RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 GATCO43716 136 aaKnown RBP11.7□□□□□ -0.54
USP4-203ENST00000415188 NBEAP1P0C6P0 100 aa11.7□□□□□ -0.54
USP4-203ENST00000415188 GP9P14770 177 aa11.7□□□□□ -0.54
USP4-203ENST00000415188 CRISP2P16562 243 aa11.7□□□□□ -0.54
USP4-203ENST00000415188 IER3P46695 156 aa11.7□□□□□ -0.54
USP4-203ENST00000415188 DLX1P56177 255 aa11.7□□□□□ -0.54
USP4-203ENST00000415188 UBE2G1P62253 170 aa11.7□□□□□ -0.54
USP4-203ENST00000415188 RANP62826 216 aaKnown RBP11.7□□□□□ -0.54
USP4-203ENST00000415188 MMDQ15546 238 aa11.7□□□□□ -0.54
USP4-203ENST00000415188 WIPF2Q8TF74 440 aaPredicted RBP11.7□□□□□ -0.54
USP4-203ENST00000415188 GRAMD2BQ96HH9 432 aa11.7□□□□□ -0.54
USP4-203ENST00000415188 RBM14Q96PK6 669 aaKnown RBP11.7□□□□□ -0.54
USP4-203ENST00000415188 LPAR2Q9HBW0 351 aa11.7□□□□□ -0.54
USP4-203ENST00000415188 RNF24Q9Y225 148 aa11.7□□□□□ -0.54
USP4-203ENST00000415188 CNIH1O95406 144 aa11.69□□□□□ -0.54
USP4-203ENST00000415188 SLC25A5P05141 298 aaKnown RBP11.69□□□□□ -0.54
USP4-203ENST00000415188 TPPP2P59282 170 aa11.69□□□□□ -0.54
USP4-203ENST00000415188 IQCJQ1A5X6 159 aa11.69□□□□□ -0.54
USP4-203ENST00000415188 MINOS1Q5TGZ0 78 aa11.69□□□□□ -0.54
USP4-203ENST00000415188 S100A7AQ86SG5 101 aa11.69□□□□□ -0.54
USP4-203ENST00000415188 CMTM2Q8TAZ6 248 aa11.69□□□□□ -0.54
USP4-203ENST00000415188 FMC1Q96HJ9 113 aa11.69□□□□□ -0.54
USP4-203ENST00000415188 ATG101Q9BSB4 218 aa11.69□□□□□ -0.54
USP4-203ENST00000415188 WNT10AQ9GZT5 417 aa11.69□□□□□ -0.54
USP4-203ENST00000415188 MINOS1-NBL1R4GNA1 71 aa11.69□□□□□ -0.54
USP4-203ENST00000415188 PLXNB1O43157 2135 aa11.69□□□□□ -0.54
USP4-203ENST00000415188 HIST1H1EP10412 219 aaKnown RBP11.68□□□□□ -0.54
USP4-203ENST00000415188 ARF6P62330 175 aa11.68□□□□□ -0.54
USP4-203ENST00000415188 TMEM136Q6ZRR5 245 aa11.68□□□□□ -0.54
USP4-203ENST00000415188 TMEM68Q96MH6 324 aa11.68□□□□□ -0.54
USP4-203ENST00000415188 ZNF48Q96MX3 618 aaPredicted RBP11.68□□□□□ -0.54
USP4-203ENST00000415188 NOL4LQ96MY1 436 aaPredicted RBP11.68□□□□□ -0.54
USP4-203ENST00000415188 RASL11BQ9BPW5 248 aa11.68□□□□□ -0.54
USP4-203ENST00000415188 OTORQ9NRC9 128 aa11.68□□□□□ -0.54
USP4-203ENST00000415188 SERTAD4Q9NUC0 356 aa11.68□□□□□ -0.54
USP4-203ENST00000415188 ZNF492Q9P255 531 aa11.68□□□□□ -0.54
USP4-203ENST00000415188 ANK2Q01484 3957 aa11.68□□□□□ -0.54
USP4-203ENST00000415188 TRAV30A0A087WSZ9 112 aa11.67□□□□□ -0.54
USP4-203ENST00000415188 TRAV20A0A0B4J274 112 aa11.67□□□□□ -0.54
USP4-203ENST00000415188 B4DSR2 109 aa11.67□□□□□ -0.54
USP4-203ENST00000415188 TOMM40O96008 361 aa11.67□□□□□ -0.54
USP4-203ENST00000415188 LMO4P61968 165 aa11.67□□□□□ -0.54
USP4-203ENST00000415188 FXYD3Q14802 87 aa11.67□□□□□ -0.54
USP4-203ENST00000415188 USF2Q15853 346 aaPredicted RBP11.67□□□□□ -0.54
USP4-203ENST00000415188 C5orf64Q2M2E5 130 aa11.67□□□□□ -0.54
USP4-203ENST00000415188 GPR82Q96P67 336 aa11.67□□□□□ -0.54
USP4-203ENST00000415188 HIF1ANQ9NWT6 349 aa11.67□□□□□ -0.54
USP4-203ENST00000415188 TRBV6-1A0A0K0K1D8 114 aa11.66□□□□□ -0.54
USP4-203ENST00000415188 PGPA6NDG6 321 aa11.66□□□□□ -0.54
USP4-203ENST00000415188 NPIPB5A8MRT5 1133 aa11.66□□□□□ -0.54
USP4-203ENST00000415188 PSG1P11464 419 aa11.66□□□□□ -0.54
USP4-203ENST00000415188 LYZP61626 148 aa11.66□□□□□ -0.54
USP4-203ENST00000415188 DEFA6Q01524 100 aa11.66□□□□□ -0.54
USP4-203ENST00000415188 PRB3Q04118 309 aaPredicted RBP11.66□□□□□ -0.54
USP4-203ENST00000415188 CT83Q5H943 113 aa11.66□□□□□ -0.54
USP4-203ENST00000415188 OR10J3Q5JRS4 329 aa11.66□□□□□ -0.54
USP4-203ENST00000415188 LDLRAD2Q5SZI1 272 aa11.66□□□□□ -0.54
USP4-203ENST00000415188 RUSC1-AS1Q66K80 236 aa11.66□□□□□ -0.54
USP4-203ENST00000415188 TMEM256Q8N2U0 113 aa11.66□□□□□ -0.54
USP4-203ENST00000415188 C7orf69Q9H7B7 122 aa11.66□□□□□ -0.54
USP4-203ENST00000415188 ZNF331Q9NQX6 463 aaPredicted RBP11.66□□□□□ -0.54
USP4-203ENST00000415188 MRPL27Q9P0M9 148 aaKnown RBP11.66□□□□□ -0.54
USP4-203ENST00000415188 NAT8BQ9UHF3 227 aa11.66□□□□□ -0.54
USP4-203ENST00000415188 K7EIM0 57 aa11.65□□□□□ -0.54
USP4-203ENST00000415188 MSMBP08118 114 aa11.65□□□□□ -0.54
USP4-203ENST00000415188 RD3LP0DJH9 198 aa11.65□□□□□ -0.54
USP4-203ENST00000415188 RAB4BP61018 213 aa11.65□□□□□ -0.54
USP4-203ENST00000415188 EBI3Q14213 229 aa11.65□□□□□ -0.54
USP4-203ENST00000415188 ZNF600Q6ZNG1 722 aa11.65□□□□□ -0.54
USP4-203ENST00000415188 C19orf35Q6ZS72 473 aa11.65□□□□□ -0.54
USP4-203ENST00000415188 ATP5L2Q7Z4Y8 100 aa11.65□□□□□ -0.54
USP4-203ENST00000415188 BLNKQ8WV28 456 aa11.65□□□□□ -0.54
USP4-203ENST00000415188 MS4A10Q96PG2 267 aa11.65□□□□□ -0.54
USP4-203ENST00000415188 SLC25A39Q9BZJ4 359 aaPredicted RBP11.65□□□□□ -0.54
USP4-203ENST00000415188 Q9H3A6 140 aa11.65□□□□□ -0.54
USP4-203ENST00000415188 IGKV1-17P01599 117 aa11.64□□□□□ -0.55
USP4-203ENST00000415188 APELAP0DMC3 54 aa11.64□□□□□ -0.55
USP4-203ENST00000415188 DDTP30046 118 aa11.64□□□□□ -0.55
USP4-203ENST00000415188 C9orf152Q5JTZ5 239 aa11.64□□□□□ -0.55
USP4-203ENST00000415188 FAM209BQ5JX69 171 aa11.64□□□□□ -0.55
USP4-203ENST00000415188 REC114Q7Z4M0 266 aa11.64□□□□□ -0.55
USP4-203ENST00000415188 VMO1Q7Z5L0 202 aa11.64□□□□□ -0.55
USP4-203ENST00000415188 BAGE3Q86Y29 109 aa11.64□□□□□ -0.55
USP4-203ENST00000415188 LYPD1Q8N2G4 141 aa11.64□□□□□ -0.55
USP4-203ENST00000415188 NUDT10Q8NFP7 164 aa11.64□□□□□ -0.55
USP4-203ENST00000415188 TSKUQ8WUA8 353 aa11.64□□□□□ -0.55
USP4-203ENST00000415188 NUDT11Q96G61 164 aa11.64□□□□□ -0.55
USP4-203ENST00000415188 LINC00479Q96M42 142 aa11.64□□□□□ -0.55
USP4-203ENST00000415188 SHANK2-AS3Q9BTD1 123 aa11.64□□□□□ -0.55
USP4-203ENST00000415188 MLST8Q9BVC4 326 aa11.64□□□□□ -0.55
USP4-203ENST00000415188 TP53TG3Q9ULZ0 132 aa11.64□□□□□ -0.55
USP4-203ENST00000415188 TBL2Q9Y4P3 447 aaKnown RBP11.64□□□□□ -0.55
USP4-203ENST00000415188 SOX21Q9Y651 276 aaPredicted RBP11.64□□□□□ -0.55
USP4-203ENST00000415188 IGHV3-21A0A0B4J1V1 117 aa11.63□□□□□ -0.55
USP4-203ENST00000415188 TRAV34A0A0B4J273 112 aa11.63□□□□□ -0.55
USP4-203ENST00000415188 GRIFINA4D1Z8 144 aa11.63□□□□□ -0.55
USP4-203ENST00000415188 H3BRN7 92 aa11.63□□□□□ -0.55
USP4-203ENST00000415188 TCF21O43680 179 aa11.63□□□□□ -0.55
USP4-203ENST00000415188 SCGB2A1O75556 95 aa11.63□□□□□ -0.55
USP4-203ENST00000415188 LTAP01374 205 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 91.7 ms