RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 MMP14P50281 582 aa13.51□□□□□ -0.25
CLN6-217ENST00000636964 CSPP1Q1MSJ5 1256 aa13.51□□□□□ -0.25
CLN6-217ENST00000636964 TXNRD3Q86VQ6 643 aa13.51□□□□□ -0.25
CLN6-217ENST00000636964 NKX2-3Q8TAU0 364 aa13.51□□□□□ -0.25
CLN6-217ENST00000636964 DDX11Q96FC9 970 aa13.51□□□□□ -0.25
CLN6-217ENST00000636964 SYCE3A1L190 88 aa13.51□□□□□ -0.25
CLN6-217ENST00000636964 SLC27A3Q5K4L6 730 aa13.51□□□□□ -0.25
CLN6-217ENST00000636964 GNL3LQ9NVN8 582 aaKnown RBP13.51□□□□□ -0.25
CLN6-217ENST00000636964 LAMA4Q16363 1823 aa13.51□□□□□ -0.25
CLN6-217ENST00000636964 RBM6P78332 1123 aaKnown RBP13.51□□□□□ -0.25
CLN6-217ENST00000636964 SCRN1Q12765 414 aa13.51□□□□□ -0.25
CLN6-217ENST00000636964 FERMT3Q86UX7 667 aa13.51□□□□□ -0.25
CLN6-217ENST00000636964 RAB11FIP4Q86YS3 637 aa13.51□□□□□ -0.25
CLN6-217ENST00000636964 NBPF3Q9H094 633 aa13.51□□□□□ -0.25
CLN6-217ENST00000636964 NCOA5Q9HCD5 579 aaKnown RBP13.51□□□□□ -0.25
CLN6-217ENST00000636964 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.51□□□□□ -0.25
CLN6-217ENST00000636964 ARAP2Q8WZ64 1704 aa13.51□□□□□ -0.25
CLN6-217ENST00000636964 SERPINB2P05120 415 aa13.5□□□□□ -0.25
CLN6-217ENST00000636964 CYP7A1P22680 504 aa13.5□□□□□ -0.25
CLN6-217ENST00000636964 MCM5P33992 734 aa13.5□□□□□ -0.25
CLN6-217ENST00000636964 ADGRA1Q86SQ6 560 aa13.5□□□□□ -0.25
CLN6-217ENST00000636964 LCORLQ8N3X6 602 aa13.5□□□□□ -0.25
CLN6-217ENST00000636964 GTF3C6Q969F1 213 aa13.5□□□□□ -0.25
CLN6-217ENST00000636964 MTMR6Q9Y217 621 aa13.5□□□□□ -0.25
CLN6-217ENST00000636964 APBA3O96018 575 aa13.5□□□□□ -0.25
CLN6-217ENST00000636964 FOSBP53539 338 aa13.5□□□□□ -0.25
CLN6-217ENST00000636964 CHAF1AQ13111 956 aaPredicted RBP13.5□□□□□ -0.25
CLN6-217ENST00000636964 LRSAM1Q6UWE0 723 aa13.5□□□□□ -0.25
CLN6-217ENST00000636964 MPNDQ8N594 471 aa13.5□□□□□ -0.25
CLN6-217ENST00000636964 ANKIB1Q9P2G1 1089 aa13.5□□□□□ -0.25
CLN6-217ENST00000636964 ZNF804BA4D1E1 1349 aa13.49□□□□□ -0.25
CLN6-217ENST00000636964 F13A1P00488 732 aa13.49□□□□□ -0.25
CLN6-217ENST00000636964 TBC1D10CQ8IV04 446 aa13.49□□□□□ -0.25
CLN6-217ENST00000636964 GPR101Q96P66 508 aaPredicted RBP13.49□□□□□ -0.25
CLN6-217ENST00000636964 CNPY2Q9Y2B0 182 aa13.49□□□□□ -0.25
CLN6-217ENST00000636964 RALYLQ86SE5 291 aaKnown RBP13.49□□□□□ -0.25
CLN6-217ENST00000636964 RNF214Q8ND24 703 aa13.49□□□□□ -0.25
CLN6-217ENST00000636964 EPB41L4AQ9HCS5 686 aaPredicted RBP13.49□□□□□ -0.25
CLN6-217ENST00000636964 COL1A1P02452 1464 aaPredicted RBP13.49□□□□□ -0.25
CLN6-217ENST00000636964 PRC1O43663 620 aa13.49□□□□□ -0.25
CLN6-217ENST00000636964 CTDSPL2Q05D32 466 aa13.49□□□□□ -0.25
CLN6-217ENST00000636964 IFNL3Q8IZI9 196 aa13.49□□□□□ -0.25
CLN6-217ENST00000636964 C17orf53Q8N3J3 647 aaPredicted RBP13.49□□□□□ -0.25
CLN6-217ENST00000636964 SLC4A4Q9Y6R1 1079 aa13.49□□□□□ -0.25
CLN6-217ENST00000636964 COL24A1Q17RW2 1714 aa13.49□□□□□ -0.25
CLN6-217ENST00000636964 AXDND1Q5T1B0 1012 aaPredicted RBP13.48□□□□□ -0.25
CLN6-217ENST00000636964 ZNF772Q68DY9 489 aaPredicted RBP13.48□□□□□ -0.25
CLN6-217ENST00000636964 FAM173BQ6P4H8 233 aa13.48□□□□□ -0.25
CLN6-217ENST00000636964 CDC37L1Q7L3B6 337 aa13.48□□□□□ -0.25
CLN6-217ENST00000636964 NCOA7Q8NI08 942 aa13.48□□□□□ -0.25
CLN6-217ENST00000636964 NAPBQ9H115 298 aa13.48□□□□□ -0.25
CLN6-217ENST00000636964 CCDC39Q9UFE4 941 aa13.48□□□□□ -0.25
CLN6-217ENST00000636964 TNRC6CQ9HCJ0 1690 aaKnown RBP13.48□□□□□ -0.25
CLN6-217ENST00000636964 SRCAPQ6ZRS2 3230 aa13.48□□□□□ -0.25
CLN6-217ENST00000636964 TCHHQ07283 1943 aa13.48□□□□□ -0.25
CLN6-217ENST00000636964 GADD45BO75293 160 aaPredicted RBP13.48□□□□□ -0.25
CLN6-217ENST00000636964 HIBADHP31937 336 aaKnown RBP13.48□□□□□ -0.25
CLN6-217ENST00000636964 ANTXR2P58335 489 aa13.48□□□□□ -0.25
CLN6-217ENST00000636964 FBXO33Q7Z6M2 555 aa13.48□□□□□ -0.25
CLN6-217ENST00000636964 USP48Q86UV5 1035 aa13.48□□□□□ -0.25
CLN6-217ENST00000636964 MB21D2Q8IYB1 491 aaPredicted RBP13.48□□□□□ -0.25
CLN6-217ENST00000636964 ANKRD2Q9GZV1 360 aa13.48□□□□□ -0.25
CLN6-217ENST00000636964 GSG1L2A8MUP6 293 aa13.47□□□□□ -0.25
CLN6-217ENST00000636964 DDR1Q08345 913 aa13.47□□□□□ -0.25
CLN6-217ENST00000636964 ZNF827Q17R98 1081 aa13.47□□□□□ -0.25
CLN6-217ENST00000636964 SDR42E1Q8WUS8 393 aa13.47□□□□□ -0.25
CLN6-217ENST00000636964 RPGRQ92834 1020 aaKnown RBP13.47□□□□□ -0.25
CLN6-217ENST00000636964 B4E1Z4 1266 aa13.47□□□□□ -0.25
CLN6-217ENST00000636964 PDIA3P30101 505 aaKnown RBP13.47□□□□□ -0.25
CLN6-217ENST00000636964 DNM1Q05193 864 aaKnown RBP13.47□□□□□ -0.25
CLN6-217ENST00000636964 TRDNQ13061 729 aa13.47□□□□□ -0.25
CLN6-217ENST00000636964 GRAPQ13588 217 aa13.47□□□□□ -0.25
CLN6-217ENST00000636964 GRAPLQ8TC17 118 aaPredicted RBP13.47□□□□□ -0.25
CLN6-217ENST00000636964 UBR3Q6ZT12 1888 aa13.47□□□□□ -0.25
CLN6-217ENST00000636964 PFKFB2O60825 505 aa13.47□□□□□ -0.25
CLN6-217ENST00000636964 AGXT2Q9BYV1 514 aa13.47□□□□□ -0.25
CLN6-217ENST00000636964 FIBPO43427 364 aa13.46□□□□□ -0.25
CLN6-217ENST00000636964 GTF2F1P35269 517 aaKnown RBP eCLIP13.46□□□□□ -0.252e-6■■■□□ 14.6
CLN6-217ENST00000636964 TDO2P48775 406 aa13.46□□□□□ -0.25
CLN6-217ENST00000636964 DYNLL1P63167 89 aaKnown RBP13.46□□□□□ -0.25
CLN6-217ENST00000636964 CYB5R4Q7L1T6 521 aa13.46□□□□□ -0.25
CLN6-217ENST00000636964 CTDNEP1O95476 244 aa13.46□□□□□ -0.25
CLN6-217ENST00000636964 ST5P78524 1137 aa13.46□□□□□ -0.25
CLN6-217ENST00000636964 ZNF384Q8TF68 577 aa13.46□□□□□ -0.25
CLN6-217ENST00000636964 SMIM22K7EJ46 135 aa13.46□□□□□ -0.26
CLN6-217ENST00000636964 ZBTB22O15209 634 aa13.46□□□□□ -0.26
CLN6-217ENST00000636964 RRP12Q5JTH9 1297 aaKnown RBP13.46□□□□□ -0.26
CLN6-217ENST00000636964 TOMM22Q9NS69 142 aa13.46□□□□□ -0.26
CLN6-217ENST00000636964 TACC3Q9Y6A5 838 aa13.46□□□□□ -0.26
CLN6-217ENST00000636964 NEDD4P46934 1319 aa13.45□□□□□ -0.26
CLN6-217ENST00000636964 KLF18A0A0U1RQI7 1052 aa13.45□□□□□ -0.26
CLN6-217ENST00000636964 PSEN1P49768 467 aa13.45□□□□□ -0.26
CLN6-217ENST00000636964 FAM184AQ8NB25 1140 aa13.45□□□□□ -0.26
CLN6-217ENST00000636964 MAGEB6P1A0A0J9YX57 407 aa13.45□□□□□ -0.26
CLN6-217ENST00000636964 RXRBP28702 533 aa13.45□□□□□ -0.26
CLN6-217ENST00000636964 PRDX5P30044 214 aa13.45□□□□□ -0.26
CLN6-217ENST00000636964 NAA16Q6N069 864 aaPredicted RBP13.45□□□□□ -0.26
CLN6-217ENST00000636964 COL23A1Q86Y22 540 aaPredicted RBP13.45□□□□□ -0.26
CLN6-217ENST00000636964 NSUN7Q8NE18 718 aaKnown RBP13.45□□□□□ -0.26
CLN6-217ENST00000636964 PRDM16Q9HAZ2 1276 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms