RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 DPYSL4O14531 572 aa5.72□□□□□ -1.49
SCN1A-218ENST00000640036 KRT13P13646 458 aa5.72□□□□□ -1.49
SCN1A-218ENST00000640036 SNX16P57768 344 aa5.72□□□□□ -1.49
SCN1A-218ENST00000640036 CCDC17Q96LX7 622 aa5.72□□□□□ -1.49
SCN1A-218ENST00000640036 PTPRZ1P23471 2315 aaPredicted RBP5.71□□□□□ -1.49
SCN1A-218ENST00000640036 FBLN1P23142 703 aa5.71□□□□□ -1.49
SCN1A-218ENST00000640036 NOGQ13253 232 aa5.71□□□□□ -1.49
SCN1A-218ENST00000640036 OTUD5Q96G74 571 aa5.71□□□□□ -1.49
SCN1A-218ENST00000640036 MRPL11Q9Y3B7 192 aaKnown RBP5.71□□□□□ -1.49
SCN1A-218ENST00000640036 MAP3K15Q6ZN16 1313 aa5.71□□□□□ -1.49
SCN1A-218ENST00000640036 XPOTO43592 962 aaKnown RBP5.71□□□□□ -1.5
SCN1A-218ENST00000640036 IDEP14735 1019 aa5.71□□□□□ -1.5
SCN1A-218ENST00000640036 APLP1P51693 650 aa5.71□□□□□ -1.5
SCN1A-218ENST00000640036 ABCB5Q2M3G0 1257 aa5.71□□□□□ -1.5
SCN1A-218ENST00000640036 SKOR2Q2VWA4 1001 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-218ENST00000640036 CCAR2Q8N163 923 aaKnown RBP5.71□□□□□ -1.5
SCN1A-218ENST00000640036 JPH2Q9BR39 696 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-218ENST00000640036 METTL22Q9BUU2 404 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-218ENST00000640036 CCDC175P0C221 793 aa5.71□□□□□ -1.5
SCN1A-218ENST00000640036 CTNNA2P26232 953 aa5.71□□□□□ -1.5
SCN1A-218ENST00000640036 ME1P48163 572 aa5.71□□□□□ -1.5
SCN1A-218ENST00000640036 PODNQ7Z5L7 613 aa5.71□□□□□ -1.5
SCN1A-218ENST00000640036 YAF2Q8IY57 180 aa5.71□□□□□ -1.5
SCN1A-218ENST00000640036 AATFQ9NY61 560 aaKnown RBP eCLIP5.71□□□□□ -1.5
SCN1A-218ENST00000640036 HOXC10Q9NYD6 342 aa5.71□□□□□ -1.5
SCN1A-218ENST00000640036 TRIM17Q9Y577 477 aa5.71□□□□□ -1.5
SCN1A-218ENST00000640036 TRIM75PA6NK02 468 aa5.71□□□□□ -1.5
SCN1A-218ENST00000640036 CTSWP56202 376 aa5.71□□□□□ -1.5
SCN1A-218ENST00000640036 OTUD6AQ7L8S5 288 aa5.71□□□□□ -1.5
SCN1A-218ENST00000640036 GTF3C2Q8WUA4 911 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-218ENST00000640036 DCDC2CA8MYV0 355 aa5.71□□□□□ -1.5
SCN1A-218ENST00000640036 POLR3GO15318 223 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-218ENST00000640036 CA12O43570 354 aa5.71□□□□□ -1.5
SCN1A-218ENST00000640036 PRKCSHP14314 528 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-218ENST00000640036 MCM5P33992 734 aa5.71□□□□□ -1.5
SCN1A-218ENST00000640036 CTCFP49711 727 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-218ENST00000640036 SEPT7Q16181 437 aaKnown RBP5.71□□□□□ -1.5
SCN1A-218ENST00000640036 GBA2Q9HCG7 927 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-218ENST00000640036 IGFBP4P22692 258 aa5.71□□□□□ -1.5
SCN1A-218ENST00000640036 NEK4P51957 841 aa5.71□□□□□ -1.5
SCN1A-218ENST00000640036 Q3C1V9 767 aa5.71□□□□□ -1.5
SCN1A-218ENST00000640036 TCERG1LQ5VWI1 586 aa5.71□□□□□ -1.5
SCN1A-218ENST00000640036 DPH6Q7L8W6 267 aa5.71□□□□□ -1.5
SCN1A-218ENST00000640036 TTC30AQ86WT1 665 aa5.71□□□□□ -1.5
SCN1A-218ENST00000640036 ZNF496Q96IT1 587 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-218ENST00000640036 JAKMIP1Q96N16 626 aaKnown RBP5.71□□□□□ -1.5
SCN1A-218ENST00000640036 ADARB2Q9NS39 739 aaKnown RBP5.71□□□□□ -1.5
SCN1A-218ENST00000640036 HOXB7P09629 217 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 CETPP11597 493 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 YARSP54577 528 aaKnown RBP5.7□□□□□ -1.5
SCN1A-218ENST00000640036 AEBP1Q8IUX7 1158 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 FHDC1Q9C0D6 1143 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-218ENST00000640036 FAM114A2Q9NRY5 505 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 POLKQ9UBT6 870 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 SLC8A2Q9UPR5 921 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 CPS1P31327 1500 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 NBPF26B4DH59 902 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 SEMA3EO15041 775 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 ABL1P00519 1130 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 CFBP00751 764 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 UTP14CQ5TAP6 766 aaKnown RBP5.7□□□□□ -1.5
SCN1A-218ENST00000640036 FAM160B1Q5W0V3 765 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 HS2ST1Q7LGA3 356 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 NKX2-3Q8TAU0 364 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 LMCD1Q9NZU5 365 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 CFAP45Q9UL16 551 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 POLIQ9UNA4 740 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 PARD3Q8TEW0 1356 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 AOC3Q16853 763 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 ZNF569Q5MCW4 686 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 FNBP4Q8N3X1 1017 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-218ENST00000640036 TGFBRAP1Q8WUH2 860 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 GPR101Q96P66 508 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-218ENST00000640036 ANO3Q9BYT9 981 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 MFSD1Q9H3U5 465 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 SRP68Q9UHB9 627 aaKnown RBP5.7□□□□□ -1.5
SCN1A-218ENST00000640036 MRVI1Q9Y6F6 885 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 TNS3Q68CZ2 1445 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 FAM13AO94988 1023 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 RNF180Q86T96 592 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 MICU3Q86XE3 530 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 ZBTB38Q8NAP3 1195 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-218ENST00000640036 RNF34Q969K3 372 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 DHX36Q9H2U1 1008 aaKnown RBP5.7□□□□□ -1.5
SCN1A-218ENST00000640036 FBXO40Q9UH90 709 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 MSRAQ9UJ68 235 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 ZFYVE9O95405 1425 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 C8orf76Q96K31 380 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 IPO9Q96P70 1041 aaKnown RBP5.7□□□□□ -1.5
SCN1A-218ENST00000640036 GAS2L1Q99501 681 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-218ENST00000640036 RIOK1Q9BRS2 568 aaKnown RBP5.7□□□□□ -1.5
SCN1A-218ENST00000640036 PKD2L1Q9P0L9 805 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 TAF5LO75529 589 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 EIF5P55010 431 aaKnown RBP5.7□□□□□ -1.5
SCN1A-218ENST00000640036 PRPF40BQ6NWY9 871 aaKnown RBP5.7□□□□□ -1.5
SCN1A-218ENST00000640036 CAVIN1Q6NZI2 390 aaKnown RBP5.7□□□□□ -1.5
SCN1A-218ENST00000640036 BARGINQ6ZT62 677 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 TRIM5Q9C035 493 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 NUB1Q9Y5A7 615 aa5.7□□□□□ -1.5
SCN1A-218ENST00000640036 TESPA1A2RU30 521 aaPredicted RBP5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 91.3 ms