RNA–Protein interactions for RNA: ENST00000310441.11

HCFC1-201, Transcript of host cell factor C1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HCFC1, Length 8,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-201ENST00000310441 MRPL14Q6P1L8 145 aaKnown RBP12.83□□□□□ -0.36
HCFC1-201ENST00000310441 LY6G5BQ8NDX9 201 aa12.83□□□□□ -0.36
HCFC1-201ENST00000310441 OCC1Q8TAD7 63 aa12.83□□□□□ -0.36
HCFC1-201ENST00000310441 IMMP1LQ96LU5 166 aa12.83□□□□□ -0.36
HCFC1-201ENST00000310441 S4R3C0 116 aa12.83□□□□□ -0.36
HCFC1-201ENST00000310441 SRD5A1P18405 259 aa12.83□□□□□ -0.36
HCFC1-201ENST00000310441 HIST3H2BBQ8N257 126 aa12.83□□□□□ -0.36
HCFC1-201ENST00000310441 SRSF2Q01130 221 aaKnown RBP12.82□□□□□ -0.36
HCFC1-201ENST00000310441 C9orf153Q5TBE3 101 aa12.82□□□□□ -0.36
HCFC1-201ENST00000310441 IL17RELQ6ZVW7 336 aa12.82□□□□□ -0.36
HCFC1-201ENST00000310441 C1QL2Q7Z5L3 287 aa12.82□□□□□ -0.36
HCFC1-201ENST00000310441 DSCAMO60469 2012 aa12.82□□□□□ -0.36
HCFC1-201ENST00000310441 IGHV3-64A0A075B6Q5 118 aa12.82□□□□□ -0.36
HCFC1-201ENST00000310441 THBDP07204 575 aa12.82□□□□□ -0.36
HCFC1-201ENST00000310441 C20orf204Q6ZNR8 217 aa12.82□□□□□ -0.36
HCFC1-201ENST00000310441 IL18BPO95998 194 aa12.81□□□□□ -0.36
HCFC1-201ENST00000310441 RNF126Q9BV68 326 aa12.81□□□□□ -0.36
HCFC1-201ENST00000310441 NPIPB5A8MRT5 1133 aa12.81□□□□□ -0.36
HCFC1-201ENST00000310441 IGHV3-11P01762 117 aa12.81□□□□□ -0.36
HCFC1-201ENST00000310441 IGHV1-2P23083 117 aa12.81□□□□□ -0.36
HCFC1-201ENST00000310441 KIR3DS1Q14943 382 aa12.81□□□□□ -0.36
HCFC1-201ENST00000310441 DSCR8Q96T75 97 aa12.81□□□□□ -0.36
HCFC1-201ENST00000310441 GFI1BQ5VTD9 330 aa12.81□□□□□ -0.36
HCFC1-201ENST00000310441 SYS1-DBNDD2H3BUS1 97 aa12.81□□□□□ -0.36
HCFC1-201ENST00000310441 PRTN3P24158 256 aa12.81□□□□□ -0.36
HCFC1-201ENST00000310441 UTF1Q5T230 341 aa12.81□□□□□ -0.36
HCFC1-201ENST00000310441 LOC101059948A0A1B0GTJ6 334 aa12.81□□□□□ -0.36
HCFC1-201ENST00000310441 PSG3Q16557 428 aa12.81□□□□□ -0.36
HCFC1-201ENST00000310441 TMEM141Q96I45 108 aa12.81□□□□□ -0.36
HCFC1-201ENST00000310441 MUC4Q99102 2169 aa12.81□□□□□ -0.36
HCFC1-201ENST00000310441 SRRM4A7MD48 611 aaKnown RBP12.81□□□□□ -0.36
HCFC1-201ENST00000310441 NEUROG3Q9Y4Z2 214 aa12.81□□□□□ -0.36
HCFC1-201ENST00000310441 THSD7AQ9UPZ6 1657 aa12.81□□□□□ -0.36
HCFC1-201ENST00000310441 TMEM258P61165 79 aa12.8□□□□□ -0.36
HCFC1-201ENST00000310441 C19orf48Q6RUI8 117 aa12.8□□□□□ -0.36
HCFC1-201ENST00000310441 TRGV1A0A0A0MS02 117 aa12.8□□□□□ -0.36
HCFC1-201ENST00000310441 RNF114Q9Y508 228 aa12.8□□□□□ -0.36
HCFC1-201ENST00000310441 PRRC2AP48634 2157 aaKnown RBP12.8□□□□□ -0.36
HCFC1-201ENST00000310441 PTPRQQ9UMZ3 2332 aa12.8□□□□□ -0.36
HCFC1-201ENST00000310441 PMVKQ15126 192 aa12.8□□□□□ -0.36
HCFC1-201ENST00000310441 SPATA31B1PQ5VZV4 182 aa12.8□□□□□ -0.36
HCFC1-201ENST00000310441 PRIMA1Q86XR5 153 aa12.8□□□□□ -0.36
HCFC1-201ENST00000310441 M0R1W7 72 aa12.79□□□□□ -0.36
HCFC1-201ENST00000310441 FGF16O43320 207 aa12.79□□□□□ -0.36
HCFC1-201ENST00000310441 AMBPP02760 352 aa12.79□□□□□ -0.36
HCFC1-201ENST00000310441 RHODO00212 210 aa12.79□□□□□ -0.36
HCFC1-201ENST00000310441 LINC00114Q6XXX2 140 aa12.79□□□□□ -0.36
HCFC1-201ENST00000310441 IGLV3-32A0A0A0MS00 114 aa12.79□□□□□ -0.36
HCFC1-201ENST00000310441 PYYP10082 97 aa12.79□□□□□ -0.36
HCFC1-201ENST00000310441 RFNGQ9Y644 331 aa12.79□□□□□ -0.36
HCFC1-201ENST00000310441 CSRP2Q16527 193 aa12.79□□□□□ -0.36
HCFC1-201ENST00000310441 TPTE2P1Q5T6R2 138 aa12.79□□□□□ -0.36
HCFC1-201ENST00000310441 RNF166Q96A37 237 aaPredicted RBP12.79□□□□□ -0.36
HCFC1-201ENST00000310441 SAP30O75446 220 aa12.78□□□□□ -0.36
HCFC1-201ENST00000310441 F8W1H4 67 aa12.78□□□□□ -0.36
HCFC1-201ENST00000310441 ID3Q02535 119 aa12.78□□□□□ -0.36
HCFC1-201ENST00000310441 ZNF876PQ49A33 203 aa12.78□□□□□ -0.36
HCFC1-201ENST00000310441 TRPT1Q86TN4 253 aaKnown RBP12.78□□□□□ -0.36
HCFC1-201ENST00000310441 CSTL1Q9H114 145 aa12.78□□□□□ -0.36
HCFC1-201ENST00000310441 OTOGLQ3ZCN5 2332 aa12.78□□□□□ -0.36
HCFC1-201ENST00000310441 EREGO14944 169 aa12.78□□□□□ -0.36
HCFC1-201ENST00000310441 TRAV8-3A0A0A6YYJ7 113 aa12.78□□□□□ -0.36
HCFC1-201ENST00000310441 A0A1B0GWJ7 208 aa12.78□□□□□ -0.36
HCFC1-201ENST00000310441 GATA2P23769 480 aaPredicted RBP12.78□□□□□ -0.36
HCFC1-201ENST00000310441 NKAPP1Q8N9T2 125 aa12.78□□□□□ -0.36
HCFC1-201ENST00000310441 PMS2P5A8MQ11 134 aa12.78□□□□□ -0.36
HCFC1-201ENST00000310441 ADAMTS9Q9P2N4 1935 aa12.78□□□□□ -0.36
HCFC1-201ENST00000310441 NUP35Q8NFH5 326 aa12.78□□□□□ -0.36
HCFC1-201ENST00000310441 TBX6O95947 436 aaPredicted RBP12.77□□□□□ -0.36
HCFC1-201ENST00000310441 TREML4Q6UXN2 200 aa12.77□□□□□ -0.36
HCFC1-201ENST00000310441 PSG1P11464 419 aa12.77□□□□□ -0.36
HCFC1-201ENST00000310441 GTSF1LQ9H1H1 148 aa12.77□□□□□ -0.36
HCFC1-201ENST00000310441 TNS1Q9HBL0 1735 aaKnown RBP12.77□□□□□ -0.36
HCFC1-201ENST00000310441 TRACP01848 142 aa12.77□□□□□ -0.37
HCFC1-201ENST00000310441 WBP1Q96G27 269 aa12.77□□□□□ -0.37
HCFC1-201ENST00000310441 LSM4Q9Y4Z0 139 aaKnown RBP12.77□□□□□ -0.37
HCFC1-201ENST00000310441 SUPT4H1P63272 117 aaKnown RBP12.77□□□□□ -0.37
HCFC1-201ENST00000310441 FAM27E3Q08E93 113 aa12.77□□□□□ -0.37
HCFC1-201ENST00000310441 RMI2Q96E14 147 aa12.77□□□□□ -0.37
HCFC1-201ENST00000310441 FAM208BQ5VWN6 2430 aa12.77□□□□□ -0.37
HCFC1-201ENST00000310441 E9PLN8 166 aa12.77□□□□□ -0.37
HCFC1-201ENST00000310441 DLEU1O43261 78 aa12.77□□□□□ -0.37
HCFC1-201ENST00000310441 TMEM126AQ9H061 195 aa12.77□□□□□ -0.37
HCFC1-201ENST00000310441 IFITM1P13164 125 aa12.76□□□□□ -0.37
HCFC1-201ENST00000310441 IGHV2-26A0A0B4J1V2 119 aa12.76□□□□□ -0.37
HCFC1-201ENST00000310441 ZNF561-AS1K7EIQ3 104 aa12.76□□□□□ -0.37
HCFC1-201ENST00000310441 TMEM75Q8N9X5 138 aa12.76□□□□□ -0.37
HCFC1-201ENST00000310441 WDR83OSQ9Y284 106 aa12.76□□□□□ -0.37
HCFC1-201ENST00000310441 LINC01551Q86U37 167 aa12.76□□□□□ -0.37
HCFC1-201ENST00000310441 CSPG4Q6UVK1 2322 aa12.76□□□□□ -0.37
HCFC1-201ENST00000310441 IGHV3OR16-8A0A075B7F1 116 aa12.76□□□□□ -0.37
HCFC1-201ENST00000310441 RFPL3SP0C7P2 107 aa12.76□□□□□ -0.37
HCFC1-201ENST00000310441 TIMM23O14925 209 aa12.76□□□□□ -0.37
HCFC1-201ENST00000310441 CD55P08174 381 aa12.75□□□□□ -0.37
HCFC1-201ENST00000310441 PPDPFLQ8WWR9 84 aa12.75□□□□□ -0.37
HCFC1-201ENST00000310441 NPC2P61916 151 aa12.75□□□□□ -0.37
HCFC1-201ENST00000310441 A0A0U1RRA0 63 aa12.75□□□□□ -0.37
HCFC1-201ENST00000310441 C1orf159Q96HA4 380 aa12.75□□□□□ -0.37
HCFC1-201ENST00000310441 IGKV2-40A0A087WW87 121 aaPredicted RBP12.74□□□□□ -0.37
HCFC1-201ENST00000310441 FAM231BA6NCW3 169 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms