RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 F8WEM9 126 aa15.63■□□□□ 0.09
UPF1-201ENST00000262803 LINC01551Q86U37 167 aa15.63■□□□□ 0.09
UPF1-201ENST00000262803 DAZ1Q9NQZ3 744 aaKnown RBP15.63■□□□□ 0.09
UPF1-201ENST00000262803 FER1L5A0AVI2 2057 aa15.63■□□□□ 0.09
UPF1-201ENST00000262803 RLFQ13129 1914 aa15.63■□□□□ 0.09
UPF1-201ENST00000262803 SPTAN1Q13813 2472 aaKnown RBP15.63■□□□□ 0.09
UPF1-201ENST00000262803 SIGLEC9Q9Y336 463 aa15.63■□□□□ 0.09
UPF1-201ENST00000262803 WNK2Q9Y3S1 2297 aa15.63■□□□□ 0.09
UPF1-201ENST00000262803 K7ENP7 123 aa15.63■□□□□ 0.09
UPF1-201ENST00000262803 MYO7BQ6PIF6 2116 aa15.63■□□□□ 0.09
UPF1-201ENST00000262803 AGMATQ9BSE5 352 aa15.63■□□□□ 0.09
UPF1-201ENST00000262803 PKDREJQ9NTG1 2253 aa15.63■□□□□ 0.09
UPF1-201ENST00000262803 M0R2P5 195 aa15.62■□□□□ 0.09
UPF1-201ENST00000262803 FAM90A2PQ658T7 463 aa15.62■□□□□ 0.09
UPF1-201ENST00000262803 C3orf56Q8N813 242 aa15.62■□□□□ 0.09
UPF1-201ENST00000262803 KLHL30-AS1Q8NEE0 82 aa15.62■□□□□ 0.09
UPF1-201ENST00000262803 CST9LQ9H4G1 147 aa15.62■□□□□ 0.09
UPF1-201ENST00000262803 LRRK1Q38SD2 2015 aa15.62■□□□□ 0.09
UPF1-201ENST00000262803 PSCAO43653 123 aa15.62■□□□□ 0.09
UPF1-201ENST00000262803 RHODO00212 210 aa15.62■□□□□ 0.09
UPF1-201ENST00000262803 NDUFB8O95169 186 aa15.62■□□□□ 0.09
UPF1-201ENST00000262803 UBE2E1P51965 193 aa15.62■□□□□ 0.09
UPF1-201ENST00000262803 B3GALT5-AS1P59052 145 aa15.62■□□□□ 0.09
UPF1-201ENST00000262803 TRAV3A0A0B4J244 114 aa15.62■□□□□ 0.09
UPF1-201ENST00000262803 LCN12Q6JVE5 192 aa15.62■□□□□ 0.09
UPF1-201ENST00000262803 MGST2Q99735 147 aa15.62■□□□□ 0.09
UPF1-201ENST00000262803 DERL1Q9BUN8 251 aa15.62■□□□□ 0.09
UPF1-201ENST00000262803 TRGV1A0A0A0MS02 117 aa15.61■□□□□ 0.09
UPF1-201ENST00000262803 ASCL4Q6XD76 172 aa15.61■□□□□ 0.09
UPF1-201ENST00000262803 TCF20Q9UGU0 1960 aaKnown RBP15.61■□□□□ 0.09
UPF1-201ENST00000262803 PMS2P5A8MQ11 134 aa15.61■□□□□ 0.09
UPF1-201ENST00000262803 Q6P435 159 aa15.61■□□□□ 0.09
UPF1-201ENST00000262803 PI4KAP42356 2102 aa15.61■□□□□ 0.09
UPF1-201ENST00000262803 COL6A6A6NMZ7 2263 aa15.61■□□□□ 0.09
UPF1-201ENST00000262803 PSG3Q16557 428 aa15.61■□□□□ 0.09
UPF1-201ENST00000262803 IGFL3Q6UXB1 125 aa15.61■□□□□ 0.09
UPF1-201ENST00000262803 Q8TCH9 128 aa15.61■□□□□ 0.09
UPF1-201ENST00000262803 MSMBP08118 114 aa15.61■□□□□ 0.09
UPF1-201ENST00000262803 TRAV2A0A0B4J234 112 aa15.6■□□□□ 0.09
UPF1-201ENST00000262803 ERCC8Q13216 396 aa15.6■□□□□ 0.09
UPF1-201ENST00000262803 TRPM7Q96QT4 1865 aa15.6■□□□□ 0.09
UPF1-201ENST00000262803 ORAOV1Q8WV07 137 aa15.6■□□□□ 0.09
UPF1-201ENST00000262803 LINC00473A8K010 186 aa15.6■□□□□ 0.09
UPF1-201ENST00000262803 PPIFP30405 207 aaKnown RBP15.6■□□□□ 0.09
UPF1-201ENST00000262803 SS18Q15532 418 aa15.6■□□□□ 0.09
UPF1-201ENST00000262803 LHFPL4Q7Z7J7 247 aa15.6■□□□□ 0.09
UPF1-201ENST00000262803 FAM110DQ8TAY7 271 aaPredicted RBP15.6■□□□□ 0.09
UPF1-201ENST00000262803 HEATR1Q9H583 2144 aaKnown RBP15.6■□□□□ 0.09
UPF1-201ENST00000262803 SRRM4A7MD48 611 aaKnown RBP15.6■□□□□ 0.09
UPF1-201ENST00000262803 LYL1P12980 280 aa15.6■□□□□ 0.09
UPF1-201ENST00000262803 ZNF876PQ49A33 203 aa15.6■□□□□ 0.09
UPF1-201ENST00000262803 ERG28Q9UKR5 140 aa15.6■□□□□ 0.09
UPF1-201ENST00000262803 E9PQ18 207 aa15.59■□□□□ 0.09
UPF1-201ENST00000262803 KLRD1Q13241 179 aa15.59■□□□□ 0.09
UPF1-201ENST00000262803 TMEM219Q86XT9 240 aa15.59■□□□□ 0.09
UPF1-201ENST00000262803 NPIPB5A8MRT5 1133 aa15.59■□□□□ 0.09
UPF1-201ENST00000262803 SRSF6Q13247 344 aaKnown RBP15.58■□□□□ 0.09
UPF1-201ENST00000262803 CACNA1HO95180 2353 aa15.58■□□□□ 0.09
UPF1-201ENST00000262803 IGKV2-40A0A087WW87 121 aaPredicted RBP15.58■□□□□ 0.09
UPF1-201ENST00000262803 A0A0G2JRQ6 117 aa15.58■□□□□ 0.09
UPF1-201ENST00000262803 IGKV2D-40P01614 121 aaPredicted RBP15.58■□□□□ 0.09
UPF1-201ENST00000262803 DEFB121Q5J5C9 76 aa15.58■□□□□ 0.09
UPF1-201ENST00000262803 SP5Q6BEB4 398 aaPredicted RBP15.58■□□□□ 0.09
UPF1-201ENST00000262803 LCNL1Q6ZST4 164 aa15.58■□□□□ 0.09
UPF1-201ENST00000262803 ZSWIM8A7E2V4 1837 aa15.58■□□□□ 0.08
UPF1-201ENST00000262803 GFRA4Q9GZZ7 299 aa15.58■□□□□ 0.08
UPF1-201ENST00000262803 SCRT1Q9BWW7 348 aa15.58■□□□□ 0.08
UPF1-201ENST00000262803 H3BUT2 72 aa15.58■□□□□ 0.08
UPF1-201ENST00000262803 RHPN1-AS1Q9BWJ2 59 aa15.58■□□□□ 0.08
UPF1-201ENST00000262803 CLDN16Q9Y5I7 305 aa15.58■□□□□ 0.08
UPF1-201ENST00000262803 TRAV8-2A0A0B4J237 113 aa15.57■□□□□ 0.08
UPF1-201ENST00000262803 IGKV3D-20A0A0C4DH25 116 aa15.57■□□□□ 0.08
UPF1-201ENST00000262803 RPRMLQ8N4K4 120 aa15.57■□□□□ 0.08
UPF1-201ENST00000262803 A8MWV9 139 aa15.57■□□□□ 0.08
UPF1-201ENST00000262803 NHP2Q9NX24 153 aaKnown RBP15.57■□□□□ 0.08
UPF1-201ENST00000262803 PLXNA3P51805 1871 aa15.57■□□□□ 0.08
UPF1-201ENST00000262803 PRB4P10163 310 aaPredicted RBP15.57■□□□□ 0.08
UPF1-201ENST00000262803 RPL15P61313 204 aaKnown RBP15.57■□□□□ 0.08
UPF1-201ENST00000262803 CADP27708 2225 aa15.57■□□□□ 0.08
UPF1-201ENST00000262803 MYMXA0A1B0GTQ4 84 aa15.57■□□□□ 0.08
UPF1-201ENST00000262803 GATA4P43694 442 aa15.57■□□□□ 0.08
UPF1-201ENST00000262803 ACTL10Q5JWF8 245 aa15.57■□□□□ 0.08
UPF1-201ENST00000262803 Q6ZRM9 215 aa15.57■□□□□ 0.08
UPF1-201ENST00000262803 CRIM1Q9NZV1 1036 aa15.57■□□□□ 0.08
UPF1-201ENST00000262803 LGALS1P09382 135 aaKnown RBP15.56■□□□□ 0.08
UPF1-201ENST00000262803 CFPP27918 469 aa15.56■□□□□ 0.08
UPF1-201ENST00000262803 NTF4P34130 210 aa15.56■□□□□ 0.08
UPF1-201ENST00000262803 TRAV8-4A0A0B4J246 113 aa15.56■□□□□ 0.08
UPF1-201ENST00000262803 GZMBP10144 247 aa15.56■□□□□ 0.08
UPF1-201ENST00000262803 LINC00205P59089 165 aa15.56■□□□□ 0.08
UPF1-201ENST00000262803 SH2D1AO60880 128 aa15.56■□□□□ 0.08
UPF1-201ENST00000262803 CEACAM8P31997 349 aaPredicted RBP15.56■□□□□ 0.08
UPF1-201ENST00000262803 ZNF562Q6V9R5 426 aa15.56■□□□□ 0.08
UPF1-201ENST00000262803 RSPO3Q9BXY4 272 aaPredicted RBP15.56■□□□□ 0.08
UPF1-201ENST00000262803 LINC01619G3V211 115 aa15.55■□□□□ 0.08
UPF1-201ENST00000262803 C11orf44Q8N8P7 122 aa15.55■□□□□ 0.08
UPF1-201ENST00000262803 ADCYAP1P18509 176 aa15.55■□□□□ 0.08
UPF1-201ENST00000262803 EXOC3-AS1Q8N2X6 119 aa15.55■□□□□ 0.08
UPF1-201ENST00000262803 DNAJC30Q96LL9 226 aa15.55■□□□□ 0.08
UPF1-201ENST00000262803 LINC00527Q9UJ94 153 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 154.9 ms