RNA–Protein interactions for RNA: ENST00000484581.6

VPS13A-211, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2 BASIC

Gene VPS13A, Length 1,155 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-211ENST00000484581 Q96M85 177 aa1.94□□□□□ -2.1
VPS13A-211ENST00000484581 ZNF714Q96N38 554 aa1.94□□□□□ -2.1
VPS13A-211ENST00000484581 OR2H1Q9GZK4 316 aa1.94□□□□□ -2.1
VPS13A-211ENST00000484581 C6orf62Q9GZU0 229 aaPredicted RBP1.94□□□□□ -2.1
VPS13A-211ENST00000484581 CACYBPQ9HB71 228 aaKnown RBP1.94□□□□□ -2.1
VPS13A-211ENST00000484581 NAT8BQ9UHF3 227 aa1.94□□□□□ -2.1
VPS13A-211ENST00000484581 MYO5AQ9Y4I1 1855 aaKnown RBP1.93□□□□□ -2.1
VPS13A-211ENST00000484581 HIST1H2BKO60814 126 aa1.93□□□□□ -2.1
VPS13A-211ENST00000484581 LYZL6O75951 148 aa1.93□□□□□ -2.1
VPS13A-211ENST00000484581 HIST1H2BJP06899 126 aa1.93□□□□□ -2.1
VPS13A-211ENST00000484581 S100A11P31949 105 aa1.93□□□□□ -2.1
VPS13A-211ENST00000484581 POLR2HP52434 150 aaKnown RBP1.93□□□□□ -2.1
VPS13A-211ENST00000484581 RPS28P62857 69 aaKnown RBP1.93□□□□□ -2.1
VPS13A-211ENST00000484581 EIF3IQ13347 325 aaKnown RBP1.93□□□□□ -2.1
VPS13A-211ENST00000484581 LINC00301Q8NCQ3 95 aa1.93□□□□□ -2.1
VPS13A-211ENST00000484581 TMEM35BQ8NCS4 154 aa1.93□□□□□ -2.1
VPS13A-211ENST00000484581 ST6GALNAC3Q8NDV1 305 aa1.93□□□□□ -2.1
VPS13A-211ENST00000484581 CCDC115Q96NT0 180 aa1.93□□□□□ -2.1
VPS13A-211ENST00000484581 LY96Q9Y6Y9 160 aa1.93□□□□□ -2.1
VPS13A-211ENST00000484581 NCAPD3P42695 1498 aa1.93□□□□□ -2.1
VPS13A-211ENST00000484581 ALPK2Q86TB3 2170 aa1.92□□□□□ -2.1
VPS13A-211ENST00000484581 TRAV14DV4A0A0A6YYC5 116 aa1.92□□□□□ -2.1
VPS13A-211ENST00000484581 TRAV12-1A0A0B4J245 112 aa1.92□□□□□ -2.1
VPS13A-211ENST00000484581 OR1I1O60431 355 aa1.92□□□□□ -2.1
VPS13A-211ENST00000484581 IFNA4P05014 189 aa1.92□□□□□ -2.1
VPS13A-211ENST00000484581 SCGB1A1P11684 91 aa1.92□□□□□ -2.1
VPS13A-211ENST00000484581 RPL7P18124 248 aaKnown RBP1.92□□□□□ -2.1
VPS13A-211ENST00000484581 PDE6HQ13956 83 aa1.92□□□□□ -2.1
VPS13A-211ENST00000484581 OR2T35Q8NGX2 323 aa1.92□□□□□ -2.1
VPS13A-211ENST00000484581 OR4K15Q8NH41 348 aa1.92□□□□□ -2.1
VPS13A-211ENST00000484581 AIF1LQ9BQI0 150 aa1.92□□□□□ -2.1
VPS13A-211ENST00000484581 TCEAL2Q9H3H9 227 aaPredicted RBP1.92□□□□□ -2.1
VPS13A-211ENST00000484581 OR5AC2Q9NZP5 309 aa1.92□□□□□ -2.1
VPS13A-211ENST00000484581 MED31Q9Y3C7 131 aa1.92□□□□□ -2.1
VPS13A-211ENST00000484581 BCL9O00512 1426 aa1.91□□□□□ -2.1
VPS13A-211ENST00000484581 SCN3AQ9NY46 2000 aa1.91□□□□□ -2.1
VPS13A-211ENST00000484581 N4BP2Q86UW6 1770 aaPredicted RBP1.91□□□□□ -2.1
VPS13A-211ENST00000484581 TRGV2A0A075B6R0 118 aa1.91□□□□□ -2.1
VPS13A-211ENST00000484581 C2orf70A6NJV1 201 aa1.91□□□□□ -2.1
VPS13A-211ENST00000484581 GABARAPH6UMI1 98 aa1.91□□□□□ -2.1
VPS13A-211ENST00000484581 OVOL1O14753 267 aa1.91□□□□□ -2.1
VPS13A-211ENST00000484581 DHFRP00374 187 aa1.91□□□□□ -2.1
VPS13A-211ENST00000484581 OR10J4P0C629 311 aa1.91□□□□□ -2.1
VPS13A-211ENST00000484581 RPL35P42766 123 aaKnown RBP1.91□□□□□ -2.1
VPS13A-211ENST00000484581 KRTAP12-1P59990 96 aa1.91□□□□□ -2.1
VPS13A-211ENST00000484581 KRTAP13-1Q8IUC0 172 aa1.91□□□□□ -2.1
VPS13A-211ENST00000484581 OR5D16Q8NGK9 328 aa1.91□□□□□ -2.1
VPS13A-211ENST00000484581 SFT2D1Q8WV19 159 aa1.91□□□□□ -2.1
VPS13A-211ENST00000484581 COL5A3P25940 1745 aaPredicted RBP1.91□□□□□ -2.1
VPS13A-211ENST00000484581 HIVEP2P31629 2446 aa1.9□□□□□ -2.1
VPS13A-211ENST00000484581 CR1P17927 2039 aa1.9□□□□□ -2.11
VPS13A-211ENST00000484581 ARL5CA6NH57 179 aa1.9□□□□□ -2.11
VPS13A-211ENST00000484581 K7ERJ3 54 aa1.9□□□□□ -2.11
VPS13A-211ENST00000484581 RER1O15258 196 aa1.9□□□□□ -2.11
VPS13A-211ENST00000484581 RPS3P23396 243 aaKnown RBP eCLIP1.9□□□□□ -2.11
VPS13A-211ENST00000484581 ROMO1P60602 79 aa1.9□□□□□ -2.11
VPS13A-211ENST00000484581 DEFB113Q30KQ7 82 aa1.9□□□□□ -2.11
VPS13A-211ENST00000484581 HRCT1Q6UXD1 115 aa1.9□□□□□ -2.11
VPS13A-211ENST00000484581 CHCHD1Q96BP2 118 aaKnown RBP1.9□□□□□ -2.11
VPS13A-211ENST00000484581 ZNF625Q96I27 306 aaPredicted RBP1.9□□□□□ -2.11
VPS13A-211ENST00000484581 SPANXCQ9NY87 97 aa1.9□□□□□ -2.11
VPS13A-211ENST00000484581 MYOFQ9NZM1 2061 aa1.9□□□□□ -2.11
VPS13A-211ENST00000484581 IGHV1-58A0A0C4DH39 117 aa1.89□□□□□ -2.11
VPS13A-211ENST00000484581 TRBV6-5A0A0K0K1A5 114 aa1.89□□□□□ -2.11
VPS13A-211ENST00000484581 C17orf112F2Z3M2 114 aa1.89□□□□□ -2.11
VPS13A-211ENST00000484581 KPNA4O00629 521 aaPredicted RBP1.89□□□□□ -2.11
VPS13A-211ENST00000484581 BRS3P32247 399 aa1.89□□□□□ -2.11
VPS13A-211ENST00000484581 NDUFA6P56556 154 aa1.89□□□□□ -2.11
VPS13A-211ENST00000484581 RAB4BP61018 213 aa1.89□□□□□ -2.11
VPS13A-211ENST00000484581 ZC2HC1AQ96GY0 325 aa1.89□□□□□ -2.11
VPS13A-211ENST00000484581 RETNLBQ9BQ08 111 aa1.89□□□□□ -2.11
VPS13A-211ENST00000484581 LXNQ9BS40 222 aa1.89□□□□□ -2.11
VPS13A-211ENST00000484581 TRAPPC2LQ9UL33 140 aa1.89□□□□□ -2.11
VPS13A-211ENST00000484581 SOX21Q9Y651 276 aaPredicted RBP1.89□□□□□ -2.11
VPS13A-211ENST00000484581 TRAPPC8Q9Y2L5 1435 aa1.89□□□□□ -2.11
VPS13A-211ENST00000484581 COL4A5P29400 1685 aa1.89□□□□□ -2.11
VPS13A-211ENST00000484581 COL11A1P12107 1806 aaPredicted RBP1.89□□□□□ -2.11
VPS13A-211ENST00000484581 A0A087WX48 190 aa1.88□□□□□ -2.11
VPS13A-211ENST00000484581 FABP2P12104 132 aa1.88□□□□□ -2.11
VPS13A-211ENST00000484581 SDC2P34741 201 aa1.88□□□□□ -2.11
VPS13A-211ENST00000484581 RAB5CP51148 216 aa1.88□□□□□ -2.11
VPS13A-211ENST00000484581 KLRD1Q13241 179 aa1.88□□□□□ -2.11
VPS13A-211ENST00000484581 TMEM254Q8TBM7 123 aa1.88□□□□□ -2.11
VPS13A-211ENST00000484581 RASL12Q9NYN1 266 aa1.88□□□□□ -2.11
VPS13A-211ENST00000484581 XIRP1Q702N8 1843 aaKnown RBP1.88□□□□□ -2.11
VPS13A-211ENST00000484581 RGS12O14924 1447 aa1.88□□□□□ -2.11
VPS13A-211ENST00000484581 INTS1Q8N201 2190 aaKnown RBP1.88□□□□□ -2.11
VPS13A-211ENST00000484581 ARAP1Q96P48 1450 aa1.88□□□□□ -2.11
VPS13A-211ENST00000484581 TRPM1Q7Z4N2 1603 aa1.88□□□□□ -2.11
VPS13A-211ENST00000484581 E7EUB6 86 aa1.87□□□□□ -2.11
VPS13A-211ENST00000484581 DEGS1O15121 323 aa1.87□□□□□ -2.11
VPS13A-211ENST00000484581 IGLV1-51P01701 117 aa1.87□□□□□ -2.11
VPS13A-211ENST00000484581 DSCR4P56555 118 aaPredicted RBP1.87□□□□□ -2.11
VPS13A-211ENST00000484581 PSG9Q00887 426 aa1.87□□□□□ -2.11
VPS13A-211ENST00000484581 C10orf55Q5SWW7 151 aa1.87□□□□□ -2.11
VPS13A-211ENST00000484581 ANKRD31Q8N7Z5 1873 aa1.87□□□□□ -2.11
VPS13A-211ENST00000484581 TMEM229BQ8NBD8 167 aa1.87□□□□□ -2.11
VPS13A-211ENST00000484581 C4orf3Q8WVX3 66 aa1.87□□□□□ -2.11
VPS13A-211ENST00000484581 POP5Q969H6 163 aaKnown RBP1.87□□□□□ -2.11
VPS13A-211ENST00000484581 MCEEQ96PE7 176 aa1.87□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms