RNA–Protein interactions for RNA: ENST00000216639.7

VRK1-201, Transcript of vaccinia related kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VRK1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-201ENST00000216639 TRAV34A0A0B4J273 112 aa13.54□□□□□ -0.24
VRK1-201ENST00000216639 BRI3O95415 125 aa13.54□□□□□ -0.24
VRK1-201ENST00000216639 TRGV3P03979 118 aa13.54□□□□□ -0.24
VRK1-201ENST00000216639 RAB9AP51151 201 aa13.54□□□□□ -0.24
VRK1-201ENST00000216639 RELQ04864 619 aaPredicted RBP13.54□□□□□ -0.24
VRK1-201ENST00000216639 IBA57Q5T440 356 aaKnown RBP13.54□□□□□ -0.24
VRK1-201ENST00000216639 CCDC140Q96MF4 163 aa13.54□□□□□ -0.24
VRK1-201ENST00000216639 ZNF320A2RRD8 509 aa13.53□□□□□ -0.24
VRK1-201ENST00000216639 SLC17A3O00476 420 aa13.53□□□□□ -0.24
VRK1-201ENST00000216639 MRPS12O15235 138 aaKnown RBP13.53□□□□□ -0.24
VRK1-201ENST00000216639 RPL19P84098 196 aaKnown RBP13.53□□□□□ -0.24
VRK1-201ENST00000216639 DEFB112Q30KQ8 113 aa13.53□□□□□ -0.24
VRK1-201ENST00000216639 ZNF414Q96IQ9 312 aa13.53□□□□□ -0.24
VRK1-201ENST00000216639 Q96MF0 132 aa13.53□□□□□ -0.24
VRK1-201ENST00000216639 GPR82Q96P67 336 aa13.53□□□□□ -0.24
VRK1-201ENST00000216639 LINC00527Q9UJ94 153 aa13.53□□□□□ -0.24
VRK1-201ENST00000216639 V9GYV3 84 aa13.53□□□□□ -0.24
VRK1-201ENST00000216639 UBE2CO00762 179 aa13.53□□□□□ -0.24
VRK1-201ENST00000216639 TOMM20LQ6UXN7 152 aa13.53□□□□□ -0.24
VRK1-201ENST00000216639 EXOC3-AS1Q8N2X6 119 aa13.53□□□□□ -0.24
VRK1-201ENST00000216639 OR5R1Q8NH85 324 aa13.53□□□□□ -0.24
VRK1-201ENST00000216639 AAMDCQ9H7C9 122 aa13.53□□□□□ -0.24
VRK1-201ENST00000216639 K7EQM0 130 aa13.52□□□□□ -0.25
VRK1-201ENST00000216639 PSG9Q00887 426 aa13.52□□□□□ -0.25
VRK1-201ENST00000216639 FABP9Q0Z7S8 132 aa13.52□□□□□ -0.25
VRK1-201ENST00000216639 FAM231DQ6ZW35 169 aa13.52□□□□□ -0.25
VRK1-201ENST00000216639 OR8I2Q8N0Y5 310 aa13.52□□□□□ -0.25
VRK1-201ENST00000216639 NHLRC2Q8NBF2 726 aa13.52□□□□□ -0.25
VRK1-201ENST00000216639 USMG5Q96IX5 58 aa13.52□□□□□ -0.25
VRK1-201ENST00000216639 RNASE7Q9H1E1 156 aaKnown RBP13.52□□□□□ -0.25
VRK1-201ENST00000216639 HIST1H2BKO60814 126 aa13.51□□□□□ -0.25
VRK1-201ENST00000216639 HIST1H2BJP06899 126 aa13.51□□□□□ -0.25
VRK1-201ENST00000216639 TRGC1P0CF51 173 aa13.51□□□□□ -0.25
VRK1-201ENST00000216639 HIST1H2BOP23527 126 aa13.51□□□□□ -0.25
VRK1-201ENST00000216639 HIST1H2BBP33778 126 aa13.51□□□□□ -0.25
VRK1-201ENST00000216639 AKR1D1P51857 326 aa13.51□□□□□ -0.25
VRK1-201ENST00000216639 HIST1H2BDP58876 126 aa13.51□□□□□ -0.25
VRK1-201ENST00000216639 TPPP2P59282 170 aa13.51□□□□□ -0.25
VRK1-201ENST00000216639 HIST1H2BCP62807 126 aa13.51□□□□□ -0.25
VRK1-201ENST00000216639 HIST2H2BEQ16778 126 aa13.51□□□□□ -0.25
VRK1-201ENST00000216639 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.51□□□□□ -0.25
VRK1-201ENST00000216639 SIGLEC15Q6ZMC9 328 aa13.51□□□□□ -0.25
VRK1-201ENST00000216639 BCL6BQ8N143 479 aaPredicted RBP13.51□□□□□ -0.25
VRK1-201ENST00000216639 FRZBQ92765 325 aa13.51□□□□□ -0.25
VRK1-201ENST00000216639 HIST1H2BHQ93079 126 aa13.51□□□□□ -0.25
VRK1-201ENST00000216639 HIST1H2BNQ99877 126 aa13.51□□□□□ -0.25
VRK1-201ENST00000216639 HIST1H2BMQ99879 126 aa13.51□□□□□ -0.25
VRK1-201ENST00000216639 ZFAND3Q9H8U3 227 aa13.51□□□□□ -0.25
VRK1-201ENST00000216639 SERTAD4Q9NUC0 356 aa13.51□□□□□ -0.25
VRK1-201ENST00000216639 SPG11Q96JI7 2443 aa13.51□□□□□ -0.25
VRK1-201ENST00000216639 FAM208BQ5VWN6 2430 aa13.5□□□□□ -0.25
VRK1-201ENST00000216639 ABCA1O95477 2261 aa13.5□□□□□ -0.25
VRK1-201ENST00000216639 ZNF705GA8MUZ8 300 aaPredicted RBP13.5□□□□□ -0.25
VRK1-201ENST00000216639 PPIFP30405 207 aaKnown RBP13.5□□□□□ -0.25
VRK1-201ENST00000216639 IER3P46695 156 aa13.5□□□□□ -0.25
VRK1-201ENST00000216639 NDUFA6P56556 154 aa13.5□□□□□ -0.25
VRK1-201ENST00000216639 BLCAPP62952 87 aa13.5□□□□□ -0.25
VRK1-201ENST00000216639 CYB5R2Q6BCY4 276 aa13.5□□□□□ -0.25
VRK1-201ENST00000216639 C17orf77Q96MU5 243 aa13.5□□□□□ -0.25
VRK1-201ENST00000216639 ASH1LQ9NR48 2969 aaKnown RBP13.5□□□□□ -0.25
VRK1-201ENST00000216639 IGHV3-35A0A0C4DH35 117 aa13.5□□□□□ -0.25
VRK1-201ENST00000216639 LTAP01374 205 aa13.5□□□□□ -0.25
VRK1-201ENST00000216639 IGHV4-59P01825 116 aa13.5□□□□□ -0.25
VRK1-201ENST00000216639 SMUG1Q53HV7 270 aa13.5□□□□□ -0.25
VRK1-201ENST00000216639 C9orf139Q6ZV77 190 aa13.5□□□□□ -0.25
VRK1-201ENST00000216639 ZNF580Q9UK33 172 aa13.5□□□□□ -0.25
VRK1-201ENST00000216639 PHOX2AO14813 284 aa13.49□□□□□ -0.25
VRK1-201ENST00000216639 GATCO43716 136 aaKnown RBP13.49□□□□□ -0.25
VRK1-201ENST00000216639 FSHBP01225 129 aa13.49□□□□□ -0.25
VRK1-201ENST00000216639 CSN1S1P47710 185 aa13.49□□□□□ -0.25
VRK1-201ENST00000216639 ACTL10Q5JWF8 245 aa13.49□□□□□ -0.25
VRK1-201ENST00000216639 GOLT1AQ6ZVE7 132 aa13.49□□□□□ -0.25
VRK1-201ENST00000216639 TRBV6-1A0A0K0K1D8 114 aa13.48□□□□□ -0.25
VRK1-201ENST00000216639 TMEM75Q8N9X5 138 aa13.48□□□□□ -0.25
VRK1-201ENST00000216639 SGK494Q96LW2 274 aa13.48□□□□□ -0.25
VRK1-201ENST00000216639 NOL4LQ96MY1 436 aaPredicted RBP13.48□□□□□ -0.25
VRK1-201ENST00000216639 METTL26Q96S19 204 aa13.48□□□□□ -0.25
VRK1-201ENST00000216639 CHD6Q8TD26 2715 aa13.48□□□□□ -0.25
VRK1-201ENST00000216639 A0A0G2JLM5 398 aa13.47□□□□□ -0.25
VRK1-201ENST00000216639 SERTM2A0A1B0GWG4 89 aa13.47□□□□□ -0.25
VRK1-201ENST00000216639 ZNF253O75346 499 aa13.47□□□□□ -0.25
VRK1-201ENST00000216639 ARL3P36405 182 aa13.47□□□□□ -0.25
VRK1-201ENST00000216639 PRR27Q6MZM9 219 aa13.47□□□□□ -0.25
VRK1-201ENST00000216639 Q86TA4 180 aa13.47□□□□□ -0.25
VRK1-201ENST00000216639 ARL6IP6Q8N6S5 226 aa13.47□□□□□ -0.25
VRK1-201ENST00000216639 PSMG3-AS1Q96PY0 264 aa13.47□□□□□ -0.25
VRK1-201ENST00000216639 MLST8Q9BVC4 326 aa13.47□□□□□ -0.25
VRK1-201ENST00000216639 TRAPPC1Q9Y5R8 145 aa13.47□□□□□ -0.25
VRK1-201ENST00000216639 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.47□□□□□ -0.251e-7■■■■■ 26.9
VRK1-201ENST00000216639 IGHV3OR16-8A0A075B7F1 116 aa13.47□□□□□ -0.25
VRK1-201ENST00000216639 PF4V1P10720 104 aa13.47□□□□□ -0.25
VRK1-201ENST00000216639 RPL15P61313 204 aaKnown RBP13.47□□□□□ -0.25
VRK1-201ENST00000216639 C1orf194Q5T5A4 169 aa13.47□□□□□ -0.25
VRK1-201ENST00000216639 TMEM183AQ8IXX5 376 aa13.47□□□□□ -0.25
VRK1-201ENST00000216639 GRAMD2BQ96HH9 432 aa13.47□□□□□ -0.25
VRK1-201ENST00000216639 SMIM27A0A1W2PRY6 76 aa13.46□□□□□ -0.25
VRK1-201ENST00000216639 BUB3O43684 328 aa13.46□□□□□ -0.25
VRK1-201ENST00000216639 HOXA5P20719 270 aa13.46□□□□□ -0.25
VRK1-201ENST00000216639 KRTAP1-3Q8IUG1 177 aa13.46□□□□□ -0.25
VRK1-201ENST00000216639 NUDT10Q8NFP7 164 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms