RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 ZIC4Q8N9L1 334 aa7.34□□□□□ -1.23
COL6A3-210ENST00000473258 AFDNP55196 1824 aaKnown RBP7.34□□□□□ -1.23
COL6A3-210ENST00000473258 PI4KAP42356 2102 aa7.34□□□□□ -1.23
COL6A3-210ENST00000473258 IGKV1D-8A0A087WSZ0 117 aa7.34□□□□□ -1.23
COL6A3-210ENST00000473258 IL9P15248 144 aa7.34□□□□□ -1.23
COL6A3-210ENST00000473258 RPL35AP18077 110 aaKnown RBP7.34□□□□□ -1.23
COL6A3-210ENST00000473258 LDLRAD1Q5T700 205 aa7.34□□□□□ -1.23
COL6A3-210ENST00000473258 SLX4Q8IY92 1834 aa7.34□□□□□ -1.23
COL6A3-210ENST00000473258 LILRA5A6NI73 299 aa7.34□□□□□ -1.23
COL6A3-210ENST00000473258 HRKO00198 91 aa7.34□□□□□ -1.23
COL6A3-210ENST00000473258 IGKV1D-16P01601 117 aa7.34□□□□□ -1.23
COL6A3-210ENST00000473258 HMGA1P17096 107 aaKnown RBP7.34□□□□□ -1.23
COL6A3-210ENST00000473258 CTGFP29279 349 aa7.34□□□□□ -1.23
COL6A3-210ENST00000473258 FUSP35637 526 aaKnown RBP eCLIP7.34□□□□□ -1.23
COL6A3-210ENST00000473258 SPATA12Q7Z6I5 190 aa7.34□□□□□ -1.23
COL6A3-210ENST00000473258 HS3ST6Q96QI5 342 aa7.34□□□□□ -1.23
COL6A3-210ENST00000473258 TP53TG1Q9Y2A0 90 aa7.34□□□□□ -1.23
COL6A3-210ENST00000473258 LTBP4Q8N2S1 1624 aa7.34□□□□□ -1.23
COL6A3-210ENST00000473258 N4BP2Q86UW6 1770 aaPredicted RBP7.34□□□□□ -1.23
COL6A3-210ENST00000473258 IGHV3-49A0A0A0MS15 119 aa7.34□□□□□ -1.23
COL6A3-210ENST00000473258 RHODO00212 210 aa7.34□□□□□ -1.23
COL6A3-210ENST00000473258 SMRP1Q8NCR6 262 aa7.34□□□□□ -1.23
COL6A3-210ENST00000473258 IGHV1OR15-1A0A075B7D0 117 aa7.34□□□□□ -1.24
COL6A3-210ENST00000473258 COX7CP15954 63 aa7.34□□□□□ -1.24
COL6A3-210ENST00000473258 PRSS53Q2L4Q9 553 aa7.34□□□□□ -1.24
COL6A3-210ENST00000473258 Q8N1Y9 231 aa7.34□□□□□ -1.24
COL6A3-210ENST00000473258 ZNFX1Q9P2E3 1918 aaKnown RBP7.33□□□□□ -1.24
COL6A3-210ENST00000473258 TRAV3A0A0B4J244 114 aa7.33□□□□□ -1.24
COL6A3-210ENST00000473258 CHKB-CPT1BH3BT56 60 aa7.33□□□□□ -1.24
COL6A3-210ENST00000473258 CCL21O00585 134 aa7.33□□□□□ -1.24
COL6A3-210ENST00000473258 PRCDQ00LT1 54 aa7.33□□□□□ -1.24
COL6A3-210ENST00000473258 TMEM196Q5HYL7 178 aa7.33□□□□□ -1.24
COL6A3-210ENST00000473258 EXOC3-AS1Q8N2X6 119 aa7.33□□□□□ -1.24
COL6A3-210ENST00000473258 PARP4Q9UKK3 1724 aaKnown RBP7.33□□□□□ -1.24
COL6A3-210ENST00000473258 IGHV3-66A0A0C4DH42 116 aa7.33□□□□□ -1.24
COL6A3-210ENST00000473258 CD24P25063 80 aa7.33□□□□□ -1.24
COL6A3-210ENST00000473258 PAX9P55771 341 aa7.33□□□□□ -1.24
COL6A3-210ENST00000473258 LOXL1Q08397 574 aaPredicted RBP7.33□□□□□ -1.24
COL6A3-210ENST00000473258 SERP2Q8N6R1 65 aa7.33□□□□□ -1.24
COL6A3-210ENST00000473258 CYYR1Q96J86 154 aa7.33□□□□□ -1.24
COL6A3-210ENST00000473258 IMUPQ9GZP8 106 aa7.33□□□□□ -1.24
COL6A3-210ENST00000473258 SCN4AP35499 1836 aa7.33□□□□□ -1.24
COL6A3-210ENST00000473258 MDC1Q14676 2089 aaKnown RBP7.33□□□□□ -1.24
COL6A3-210ENST00000473258 TMEM213A2RRL7 107 aa7.33□□□□□ -1.24
COL6A3-210ENST00000473258 E9PQ18 207 aa7.33□□□□□ -1.24
COL6A3-210ENST00000473258 J3QRE1 110 aa7.33□□□□□ -1.24
COL6A3-210ENST00000473258 PRSS46E5RG02 174 aa7.33□□□□□ -1.24
COL6A3-210ENST00000473258 NBR2O15453 112 aa7.33□□□□□ -1.24
COL6A3-210ENST00000473258 Q86TA4 180 aa7.33□□□□□ -1.24
COL6A3-210ENST00000473258 NRTNQ99748 197 aa7.33□□□□□ -1.24
COL6A3-210ENST00000473258 NDUFC1O43677 76 aa7.32□□□□□ -1.24
COL6A3-210ENST00000473258 NDPQ00604 133 aa7.32□□□□□ -1.24
COL6A3-210ENST00000473258 MRPL51Q4U2R6 128 aaKnown RBP7.32□□□□□ -1.24
COL6A3-210ENST00000473258 C14orf178Q8N769 122 aaPredicted RBP7.32□□□□□ -1.24
COL6A3-210ENST00000473258 IMMP1LQ96LU5 166 aa7.32□□□□□ -1.24
COL6A3-210ENST00000473258 ZNRF1Q8ND25 227 aa7.32□□□□□ -1.24
COL6A3-210ENST00000473258 NRGNQ92686 78 aa7.32□□□□□ -1.24
COL6A3-210ENST00000473258 ICOSQ9Y6W8 199 aa7.32□□□□□ -1.24
COL6A3-210ENST00000473258 TRAV23DV6A0A075B6W5 121 aa7.32□□□□□ -1.24
COL6A3-210ENST00000473258 PMS2P5A8MQ11 134 aa7.32□□□□□ -1.24
COL6A3-210ENST00000473258 WIPF2Q8TF74 440 aaPredicted RBP7.32□□□□□ -1.24
COL6A3-210ENST00000473258 MYO5AQ9Y4I1 1855 aaKnown RBP7.32□□□□□ -1.24
COL6A3-210ENST00000473258 IGKV2-40A0A087WW87 121 aaPredicted RBP7.32□□□□□ -1.24
COL6A3-210ENST00000473258 IGKV2D-40P01614 121 aaPredicted RBP7.32□□□□□ -1.24
COL6A3-210ENST00000473258 LINC00271P0C7V0 271 aa7.32□□□□□ -1.24
COL6A3-210ENST00000473258 ZNF329Q86UD4 541 aa7.32□□□□□ -1.24
COL6A3-210ENST00000473258 CEP250Q9BV73 2442 aa7.32□□□□□ -1.24
COL6A3-210ENST00000473258 WISP1O95388 367 aa7.31□□□□□ -1.24
COL6A3-210ENST00000473258 SIGLEC15Q6ZMC9 328 aa7.31□□□□□ -1.24
COL6A3-210ENST00000473258 LYPD1Q8N2G4 141 aa7.31□□□□□ -1.24
COL6A3-210ENST00000473258 SLC25A45Q8N413 288 aa7.31□□□□□ -1.24
COL6A3-210ENST00000473258 DOCK8Q8NF50 2099 aa7.31□□□□□ -1.24
COL6A3-210ENST00000473258 PREX1Q8TCU6 1659 aa7.31□□□□□ -1.24
COL6A3-210ENST00000473258 DEFB104AQ8WTQ1 72 aa7.31□□□□□ -1.24
COL6A3-210ENST00000473258 SIRPDQ9H106 197 aa7.31□□□□□ -1.24
COL6A3-210ENST00000473258 DOCK7Q96N67 2140 aa7.31□□□□□ -1.24
COL6A3-210ENST00000473258 A0A0A6YYD4 124 aa7.31□□□□□ -1.24
COL6A3-210ENST00000473258 C1orf159Q96HA4 380 aa7.31□□□□□ -1.24
COL6A3-210ENST00000473258 AKAP11Q9UKA4 1901 aa7.31□□□□□ -1.24
COL6A3-210ENST00000473258 CELA3BP08861 270 aa7.31□□□□□ -1.24
COL6A3-210ENST00000473258 COLCA1Q6ZS62 124 aa7.31□□□□□ -1.24
COL6A3-210ENST00000473258 LYPD6Q86Y78 171 aa7.31□□□□□ -1.24
COL6A3-210ENST00000473258 VOPP1Q96AW1 172 aa7.31□□□□□ -1.24
COL6A3-210ENST00000473258 GFRALQ6UXV0 394 aa7.3□□□□□ -1.24
COL6A3-210ENST00000473258 C14orf132Q9NPU4 83 aa7.3□□□□□ -1.24
COL6A3-210ENST00000473258 S4R3C0 116 aa7.3□□□□□ -1.24
COL6A3-210ENST00000473258 A6NED7 52 aa7.3□□□□□ -1.24
COL6A3-210ENST00000473258 CXCL10P02778 98 aa7.3□□□□□ -1.24
COL6A3-210ENST00000473258 MBD3L2Q8NHZ7 208 aaPredicted RBP7.3□□□□□ -1.24
COL6A3-210ENST00000473258 GTSF1Q8WW33 167 aa7.3□□□□□ -1.24
COL6A3-210ENST00000473258 SCARF2Q96GP6 870 aaPredicted RBP7.3□□□□□ -1.24
COL6A3-210ENST00000473258 H0YGX0 51 aa7.3□□□□□ -1.24
COL6A3-210ENST00000473258 IGKV1-5P01602 117 aa7.3□□□□□ -1.24
COL6A3-210ENST00000473258 K7EMI3 77 aa7.3□□□□□ -1.24
COL6A3-210ENST00000473258 ZNF726P1Q15940 193 aa7.3□□□□□ -1.24
COL6A3-210ENST00000473258 PPDPFQ9H3Y8 114 aa7.3□□□□□ -1.24
COL6A3-210ENST00000473258 XGP55808 180 aa7.29□□□□□ -1.24
COL6A3-210ENST00000473258 ERCC8Q13216 396 aa7.29□□□□□ -1.24
COL6A3-210ENST00000473258 TEX36Q5VZQ5 186 aa7.29□□□□□ -1.24
COL6A3-210ENST00000473258 ARRDC1-AS1Q9H2J1 176 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms