RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 COL18A1P39060 1754 aa16.79■□□□□ 0.28
SHROOM1-208ENST00000617339 BCL9O00512 1426 aa16.79■□□□□ 0.28
SHROOM1-208ENST00000617339 RANBP6O60518 1105 aaKnown RBP16.79■□□□□ 0.28
SHROOM1-208ENST00000617339 PFKFB2O60825 505 aa16.79■□□□□ 0.28
SHROOM1-208ENST00000617339 EVX2Q03828 476 aa16.79■□□□□ 0.28
SHROOM1-208ENST00000617339 TBC1D9BQ66K14 1250 aa16.79■□□□□ 0.28
SHROOM1-208ENST00000617339 SYNE3Q6ZMZ3 975 aa16.79■□□□□ 0.28
SHROOM1-208ENST00000617339 HSP90AA4PQ58FG1 418 aa16.79■□□□□ 0.28
SHROOM1-208ENST00000617339 SLC26A6Q9BXS9 759 aa16.79■□□□□ 0.28
SHROOM1-208ENST00000617339 CAMTA2O94983 1202 aa16.78■□□□□ 0.28
SHROOM1-208ENST00000617339 METAP2P50579 478 aaKnown RBP eCLIP16.78■□□□□ 0.28
SHROOM1-208ENST00000617339 ANTXR2P58335 489 aa16.78■□□□□ 0.28
SHROOM1-208ENST00000617339 ANKRD18AQ8IVF6 992 aa16.78■□□□□ 0.28
SHROOM1-208ENST00000617339 FSIP1Q8NA03 581 aa16.78■□□□□ 0.28
SHROOM1-208ENST00000617339 TRMT1Q9NXH9 659 aaKnown RBP16.78■□□□□ 0.28
SHROOM1-208ENST00000617339 EXOSC10Q01780 885 aaKnown RBP16.78■□□□□ 0.28
SHROOM1-208ENST00000617339 SMARCC1Q92922 1105 aaPredicted RBP16.78■□□□□ 0.28
SHROOM1-208ENST00000617339 AFDNP55196 1824 aaKnown RBP16.78■□□□□ 0.28
SHROOM1-208ENST00000617339 TRIM37O94972 964 aa16.77■□□□□ 0.28
SHROOM1-208ENST00000617339 ZFYP08048 801 aaPredicted RBP16.77■□□□□ 0.28
SHROOM1-208ENST00000617339 SLFN14P0C7P3 912 aa16.77■□□□□ 0.28
SHROOM1-208ENST00000617339 CLIC4Q9Y696 253 aa16.77■□□□□ 0.28
SHROOM1-208ENST00000617339 TPM3P06753 285 aa16.77■□□□□ 0.28
SHROOM1-208ENST00000617339 FDPSP14324 419 aaKnown RBP16.77■□□□□ 0.28
SHROOM1-208ENST00000617339 CCDC73Q6ZRK6 1079 aa16.77■□□□□ 0.28
SHROOM1-208ENST00000617339 AMIGO3Q86WK7 504 aa16.77■□□□□ 0.28
SHROOM1-208ENST00000617339 IFNL3Q8IZI9 196 aa16.77■□□□□ 0.28
SHROOM1-208ENST00000617339 BAZ2BQ9UIF8 2168 aaKnown RBP16.77■□□□□ 0.27
SHROOM1-208ENST00000617339 KCPQ6ZWJ8 1503 aa16.77■□□□□ 0.27
SHROOM1-208ENST00000617339 NEDD4P46934 1319 aa16.77■□□□□ 0.27
SHROOM1-208ENST00000617339 SMTNL1A8MU46 457 aa16.77■□□□□ 0.27
SHROOM1-208ENST00000617339 TYRO3Q06418 890 aa16.77■□□□□ 0.27
SHROOM1-208ENST00000617339 ZSCAN25Q6NSZ9 544 aa16.77■□□□□ 0.27
SHROOM1-208ENST00000617339 QTRT2Q9H974 415 aaKnown RBP16.77■□□□□ 0.27
SHROOM1-208ENST00000617339 ZSWIM5Q9P217 1185 aa16.77■□□□□ 0.27
SHROOM1-208ENST00000617339 KCNJ14Q9UNX9 436 aa16.77■□□□□ 0.27
SHROOM1-208ENST00000617339 CCDC69A6NI79 296 aa16.76■□□□□ 0.27
SHROOM1-208ENST00000617339 C6orf229H3BNL8 230 aa16.76■□□□□ 0.27
SHROOM1-208ENST00000617339 GOLGA8AA7E2F4 631 aa16.76■□□□□ 0.27
SHROOM1-208ENST00000617339 IRX5P78411 483 aaPredicted RBP16.76■□□□□ 0.27
SHROOM1-208ENST00000617339 RESTQ13127 1097 aa16.76■□□□□ 0.27
SHROOM1-208ENST00000617339 ARID5BQ14865 1188 aa16.76■□□□□ 0.27
SHROOM1-208ENST00000617339 PTPN21Q16825 1174 aa16.76■□□□□ 0.27
SHROOM1-208ENST00000617339 NLRP3Q96P20 1036 aa16.76■□□□□ 0.27
SHROOM1-208ENST00000617339 ALG1Q9BT22 464 aa16.76■□□□□ 0.27
SHROOM1-208ENST00000617339 FUCA2Q9BTY2 467 aa16.76■□□□□ 0.27
SHROOM1-208ENST00000617339 MFSD6Q6ZSS7 791 aa16.76■□□□□ 0.27
SHROOM1-208ENST00000617339 DDX41Q9UJV9 622 aaKnown RBP16.76■□□□□ 0.27
SHROOM1-208ENST00000617339 CFAP45Q9UL16 551 aa16.76■□□□□ 0.27
SHROOM1-208ENST00000617339 CDC27P30260 824 aa16.75■□□□□ 0.27
SHROOM1-208ENST00000617339 TSGA10IPQ3SY00 556 aa16.75■□□□□ 0.27
SHROOM1-208ENST00000617339 TAF3Q5VWG9 929 aa16.75■□□□□ 0.27
SHROOM1-208ENST00000617339 SLC12A7Q9Y666 1083 aa16.75■□□□□ 0.27
SHROOM1-208ENST00000617339 KINO60870 393 aaKnown RBP16.75■□□□□ 0.27
SHROOM1-208ENST00000617339 ADGRA1Q86SQ6 560 aa16.75■□□□□ 0.27
SHROOM1-208ENST00000617339 FAM200AQ8TCP9 573 aa16.75■□□□□ 0.27
SHROOM1-208ENST00000617339 STRBPQ96SI9 672 aaKnown RBP16.75■□□□□ 0.27
SHROOM1-208ENST00000617339 AATFQ9NY61 560 aaKnown RBP eCLIP16.75■□□□□ 0.27
SHROOM1-208ENST00000617339 TTF1Q15361 905 aaPredicted RBP16.75■□□□□ 0.27
SHROOM1-208ENST00000617339 KIF18AQ8NI77 898 aa16.75■□□□□ 0.27
SHROOM1-208ENST00000617339 ZNF215Q9UL58 517 aaPredicted RBP16.75■□□□□ 0.27
SHROOM1-208ENST00000617339 BECN2A8MW95 431 aa16.74■□□□□ 0.27
SHROOM1-208ENST00000617339 F8W031 263 aaPredicted RBP16.74■□□□□ 0.27
SHROOM1-208ENST00000617339 HSPA1LP34931 641 aa16.74■□□□□ 0.27
SHROOM1-208ENST00000617339 CEP135Q66GS9 1140 aa16.74■□□□□ 0.27
SHROOM1-208ENST00000617339 MSL1Q68DK7 614 aa16.74■□□□□ 0.27
SHROOM1-208ENST00000617339 CBX8Q9HC52 389 aa16.74■□□□□ 0.27
SHROOM1-208ENST00000617339 GNL3LQ9NVN8 582 aaKnown RBP16.74■□□□□ 0.27
SHROOM1-208ENST00000617339 USP54Q70EL1 1684 aa16.74■□□□□ 0.27
SHROOM1-208ENST00000617339 MRC1P22897 1456 aa16.74■□□□□ 0.27
SHROOM1-208ENST00000617339 ZBTB43O43298 467 aa16.74■□□□□ 0.27
SHROOM1-208ENST00000617339 UQCRFS1P1P0C7P4 283 aa16.74■□□□□ 0.27
SHROOM1-208ENST00000617339 ZNF165P49910 485 aa16.74■□□□□ 0.27
SHROOM1-208ENST00000617339 KRT222Q8N1A0 295 aa16.74■□□□□ 0.27
SHROOM1-208ENST00000617339 CDC5LQ99459 802 aaKnown RBP16.74■□□□□ 0.27
SHROOM1-208ENST00000617339 CLIP2Q9UDT6 1046 aa16.74■□□□□ 0.27
SHROOM1-208ENST00000617339 USP27XA6NNY8 438 aa16.74■□□□□ 0.27
SHROOM1-208ENST00000617339 ERVV-1B6SEH8 477 aa16.74■□□□□ 0.27
SHROOM1-208ENST00000617339 GABPB1Q06547 395 aaPredicted RBP16.74■□□□□ 0.27
SHROOM1-208ENST00000617339 ELF2Q15723 593 aa16.74■□□□□ 0.27
SHROOM1-208ENST00000617339 CAVIN4Q5BKX8 364 aa16.74■□□□□ 0.27
SHROOM1-208ENST00000617339 PDILTQ8N807 584 aa16.74■□□□□ 0.27
SHROOM1-208ENST00000617339 VGLL2Q8N8G2 317 aa16.74■□□□□ 0.27
SHROOM1-208ENST00000617339 NBPF3Q9H094 633 aa16.74■□□□□ 0.27
SHROOM1-208ENST00000617339 EPB41L4AQ9HCS5 686 aaPredicted RBP16.74■□□□□ 0.27
SHROOM1-208ENST00000617339 MRVI1Q9Y6F6 885 aa16.74■□□□□ 0.27
SHROOM1-208ENST00000617339 TMEM87AQ8NBN3 555 aa16.73■□□□□ 0.27
SHROOM1-208ENST00000617339 CACTINQ8WUQ7 758 aaKnown RBP16.73■□□□□ 0.27
SHROOM1-208ENST00000617339 GOLPH3LQ9H4A5 285 aa16.73■□□□□ 0.27
SHROOM1-208ENST00000617339 ANGEL1Q9UNK9 670 aaKnown RBP16.73■□□□□ 0.27
SHROOM1-208ENST00000617339 KIF28PB7ZC32 967 aa16.73■□□□□ 0.27
SHROOM1-208ENST00000617339 TERF2Q15554 542 aa16.73■□□□□ 0.27
SHROOM1-208ENST00000617339 FILIP1Q7Z7B0 1213 aa16.73■□□□□ 0.27
SHROOM1-208ENST00000617339 TXNRD3Q86VQ6 643 aa16.73■□□□□ 0.27
SHROOM1-208ENST00000617339 IARSP41252 1262 aaKnown RBP16.72■□□□□ 0.27
SHROOM1-208ENST00000617339 KMT5BQ4FZB7 885 aa16.72■□□□□ 0.27
SHROOM1-208ENST00000617339 FAM47AQ5JRC9 791 aa16.72■□□□□ 0.27
SHROOM1-208ENST00000617339 FAM196AQ6ZSG2 479 aa16.72■□□□□ 0.27
SHROOM1-208ENST00000617339 RPGRQ92834 1020 aaKnown RBP16.72■□□□□ 0.27
SHROOM1-208ENST00000617339 IL17RAQ96F46 866 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms