RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 TOMM40O96008 361 aa11.96□□□□□ -0.49
PTPRU-205ENST00000460170 CIRBPQ14011 172 aaKnown RBP11.96□□□□□ -0.49
PTPRU-205ENST00000460170 ST20Q9HBF5 79 aa11.96□□□□□ -0.49
PTPRU-205ENST00000460170 IGLV3-9A0A075B6K5 115 aa11.96□□□□□ -0.5
PTPRU-205ENST00000460170 PRR31Q5SQ13 230 aa11.96□□□□□ -0.5
PTPRU-205ENST00000460170 SIGLEC15Q6ZMC9 328 aa11.96□□□□□ -0.5
PTPRU-205ENST00000460170 SRSF8Q9BRL6 282 aaKnown RBP11.96□□□□□ -0.5
PTPRU-205ENST00000460170 NPFFR1Q9GZQ6 430 aa11.96□□□□□ -0.5
PTPRU-205ENST00000460170 Q5PR19 223 aa11.96□□□□□ -0.5
PTPRU-205ENST00000460170 ARL6IP6Q8N6S5 226 aa11.96□□□□□ -0.5
PTPRU-205ENST00000460170 CD7P09564 240 aa11.95□□□□□ -0.5
PTPRU-205ENST00000460170 PRTN3P24158 256 aa11.95□□□□□ -0.5
PTPRU-205ENST00000460170 ZNF134P52741 427 aa11.95□□□□□ -0.5
PTPRU-205ENST00000460170 SRSF1Q07955 248 aaKnown RBP eCLIP11.95□□□□□ -0.5
PTPRU-205ENST00000460170 ZNF833PQ6ZTB9 187 aa11.95□□□□□ -0.5
PTPRU-205ENST00000460170 BEND2Q8NDZ0 799 aa11.95□□□□□ -0.5
PTPRU-205ENST00000460170 LYPD6BQ8NI32 183 aa11.95□□□□□ -0.5
PTPRU-205ENST00000460170 MRPL27Q9P0M9 148 aaKnown RBP11.95□□□□□ -0.5
PTPRU-205ENST00000460170 NDUFA3O95167 84 aa11.95□□□□□ -0.5
PTPRU-205ENST00000460170 CD33P20138 364 aa11.95□□□□□ -0.5
PTPRU-205ENST00000460170 LYZL1Q6UWQ5 148 aa11.95□□□□□ -0.5
PTPRU-205ENST00000460170 TMEM219Q86XT9 240 aa11.95□□□□□ -0.5
PTPRU-205ENST00000460170 OVOL1O14753 267 aa11.95□□□□□ -0.5
PTPRU-205ENST00000460170 C3orf79P0CE67 100 aa11.95□□□□□ -0.5
PTPRU-205ENST00000460170 NUTF2P61970 127 aaKnown RBP11.95□□□□□ -0.5
PTPRU-205ENST00000460170 PSG3Q16557 428 aa11.95□□□□□ -0.5
PTPRU-205ENST00000460170 FGF23Q9GZV9 251 aaPredicted RBP11.94□□□□□ -0.5
PTPRU-205ENST00000460170 EVI2AP22794 236 aa11.94□□□□□ -0.5
PTPRU-205ENST00000460170 DUX3Q96PT4 197 aa11.94□□□□□ -0.5
PTPRU-205ENST00000460170 MALRD1Q5VYJ5 2156 aa11.94□□□□□ -0.5
PTPRU-205ENST00000460170 PRSS22Q9GZN4 317 aa11.94□□□□□ -0.5
PTPRU-205ENST00000460170 ZNF256Q9Y2P7 627 aaPredicted RBP11.94□□□□□ -0.5
PTPRU-205ENST00000460170 D6R8Y8 96 aa11.94□□□□□ -0.5
PTPRU-205ENST00000460170 ZNF664Q8N3J9 261 aa11.94□□□□□ -0.5
PTPRU-205ENST00000460170 FAM215AQ9Y5M1 114 aa11.94□□□□□ -0.5
PTPRU-205ENST00000460170 KRTAP27-1Q3LI81 207 aa11.93□□□□□ -0.5
PTPRU-205ENST00000460170 PRR30Q53SZ7 412 aaPredicted RBP11.93□□□□□ -0.5
PTPRU-205ENST00000460170 TEX36Q5VZQ5 186 aa11.93□□□□□ -0.5
PTPRU-205ENST00000460170 DPM2O94777 84 aa11.93□□□□□ -0.5
PTPRU-205ENST00000460170 LCN12Q6JVE5 192 aa11.93□□□□□ -0.5
PTPRU-205ENST00000460170 OR4X2Q8NGF9 303 aa11.93□□□□□ -0.5
PTPRU-205ENST00000460170 ITLN2Q8WWU7 325 aaPredicted RBP11.93□□□□□ -0.5
PTPRU-205ENST00000460170 CYYR1Q96J86 154 aa11.93□□□□□ -0.5
PTPRU-205ENST00000460170 ZFHX2Q9C0A1 2572 aaPredicted RBP11.93□□□□□ -0.5
PTPRU-205ENST00000460170 NOTCH3Q9UM47 2321 aa11.93□□□□□ -0.5
PTPRU-205ENST00000460170 SHANK2-AS3Q9BTD1 123 aa11.93□□□□□ -0.5
PTPRU-205ENST00000460170 ZNF106Q9H2Y7 1883 aaKnown RBP11.93□□□□□ -0.5
PTPRU-205ENST00000460170 MRPL16Q9NX20 251 aaKnown RBP11.93□□□□□ -0.5
PTPRU-205ENST00000460170 LOXP28300 417 aaPredicted RBP11.92□□□□□ -0.5
PTPRU-205ENST00000460170 ORMDL2Q53FV1 153 aa11.92□□□□□ -0.5
PTPRU-205ENST00000460170 Q86TA4 180 aa11.92□□□□□ -0.5
PTPRU-205ENST00000460170 MS4A6AQ9H2W1 248 aa11.92□□□□□ -0.5
PTPRU-205ENST00000460170 Q8TAT8 98 aa11.92□□□□□ -0.5
PTPRU-205ENST00000460170 SMAD7O15105 426 aaKnown RBP11.92□□□□□ -0.5
PTPRU-205ENST00000460170 MMP23AO75900 390 aa11.92□□□□□ -0.5
PTPRU-205ENST00000460170 NCR2O95944 276 aa11.92□□□□□ -0.5
PTPRU-205ENST00000460170 TYMSP04818 313 aa11.92□□□□□ -0.5
PTPRU-205ENST00000460170 SH2D1AO60880 128 aa11.92□□□□□ -0.5
PTPRU-205ENST00000460170 IGHV2-5P01817 119 aa11.92□□□□□ -0.5
PTPRU-205ENST00000460170 ZNF138P52744 262 aa11.92□□□□□ -0.5
PTPRU-205ENST00000460170 Q0VG73 95 aa11.92□□□□□ -0.5
PTPRU-205ENST00000460170 SPCS1Q9Y6A9 102 aa11.92□□□□□ -0.5
PTPRU-205ENST00000460170 COL4A4P53420 1690 aaPredicted RBP11.92□□□□□ -0.5
PTPRU-205ENST00000460170 K7ENP7 123 aa11.91□□□□□ -0.5
PTPRU-205ENST00000460170 MEIG1Q5JSS6 88 aa11.91□□□□□ -0.5
PTPRU-205ENST00000460170 LINC00311Q8N616 119 aa11.91□□□□□ -0.5
PTPRU-205ENST00000460170 C2orf16Q68DN1 1984 aa11.91□□□□□ -0.5
PTPRU-205ENST00000460170 DUSP14O95147 198 aaKnown RBP11.91□□□□□ -0.5
PTPRU-205ENST00000460170 ZNF562Q6V9R5 426 aa11.91□□□□□ -0.5
PTPRU-205ENST00000460170 C11orf53Q8IXP5 236 aa11.91□□□□□ -0.5
PTPRU-205ENST00000460170 BDP1A6H8Y1 2624 aa11.91□□□□□ -0.5
PTPRU-205ENST00000460170 SUMO2P61956 95 aaKnown RBP11.91□□□□□ -0.5
PTPRU-205ENST00000460170 COPS9Q8WXC6 57 aa11.91□□□□□ -0.5
PTPRU-205ENST00000460170 C5orf30Q96GV9 206 aa11.91□□□□□ -0.5
PTPRU-205ENST00000460170 PEMTQ9UBM1 199 aa11.91□□□□□ -0.5
PTPRU-205ENST00000460170 LTBP2Q14767 1821 aa11.91□□□□□ -0.5
PTPRU-205ENST00000460170 ZGRF1Q86YA3 2104 aa11.91□□□□□ -0.5
PTPRU-205ENST00000460170 TRBV7-1A0A0A6YYK4 115 aa11.9□□□□□ -0.5
PTPRU-205ENST00000460170 PSMB11A5LHX3 300 aa11.9□□□□□ -0.5
PTPRU-205ENST00000460170 H3BUT2 72 aa11.9□□□□□ -0.5
PTPRU-205ENST00000460170 CNTFRP26992 372 aa11.9□□□□□ -0.5
PTPRU-205ENST00000460170 WT1-ASQ06250 92 aa11.9□□□□□ -0.5
PTPRU-205ENST00000460170 LINC01587Q99440 93 aa11.9□□□□□ -0.5
PTPRU-205ENST00000460170 CYSLTR1Q9Y271 337 aa11.9□□□□□ -0.5
PTPRU-205ENST00000460170 GGTLC3B5MD39 225 aa11.9□□□□□ -0.5
PTPRU-205ENST00000460170 PDE6HQ13956 83 aa11.9□□□□□ -0.5
PTPRU-205ENST00000460170 LDLRAD2Q5SZI1 272 aa11.9□□□□□ -0.5
PTPRU-205ENST00000460170 C9orf139Q6ZV77 190 aa11.9□□□□□ -0.5
PTPRU-205ENST00000460170 PIP4P1Q86T03 277 aa11.9□□□□□ -0.5
PTPRU-205ENST00000460170 A0A1B0GV72 72 aa11.9□□□□□ -0.51
PTPRU-205ENST00000460170 POU2AF1Q16633 256 aa11.9□□□□□ -0.51
PTPRU-205ENST00000460170 BRD3OSQ6XYD6 125 aa11.9□□□□□ -0.51
PTPRU-205ENST00000460170 MSRB2Q9Y3D2 182 aa11.9□□□□□ -0.51
PTPRU-205ENST00000460170 SRD5A1P18405 259 aa11.89□□□□□ -0.51
PTPRU-205ENST00000460170 A0A1B0GUS0 222 aa11.89□□□□□ -0.51
PTPRU-205ENST00000460170 IGKCP01834 107 aa11.89□□□□□ -0.51
PTPRU-205ENST00000460170 TTC32Q5I0X7 151 aa11.89□□□□□ -0.51
PTPRU-205ENST00000460170 IGFL4Q6B9Z1 124 aa11.89□□□□□ -0.51
PTPRU-205ENST00000460170 GFRA4Q9GZZ7 299 aa11.89□□□□□ -0.51
PTPRU-205ENST00000460170 H3BUX3 64 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 85.6 ms