RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 KIF13BQ9NQT8 1826 aa19.96■□□□□ 0.79
CLN3-252ENST00000636907 NUCB2P80303 420 aa19.95■□□□□ 0.78
CLN3-252ENST00000636907 CTDSPL2Q05D32 466 aa19.95■□□□□ 0.78
CLN3-252ENST00000636907 PKP1Q13835 747 aa19.95■□□□□ 0.78
CLN3-252ENST00000636907 UPF1Q92900 1129 aaKnown RBP eCLIP19.95■□□□□ 0.78
CLN3-252ENST00000636907 ATF5Q9Y2D1 282 aaPredicted RBP19.95■□□□□ 0.78
CLN3-252ENST00000636907 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.95■□□□□ 0.78
CLN3-252ENST00000636907 NEDD4P46934 1319 aa19.95■□□□□ 0.78
CLN3-252ENST00000636907 DPEP1P16444 411 aa19.94■□□□□ 0.78
CLN3-252ENST00000636907 MCM5P33992 734 aa19.94■□□□□ 0.78
CLN3-252ENST00000636907 ANTXR2P58335 489 aa19.94■□□□□ 0.78
CLN3-252ENST00000636907 TRDNQ13061 729 aa19.94■□□□□ 0.78
CLN3-252ENST00000636907 TTLL6Q8N841 843 aa19.94■□□□□ 0.78
CLN3-252ENST00000636907 NKX2-3Q8TAU0 364 aa19.94■□□□□ 0.78
CLN3-252ENST00000636907 TNPO1Q92973 898 aaKnown RBP19.94■□□□□ 0.78
CLN3-252ENST00000636907 CRNKL1Q9BZJ0 848 aaKnown RBP19.94■□□□□ 0.78
CLN3-252ENST00000636907 MTFR1LQ9H019 292 aa19.94■□□□□ 0.78
CLN3-252ENST00000636907 INCENPQ9NQS7 918 aa19.94■□□□□ 0.78
CLN3-252ENST00000636907 TACC3Q9Y6A5 838 aa19.94■□□□□ 0.78
CLN3-252ENST00000636907 MROH7-TTC4A0A0A0MT08 1334 aa19.94■□□□□ 0.78
CLN3-252ENST00000636907 PRC1O43663 620 aa19.94■□□□□ 0.78
CLN3-252ENST00000636907 KCNA3P22001 575 aa19.94■□□□□ 0.78
CLN3-252ENST00000636907 PPARAQ07869 468 aa19.94■□□□□ 0.78
CLN3-252ENST00000636907 R3HDM1Q15032 1099 aaKnown RBP19.94■□□□□ 0.78
CLN3-252ENST00000636907 CC2D2BQ6DHV5 1058 aa19.94■□□□□ 0.78
CLN3-252ENST00000636907 FBXL16Q8N461 479 aa19.94■□□□□ 0.78
CLN3-252ENST00000636907 G3V3G9 751 aa19.93■□□□□ 0.78
CLN3-252ENST00000636907 C21orf2O43822 256 aa19.93■□□□□ 0.78
CLN3-252ENST00000636907 LDHCP07864 332 aa19.93■□□□□ 0.78
CLN3-252ENST00000636907 APOBRQ0VD83 1088 aa19.93■□□□□ 0.78
CLN3-252ENST00000636907 STK3Q13188 491 aa19.93■□□□□ 0.78
CLN3-252ENST00000636907 AKNAD1Q5T1N1 836 aa19.93■□□□□ 0.78
CLN3-252ENST00000636907 DCAF8Q5TAQ9 597 aa19.93■□□□□ 0.78
CLN3-252ENST00000636907 GIMAP6Q6P9H5 292 aa19.93■□□□□ 0.78
CLN3-252ENST00000636907 FBXW7Q969H0 707 aa19.93■□□□□ 0.78
CLN3-252ENST00000636907 MYH2Q9UKX2 1941 aa19.92■□□□□ 0.78
CLN3-252ENST00000636907 WDR19Q8NEZ3 1342 aa19.92■□□□□ 0.78
CLN3-252ENST00000636907 MINDY4BA8MYZ0 360 aa19.92■□□□□ 0.78
CLN3-252ENST00000636907 B4E1Z4 1266 aa19.92■□□□□ 0.78
CLN3-252ENST00000636907 CYB5R4Q7L1T6 521 aa19.92■□□□□ 0.78
CLN3-252ENST00000636907 STAG1Q8WVM7 1258 aa19.92■□□□□ 0.78
CLN3-252ENST00000636907 DBNDD1Q9H9R9 158 aa19.92■□□□□ 0.78
CLN3-252ENST00000636907 GPHNQ9NQX3 736 aaPredicted RBP19.92■□□□□ 0.78
CLN3-252ENST00000636907 SMC3Q9UQE7 1217 aa19.92■□□□□ 0.78
CLN3-252ENST00000636907 BAZ2AQ9UIF9 1905 aaKnown RBP19.91■□□□□ 0.78
CLN3-252ENST00000636907 POLD1P28340 1107 aa19.91■□□□□ 0.78
CLN3-252ENST00000636907 PPP4CP60510 307 aa19.91■□□□□ 0.78
CLN3-252ENST00000636907 MFSD6Q6ZSS7 791 aa19.91■□□□□ 0.78
CLN3-252ENST00000636907 PODNQ7Z5L7 613 aa19.91■□□□□ 0.78
CLN3-252ENST00000636907 GTF3C6Q969F1 213 aa19.91■□□□□ 0.78
CLN3-252ENST00000636907 DCP1AQ9NPI6 582 aaPredicted RBP19.91■□□□□ 0.78
CLN3-252ENST00000636907 ATP8A2Q9NTI2 1148 aa19.91■□□□□ 0.78
CLN3-252ENST00000636907 ANAPC4Q9UJX5 808 aa19.91■□□□□ 0.78
CLN3-252ENST00000636907 ZDHHC9Q9Y397 364 aa19.91■□□□□ 0.78
CLN3-252ENST00000636907 BAG3O95817 575 aa19.91■□□□□ 0.78
CLN3-252ENST00000636907 CERS5Q8N5B7 392 aa19.91■□□□□ 0.78
CLN3-252ENST00000636907 CYP2D7A0A087X1C5 515 aa19.9■□□□□ 0.78
CLN3-252ENST00000636907 SMIM22K7EJ46 135 aa19.9■□□□□ 0.78
CLN3-252ENST00000636907 DTNBO60941 627 aa19.9■□□□□ 0.78
CLN3-252ENST00000636907 CTR9Q6PD62 1173 aa19.9■□□□□ 0.78
CLN3-252ENST00000636907 STK11IPQ8N1F8 1099 aa19.9■□□□□ 0.78
CLN3-252ENST00000636907 SH3RF3Q8TEJ3 882 aaPredicted RBP19.9■□□□□ 0.78
CLN3-252ENST00000636907 NOL10Q9BSC4 688 aaKnown RBP19.9■□□□□ 0.78
CLN3-252ENST00000636907 MXD3Q9BW11 206 aa19.9■□□□□ 0.78
CLN3-252ENST00000636907 CNNM2Q9H8M5 875 aa19.9■□□□□ 0.78
CLN3-252ENST00000636907 SUGT1Q9Y2Z0 365 aa19.9■□□□□ 0.78
CLN3-252ENST00000636907 ECE2O60344 883 aa19.89■□□□□ 0.77
CLN3-252ENST00000636907 PFKFB2O60825 505 aa19.89■□□□□ 0.77
CLN3-252ENST00000636907 GJB2P29033 226 aa19.89■□□□□ 0.77
CLN3-252ENST00000636907 BTDP43251 543 aa19.89■□□□□ 0.77
CLN3-252ENST00000636907 AOC3Q16853 763 aa19.89■□□□□ 0.77
CLN3-252ENST00000636907 SLF2Q8IX21 1173 aa19.89■□□□□ 0.77
CLN3-252ENST00000636907 SUPT20HQ8NEM7 779 aa19.89■□□□□ 0.77
CLN3-252ENST00000636907 FAM163AQ96GL9 167 aaPredicted RBP19.89■□□□□ 0.77
CLN3-252ENST00000636907 KRT23Q9C075 422 aa19.89■□□□□ 0.77
CLN3-252ENST00000636907 KCNQ5Q9NR82 932 aa19.89■□□□□ 0.77
CLN3-252ENST00000636907 GAKO14976 1311 aa19.89■□□□□ 0.77
CLN3-252ENST00000636907 GPR75-ASB3A0A0A6YYF3 556 aa19.88■□□□□ 0.77
CLN3-252ENST00000636907 USP17L12C9JPN9 530 aa19.88■□□□□ 0.77
CLN3-252ENST00000636907 USP17L21D6R901 530 aa19.88■□□□□ 0.77
CLN3-252ENST00000636907 EVCP57679 992 aa19.88■□□□□ 0.77
CLN3-252ENST00000636907 KIAA2012Q0VF49 1180 aa19.88■□□□□ 0.77
CLN3-252ENST00000636907 CCDC93Q567U6 631 aa19.88■□□□□ 0.77
CLN3-252ENST00000636907 RNF41Q9H4P4 317 aaPredicted RBP19.88■□□□□ 0.77
CLN3-252ENST00000636907 LAMB1P07942 1786 aa19.88■□□□□ 0.77
CLN3-252ENST00000636907 KDM4AO75164 1064 aa19.87■□□□□ 0.77
CLN3-252ENST00000636907 BRD1O95696 1058 aa19.87■□□□□ 0.77
CLN3-252ENST00000636907 TGFB2P61812 414 aa19.87■□□□□ 0.77
CLN3-252ENST00000636907 SCRN1Q12765 414 aa19.87■□□□□ 0.77
CLN3-252ENST00000636907 GRIPAP1Q4V328 841 aa19.87■□□□□ 0.77
CLN3-252ENST00000636907 RRP12Q5JTH9 1297 aaKnown RBP19.87■□□□□ 0.77
CLN3-252ENST00000636907 ZNF274Q96GC6 653 aaPredicted RBP19.87■□□□□ 0.77
CLN3-252ENST00000636907 MKRN1Q9UHC7 482 aaKnown RBP19.87■□□□□ 0.77
CLN3-252ENST00000636907 F8W031 263 aaPredicted RBP19.87■□□□□ 0.77
CLN3-252ENST00000636907 SH2B2O14492 632 aaPredicted RBP19.87■□□□□ 0.77
CLN3-252ENST00000636907 PDIA3P30101 505 aaKnown RBP19.87■□□□□ 0.77
CLN3-252ENST00000636907 USP5P45974 858 aa19.87■□□□□ 0.77
CLN3-252ENST00000636907 CERS3Q8IU89 383 aa19.87■□□□□ 0.77
CLN3-252ENST00000636907 TOMM22Q9NS69 142 aa19.87■□□□□ 0.77
CLN3-252ENST00000636907 ZSWIM5Q9P217 1185 aa19.87■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms