96EL2 167 aaKnown RBP2.47□□□□□ -2.01
VPS13A-212ENST00000493341 PBOV1Q9GZY1 135 aa2.47□□□□□ -2.01
VPS13A-212ENST00000493341 RNF122Q9H9V4 155 aa2.47□□□□□ -2.01
VPS13A-212ENST00000493341 MYH4Q9Y623 1939 aa2.46□□□□□ -2.01
VPS13A-212ENST00000493341 MYH11P35749 1972 aa2.46□□□□□ -2.02
VPS13A-212ENST00000493341 DUXBA0A1W2PPF3 345 aa2.46□□□□□ -2.02
VPS13A-212ENST00000493341 FNDC10F2Z333 226 aa2.46□□□□□ -2.02
VPS13A-212ENST00000493341 TAX1BP3O14907 124 aa2.46□□□□□ -2.02
VPS13A-212ENST00000493341 ALX1Q15699 326 aa2.46□□□□□ -2.02
VPS13A-212ENST00000493341 SAMD13Q5VXD3 122 aa2.46□□□□□ -2.02
VPS13A-212ENST00000493341 OR13D1Q8NGV5 346 aa2.46□□□□□ -2.02
VPS13A-212ENST00000493341 TMEM106AQ96A25 262 aa2.46□□□□□ -2.02
VPS13A-212ENST00000493341 CKLFQ9UBR5 152 aa2.46□□□□□ -2.02
VPS13A-212ENST00000493341 ALPK3Q96L96 1907 aa2.46□□□□□ -2.02
VPS13A-212ENST00000493341 COL11A1P12107 1806 aaPredicted RBP2.46□□□□□ -2.02
VPS13A-212ENST00000493341 TNRC18O15417 2968 aaPredicted RBP2.46□□□□□ -2.02
VPS13A-212ENST00000493341 HEATR5AQ86XA9 2040 aa2.46□□□□□ -2.02
VPS13A-212ENST00000493341 PLXNA1Q9UIW2 1896 aa2.46□□□□□ -2.02
VPS13A-212ENST00000493341 A0A1B0GVG6 124 aa2.46□□□□□ -2.02
VPS13A-212ENST00000493341 A0A1W2PRE2 83 aa2.46□□□□□ -2.02
VPS13A-212ENST00000493341 SDHAF1A6NFY7 115 aa2.46□□□□□ -2.02
VPS13A-212ENST00000493341 ORC5O43913 435 aa2.46□□□□□ -2.02
VPS13A-212ENST00000493341 PFDN1O60925 122 aa2.46□□□□□ -2.02
VPS13A-212ENST00000493341 NBEAP1P0C6P0 100 aa2.46□□□□□ -2.02
VPS13A-212ENST00000493341 NFYAP23511 347 aaPredicted RBP2.46□□□□□ -2.02
VPS13A-212ENST00000493341 SRP14P37108 136 aaKnown RBP2.46□□□□□ -2.02
VPS13A-212ENST00000493341 EIF5AP63241 154 aaKnown RBP2.46□□□□□ -2.02
VPS13A-212ENST00000493341 RELAQ04206 551 aa2.46□□□□□ -2.02
VPS13A-212ENST00000493341 RRN3P1Q2M238 152 aa2.46□□□□□ -2.02
VPS13A-212ENST00000493341 PABPC1L2AQ5JQF8 200 aa2.46□□□□□ -2.02
VPS13A-212ENST00000493341 FAM27BQ5VT28 67 aa2.46□□□□□ -2.02
VPS13A-212ENST00000493341 OR4X2Q8NGF9 303 aa2.46□□□□□ -2.02
VPS13A-212ENST00000493341 MBD3L1Q8WWY6 194 aa2.46□□□□□ -2.02
VPS13A-212ENST00000493341 OR2J1Q9GZK6 312 aa2.46□□□□□ -2.02
VPS13A-212ENST00000493341 PSORS1C2Q9UIG4 136 aa2.46□□□□□ -2.02
VPS13A-212ENST00000493341 COL1A2P08123 1366 aa2.45□□□□□ -2.02
VPS13A-212ENST00000493341 A0A087X0T9 212 aa2.45□□□□□ -2.02
VPS13A-212ENST00000493341 CSRP1P21291 193 aaKnown RBP2.45□□□□□ -2.02
VPS13A-212ENST00000493341 ERHP84090 104 aaKnown RBP2.45□□□□□ -2.02
VPS13A-212ENST00000493341 ZNF90Q03938 601 aa2.45□□□□□ -2.02
VPS13A-212ENST00000493341 LTC4SQ16873 150 aa2.45□□□□□ -2.02
VPS13A-212ENST00000493341 PHF13Q86YI8 300 aaPredicted RBP2.45□□□□□ -2.02
VPS13A-212ENST00000493341 DYNAPQ8N1N2 210 aa2.45□□□□□ -2.02
VPS13A-212ENST00000493341 SIGLECL1Q8N7X8 197 aa2.45□□□□□ -2.02
VPS13A-212ENST00000493341 Q8NDZ9 215 aa2.45□□□□□ -2.02
VPS13A-212ENST00000493341 OR10J5Q8NHC4 309 aa2.45□□□□□ -2.02
VPS13A-212ENST00000493341 STAG3L4Q8TBR4 150 aa2.45□□□□□ -2.02
VPS13A-212ENST00000493341 RMND5BQ96G75 393 aaPredicted RBP2.45□□□□□ -2.02
VPS13A-212ENST00000493341 ARHGAP32A7KAX9 2087 aa2.45□□□□□ -2.02
VPS13A-212ENST00000493341 CUL9Q8IWT3 2517 aa2.45□□□□□ -2.02
VPS13A-212ENST00000493341 GREB1Q4ZG55 1949 aa2.45□□□□□ -2.02
VPS13A-212ENST00000493341 SDK2Q58EX2 2172 aa2.45□□□□□ -2.02
VPS13A-212ENST00000493341 PTPRSQ13332 1948 aa2.44□□□□□ -2.02
VPS13A-212ENST00000493341 LRRC37A2A6NM11 1700 aa2.44□□□□□ -2.02
VPS13A-212ENST00000493341 IGHV1-18A0A0C4DH31 117 aa2.44□□□□□ -2.02
VPS13A-212ENST00000493341 ARPC4P59998 168 aa2.44□□□□□ -2.02
VPS13A-212ENST00000493341 TMEM258P61165 79 aa2.44□□□□□ -2.02
VPS13A-212ENST00000493341 SURF2Q15527 256 aaPredicted RBP2.44□□□□□ -2.02
VPS13A-212ENST00000493341 KHDC3LQ587J8 217 aa2.44□□□□□ -2.02
VPS13A-212ENST00000493341 BCL2L15Q5TBC7 163 aa2.44□□□□□ -2.02
VPS13A-212ENST00000493341 DPPA3Q6W0C5 159 aa2.44□□□□□ -2.02
VPS13A-212ENST00000493341 PLEKHB2Q96CS7 222 aa2.44□□□□□ -2.02
VPS13A-212ENST00000493341 SLAMF6Q96DU3 332 aa2.44□□□□□ -2.02
VPS13A-212ENST00000493341 TMEM133Q9H2Q1 129 aa2.44□□□□□ -2.02
VPS13A-212ENST00000493341 CCL26Q9Y258 94 aa2.44□□□□□ -2.02
VPS13A-212ENST00000493341 PCNTO95613 3336 aa2.44□□□□□ -2.02
VPS13A-212ENST00000493341 SHROOM3Q8TF72 1996 aa2.44□□□□□ -2.02
VPS13A-212ENST00000493341 IGKV1-9A0A0C4DH69 117 aa2.44□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 176.2 ms