RNA–Protein interactions for RNA: ENST00000430976.5

PTPN4-203, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 4,154 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-203ENST00000430976 OR52N5Q8NH56 324 aa4.28□□□□□ -1.72
PTPN4-203ENST00000430976 GTSF1Q8WW33 167 aa4.28□□□□□ -1.72
PTPN4-203ENST00000430976 PYGO2Q9BRQ0 406 aa4.28□□□□□ -1.72
PTPN4-203ENST00000430976 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.28□□□□□ -1.721e-9■■■■■ 37.8
PTPN4-203ENST00000430976 LAMB2P55268 1798 aa4.28□□□□□ -1.72
PTPN4-203ENST00000430976 C12orf77C9JDV5 145 aa4.28□□□□□ -1.72
PTPN4-203ENST00000430976 M0R381 172 aa4.28□□□□□ -1.72
PTPN4-203ENST00000430976 CLDN14O95500 239 aa4.28□□□□□ -1.72
PTPN4-203ENST00000430976 COX5AP20674 150 aa4.28□□□□□ -1.72
PTPN4-203ENST00000430976 RPL18AQ02543 176 aaKnown RBP4.28□□□□□ -1.72
PTPN4-203ENST00000430976 IGFBP7Q16270 282 aa4.28□□□□□ -1.72
PTPN4-203ENST00000430976 LGALS9CQ6DKI2 356 aa4.28□□□□□ -1.72
PTPN4-203ENST00000430976 PFN4Q8NHR9 129 aa4.28□□□□□ -1.72
PTPN4-203ENST00000430976 C2orf16Q68DN1 1984 aa4.28□□□□□ -1.72
PTPN4-203ENST00000430976 ZNF106Q9H2Y7 1883 aaKnown RBP4.28□□□□□ -1.72
PTPN4-203ENST00000430976 RTTNQ86VV8 2226 aa4.28□□□□□ -1.72
PTPN4-203ENST00000430976 CHD8Q9HCK8 2581 aa4.28□□□□□ -1.72
PTPN4-203ENST00000430976 TNS2Q63HR2 1409 aa4.28□□□□□ -1.72
PTPN4-203ENST00000430976 FAM90A26D6RGX4 464 aa4.28□□□□□ -1.73
PTPN4-203ENST00000430976 M0R2P5 195 aa4.28□□□□□ -1.73
PTPN4-203ENST00000430976 COX7A2P2O60397 106 aa4.28□□□□□ -1.73
PTPN4-203ENST00000430976 PDCD6O75340 191 aa4.28□□□□□ -1.73
PTPN4-203ENST00000430976 IGHG1P01857 330 aa4.28□□□□□ -1.73
PTPN4-203ENST00000430976 NANOS2P60321 138 aaKnown RBP4.28□□□□□ -1.73
PTPN4-203ENST00000430976 LAGE3Q14657 143 aa4.28□□□□□ -1.73
PTPN4-203ENST00000430976 MLANAQ16655 118 aa4.28□□□□□ -1.73
PTPN4-203ENST00000430976 ODF3L1Q8IXM7 274 aa4.28□□□□□ -1.73
PTPN4-203ENST00000430976 PDFQ9HBH1 243 aa4.28□□□□□ -1.73
PTPN4-203ENST00000430976 AHCTF1Q8WYP5 2266 aa4.28□□□□□ -1.73
PTPN4-203ENST00000430976 ZNF407Q9C0G0 2248 aa4.28□□□□□ -1.73
PTPN4-203ENST00000430976 NFAT5O94916 1531 aa4.27□□□□□ -1.73
PTPN4-203ENST00000430976 SCN4AP35499 1836 aa4.27□□□□□ -1.73
PTPN4-203ENST00000430976 FREM1Q5H8C1 2179 aa4.27□□□□□ -1.73
PTPN4-203ENST00000430976 INTS1Q8N201 2190 aaKnown RBP4.27□□□□□ -1.73
PTPN4-203ENST00000430976 TRAV1-2A0A0B4J238 106 aa4.27□□□□□ -1.73
PTPN4-203ENST00000430976 LGALS9O00182 355 aa4.27□□□□□ -1.73
PTPN4-203ENST00000430976 FFAR1O14842 300 aa4.27□□□□□ -1.73
PTPN4-203ENST00000430976 NUP35Q8NFH5 326 aa4.27□□□□□ -1.73
PTPN4-203ENST00000430976 SLC25A2Q9BXI2 301 aa4.27□□□□□ -1.73
PTPN4-203ENST00000430976 MIA3Q5JRA6 1907 aa4.27□□□□□ -1.73
PTPN4-203ENST00000430976 IGHV1OR21-1A0A087WYE8 117 aa4.27□□□□□ -1.73
PTPN4-203ENST00000430976 GFRA3O60609 400 aa4.27□□□□□ -1.73
PTPN4-203ENST00000430976 GYPEP15421 78 aa4.27□□□□□ -1.73
PTPN4-203ENST00000430976 SLIT2O94813 1529 aa4.27□□□□□ -1.73
PTPN4-203ENST00000430976 A0A1B0GTH9 108 aa4.27□□□□□ -1.73
PTPN4-203ENST00000430976 SLC25A20O43772 301 aa4.27□□□□□ -1.73
PTPN4-203ENST00000430976 NCR2O95944 276 aa4.27□□□□□ -1.73
PTPN4-203ENST00000430976 GCHFRP30047 84 aa4.27□□□□□ -1.73
PTPN4-203ENST00000430976 CKS2P33552 79 aa4.27□□□□□ -1.73
PTPN4-203ENST00000430976 C1orf140Q5VVS0 124 aa4.27□□□□□ -1.73
PTPN4-203ENST00000430976 PRNTQ86SH4 94 aa4.27□□□□□ -1.73
PTPN4-203ENST00000430976 LINC01555Q8NAE3 123 aa4.27□□□□□ -1.73
PTPN4-203ENST00000430976 CMC2Q9NRP2 79 aa4.27□□□□□ -1.73
PTPN4-203ENST00000430976 SERP1Q9Y6X1 66 aa4.27□□□□□ -1.73
PTPN4-203ENST00000430976 SLX4Q8IY92 1834 aa4.26□□□□□ -1.73
PTPN4-203ENST00000430976 ANKRD36CQ5JPF3 1778 aa4.26□□□□□ -1.73
PTPN4-203ENST00000430976 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.26□□□□□ -1.73
PTPN4-203ENST00000430976 TRAV17A0A0B4J275 112 aa4.26□□□□□ -1.73
PTPN4-203ENST00000430976 MYCNOSP40205 109 aa4.26□□□□□ -1.73
PTPN4-203ENST00000430976 HIST1H4AP62805 103 aaKnown RBP4.26□□□□□ -1.73
PTPN4-203ENST00000430976 BEAN1Q3B7T3 259 aa4.26□□□□□ -1.73
PTPN4-203ENST00000430976 FHL5Q5TD97 284 aa4.26□□□□□ -1.73
PTPN4-203ENST00000430976 C20orf197Q8N268 126 aa4.26□□□□□ -1.73
PTPN4-203ENST00000430976 RFLNBQ8N5W9 214 aa4.26□□□□□ -1.73
PTPN4-203ENST00000430976 FGF13Q92913 245 aa4.26□□□□□ -1.73
PTPN4-203ENST00000430976 PAPPAQ13219 1627 aa4.26□□□□□ -1.73
PTPN4-203ENST00000430976 BRWD1Q9NSI6 2320 aa4.26□□□□□ -1.73
PTPN4-203ENST00000430976 ARHGAP32A7KAX9 2087 aa4.26□□□□□ -1.73
PTPN4-203ENST00000430976 TCRBV5S1A1TA0A578 114 aa4.26□□□□□ -1.73
PTPN4-203ENST00000430976 NDUFB3O43676 98 aa4.26□□□□□ -1.73
PTPN4-203ENST00000430976 IGHV4-39P01824 125 aa4.26□□□□□ -1.73
PTPN4-203ENST00000430976 LINC00173Q6ZV60 143 aa4.26□□□□□ -1.73
PTPN4-203ENST00000430976 PARP4Q9UKK3 1724 aaKnown RBP4.26□□□□□ -1.73
PTPN4-203ENST00000430976 ALPK3Q96L96 1907 aa4.26□□□□□ -1.73
PTPN4-203ENST00000430976 TRBV5-3A0A0A0MS03 114 aa4.26□□□□□ -1.73
PTPN4-203ENST00000430976 ETV2O00321 342 aaPredicted RBP4.26□□□□□ -1.73
PTPN4-203ENST00000430976 NCBP2P52298 156 aaKnown RBP eCLIP4.26□□□□□ -1.73
PTPN4-203ENST00000430976 CRYBA2P53672 197 aa4.26□□□□□ -1.73
PTPN4-203ENST00000430976 TMEM170BQ5T4T1 132 aa4.26□□□□□ -1.73
PTPN4-203ENST00000430976 CEMP1Q6PRD7 247 aaPredicted RBP4.26□□□□□ -1.73
PTPN4-203ENST00000430976 COX8CQ7Z4L0 72 aa4.26□□□□□ -1.73
PTPN4-203ENST00000430976 ZNF799Q96GE5 643 aa4.26□□□□□ -1.73
PTPN4-203ENST00000430976 SPANXDQ9BXN6 97 aa4.26□□□□□ -1.73
PTPN4-203ENST00000430976 SHANK3Q9BYB0 1731 aa4.26□□□□□ -1.73
PTPN4-203ENST00000430976 DPH3P1Q9H4G8 78 aa4.26□□□□□ -1.73
PTPN4-203ENST00000430976 SCRT2Q9NQ03 307 aa4.26□□□□□ -1.73
PTPN4-203ENST00000430976 FREM3P0C091 2139 aa4.25□□□□□ -1.73
PTPN4-203ENST00000430976 EPPINO95925 133 aa4.25□□□□□ -1.73
PTPN4-203ENST00000430976 RPS27P42677 84 aaKnown RBP4.25□□□□□ -1.73
PTPN4-203ENST00000430976 C9orf57Q5W0N0 161 aa4.25□□□□□ -1.73
PTPN4-203ENST00000430976 CHAC1Q9BUX1 264 aa4.25□□□□□ -1.73
PTPN4-203ENST00000430976 TOPAZ1Q8N9V7 1692 aa4.25□□□□□ -1.73
PTPN4-203ENST00000430976 LMO7Q8WWI1 1683 aa4.25□□□□□ -1.73
PTPN4-203ENST00000430976 SIPA1L1O43166 1804 aa4.25□□□□□ -1.73
PTPN4-203ENST00000430976 DLC1Q96QB1 1528 aa4.25□□□□□ -1.73
PTPN4-203ENST00000430976 IGKV1D-8A0A087WSZ0 117 aa4.25□□□□□ -1.73
PTPN4-203ENST00000430976 ZNF672Q499Z4 452 aaPredicted RBP4.25□□□□□ -1.73
PTPN4-203ENST00000430976 LINC01356Q8N9X3 169 aa4.25□□□□□ -1.73
PTPN4-203ENST00000430976 UBE2WQ96B02 151 aa4.25□□□□□ -1.73
PTPN4-203ENST00000430976 SCRT1Q9BWW7 348 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms