RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 BTDP43251 543 aa20.11■□□□□ 0.81
CCDC28A-202ENST00000611852 MAP3K12Q12852 859 aa20.11■□□□□ 0.81
CCDC28A-202ENST00000611852 CST9Q5W186 159 aa20.11■□□□□ 0.81
CCDC28A-202ENST00000611852 CDCA5Q96FF9 252 aa20.11■□□□□ 0.81
CCDC28A-202ENST00000611852 STAP2Q9UGK3 403 aa20.11■□□□□ 0.81
CCDC28A-202ENST00000611852 CACNB3P54284 484 aa20.1■□□□□ 0.81
CCDC28A-202ENST00000611852 PDE1AP54750 535 aa20.1■□□□□ 0.81
CCDC28A-202ENST00000611852 TNFAIP1Q13829 316 aa20.1■□□□□ 0.81
CCDC28A-202ENST00000611852 ADGRA1Q86SQ6 560 aa20.1■□□□□ 0.81
CCDC28A-202ENST00000611852 USP40Q9NVE5 1235 aa20.1■□□□□ 0.81
CCDC28A-202ENST00000611852 TMOD2Q9NZR1 351 aa20.1■□□□□ 0.81
CCDC28A-202ENST00000611852 TMEM88BA6NKF7 163 aa20.09■□□□□ 0.81
CCDC28A-202ENST00000611852 TCP10L2B9ZVM9 353 aa20.09■□□□□ 0.81
CCDC28A-202ENST00000611852 GLRX3O76003 335 aaKnown RBP20.09■□□□□ 0.81
CCDC28A-202ENST00000611852 CELF2O95319 508 aaKnown RBP20.09■□□□□ 0.81
CCDC28A-202ENST00000611852 FKBP1CQ5VVH2 108 aa20.09■□□□□ 0.81
CCDC28A-202ENST00000611852 PRAMEF18Q5VWM3 479 aa20.09■□□□□ 0.81
CCDC28A-202ENST00000611852 MAGEB6Q8N7X4 407 aa20.09■□□□□ 0.81
CCDC28A-202ENST00000611852 ZNF408Q9H9D4 720 aa20.09■□□□□ 0.81
CCDC28A-202ENST00000611852 PPP2R3BQ9Y5P8 575 aa20.09■□□□□ 0.81
CCDC28A-202ENST00000611852 RASA3Q14644 834 aa20.08■□□□□ 0.81
CCDC28A-202ENST00000611852 TMED8Q6PL24 325 aaPredicted RBP20.08■□□□□ 0.81
CCDC28A-202ENST00000611852 CYP7A1P22680 504 aa20.07■□□□□ 0.8
CCDC28A-202ENST00000611852 RHBDL3P58872 404 aa20.07■□□□□ 0.8
CCDC28A-202ENST00000611852 SLC9C2Q5TAH2 1124 aa20.07■□□□□ 0.8
CCDC28A-202ENST00000611852 CREBZFQ9NS37 354 aa20.07■□□□□ 0.8
CCDC28A-202ENST00000611852 CNTNAP1P78357 1384 aa20.07■□□□□ 0.8
CCDC28A-202ENST00000611852 PDE6AP16499 860 aa20.07■□□□□ 0.8
CCDC28A-202ENST00000611852 TNNI2P48788 182 aa20.07■□□□□ 0.8
CCDC28A-202ENST00000611852 HTRA3P83110 453 aa20.07■□□□□ 0.8
CCDC28A-202ENST00000611852 NFIAQ12857 509 aa20.07■□□□□ 0.8
CCDC28A-202ENST00000611852 FAM83AQ86UY5 434 aa20.07■□□□□ 0.8
CCDC28A-202ENST00000611852 PLEKHM2Q8IWE5 1019 aa20.07■□□□□ 0.8
CCDC28A-202ENST00000611852 PPP4CP60510 307 aa20.06■□□□□ 0.8
CCDC28A-202ENST00000611852 TMEM39BQ9GZU3 492 aa20.06■□□□□ 0.8
CCDC28A-202ENST00000611852 AATFQ9NY61 560 aaKnown RBP eCLIP20.06■□□□□ 0.8
CCDC28A-202ENST00000611852 RFX7Q2KHR2 1363 aa20.06■□□□□ 0.8
CCDC28A-202ENST00000611852 WDHD1O75717 1129 aaPredicted RBP20.05■□□□□ 0.8
CCDC28A-202ENST00000611852 BAG3O95817 575 aa20.05■□□□□ 0.8
CCDC28A-202ENST00000611852 MAP4K4O95819 1239 aaPredicted RBP20.05■□□□□ 0.8
CCDC28A-202ENST00000611852 KBTBD3Q8NAB2 608 aa20.05■□□□□ 0.8
CCDC28A-202ENST00000611852 TEPSINQ96N21 525 aa20.05■□□□□ 0.8
CCDC28A-202ENST00000611852 NOL10Q9BSC4 688 aaKnown RBP20.05■□□□□ 0.8
CCDC28A-202ENST00000611852 IDI2Q9BXS1 227 aa20.05■□□□□ 0.8
CCDC28A-202ENST00000611852 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.05■□□□□ 0.8
CCDC28A-202ENST00000611852 OSBPL3Q9H4L5 887 aa20.05■□□□□ 0.8
CCDC28A-202ENST00000611852 FAM198AQ9UFP1 575 aa20.05■□□□□ 0.8
CCDC28A-202ENST00000611852 TCRBV5S4A2TA0A5A2 114 aa20.04■□□□□ 0.8
CCDC28A-202ENST00000611852 PDE4AP27815 886 aa20.04■□□□□ 0.8
CCDC28A-202ENST00000611852 CDAN1Q8IWY9 1227 aa20.04■□□□□ 0.8
CCDC28A-202ENST00000611852 ZNF532Q9HCE3 1301 aa20.04■□□□□ 0.8
CCDC28A-202ENST00000611852 ADD2P35612 726 aa20.03■□□□□ 0.8
CCDC28A-202ENST00000611852 TCP10Q12799 353 aa20.03■□□□□ 0.8
CCDC28A-202ENST00000611852 NBPF12Q5TAG4 269 aaPredicted RBP20.03■□□□□ 0.8
CCDC28A-202ENST00000611852 CENPQQ7L2Z9 268 aaPredicted RBP20.03■□□□□ 0.8
CCDC28A-202ENST00000611852 MIGA1Q8NAN2 632 aa20.03■□□□□ 0.8
CCDC28A-202ENST00000611852 SH3RF3Q8TEJ3 882 aaPredicted RBP20.03■□□□□ 0.8
CCDC28A-202ENST00000611852 FAM151AQ8WW52 585 aa20.03■□□□□ 0.8
CCDC28A-202ENST00000611852 GBA2Q9HCG7 927 aaPredicted RBP20.03■□□□□ 0.8
CCDC28A-202ENST00000611852 MYH7P12883 1935 aa20.03■□□□□ 0.8
CCDC28A-202ENST00000611852 CHGBP05060 677 aa20.02■□□□□ 0.8
CCDC28A-202ENST00000611852 PLCG2P16885 1265 aa20.02■□□□□ 0.8
CCDC28A-202ENST00000611852 NF2P35240 595 aa20.02■□□□□ 0.8
CCDC28A-202ENST00000611852 RGS3P49796 1198 aa20.02■□□□□ 0.8
CCDC28A-202ENST00000611852 DYNLL1P63167 89 aaKnown RBP20.02■□□□□ 0.8
CCDC28A-202ENST00000611852 CCDC136Q96JN2 1154 aa20.02■□□□□ 0.8
CCDC28A-202ENST00000611852 DDX4Q9NQI0 724 aaKnown RBP20.02■□□□□ 0.8
CCDC28A-202ENST00000611852 SSC5DA1L4H1 1573 aa20.02■□□□□ 0.8
CCDC28A-202ENST00000611852 RPAP1Q9BWH6 1393 aaPredicted RBP20.02■□□□□ 0.79
CCDC28A-202ENST00000611852 ENTPD3O75355 529 aa20.02■□□□□ 0.79
CCDC28A-202ENST00000611852 UBE3CQ15386 1083 aa20.02■□□□□ 0.79
CCDC28A-202ENST00000611852 SUPT20HL1Q3ZLR7 823 aa20.02■□□□□ 0.79
CCDC28A-202ENST00000611852 SLFNL1Q499Z3 407 aa20.02■□□□□ 0.79
CCDC28A-202ENST00000611852 ERICH6BQ5W0A0 696 aa20.02■□□□□ 0.79
CCDC28A-202ENST00000611852 ZSCAN25Q6NSZ9 544 aa20.02■□□□□ 0.79
CCDC28A-202ENST00000611852 SAPCD2Q86UD0 394 aa20.02■□□□□ 0.79
CCDC28A-202ENST00000611852 TEX11Q8IYF3 940 aa20.02■□□□□ 0.79
CCDC28A-202ENST00000611852 C2orf69Q8N8R5 385 aa20.02■□□□□ 0.79
CCDC28A-202ENST00000611852 ABT1Q9ULW3 272 aaKnown RBP20.02■□□□□ 0.79
CCDC28A-202ENST00000611852 TLL2Q9Y6L7 1015 aa20.02■□□□□ 0.79
CCDC28A-202ENST00000611852 NPM3O75607 178 aaKnown RBP20.01■□□□□ 0.79
CCDC28A-202ENST00000611852 FKBP1BP68106 108 aa20.01■□□□□ 0.79
CCDC28A-202ENST00000611852 PICALMQ13492 652 aa20.01■□□□□ 0.79
CCDC28A-202ENST00000611852 CERS3Q8IU89 383 aa20.01■□□□□ 0.79
CCDC28A-202ENST00000611852 ZFPM1Q8IX07 1006 aa20.01■□□□□ 0.79
CCDC28A-202ENST00000611852 RIOK1Q9BRS2 568 aaKnown RBP20.01■□□□□ 0.79
CCDC28A-202ENST00000611852 PAPPA2Q9BXP8 1791 aa20■□□□□ 0.79
CCDC28A-202ENST00000611852 MAGEB6P1A0A0J9YX57 407 aa19.99■□□□□ 0.79
CCDC28A-202ENST00000611852 MOB2Q70IA6 237 aa19.99■□□□□ 0.79
CCDC28A-202ENST00000611852 EVI5LQ96CN4 794 aa19.99■□□□□ 0.79
CCDC28A-202ENST00000611852 FSD1Q9BTV5 496 aa19.99■□□□□ 0.79
CCDC28A-202ENST00000611852 CDK5RAP2Q96SN8 1893 aa19.99■□□□□ 0.79
CCDC28A-202ENST00000611852 RASSF10A6NK89 507 aa19.98■□□□□ 0.79
CCDC28A-202ENST00000611852 RNF113AO15541 343 aaKnown RBP19.98■□□□□ 0.79
CCDC28A-202ENST00000611852 ZFYP08048 801 aaPredicted RBP19.98■□□□□ 0.79
CCDC28A-202ENST00000611852 HUNKP57058 714 aa19.98■□□□□ 0.79
CCDC28A-202ENST00000611852 PRKG1Q13976 671 aa19.98■□□□□ 0.79
CCDC28A-202ENST00000611852 TGFBRAP1Q8WUH2 860 aa19.98■□□□□ 0.79
CCDC28A-202ENST00000611852 FZD1Q9UP38 647 aa19.98■□□□□ 0.79
CCDC28A-202ENST00000611852 FOCADQ5VW36 1801 aa19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms