RNA–Protein interactions for RNA: ENST00000611659.4

TPM3-223, Transcript of tropomyosin 3, human

TSL 3 BASIC

Gene TPM3, Length 3,149 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM3-223	ENST00000611659	FOXN1	O15353	648 aa		13.71	□□□□□ -0.21
TPM3-223	ENST00000611659	CDC27	P30260	824 aa		13.71	□□□□□ -0.21
TPM3-223	ENST00000611659	PDE4B	Q07343	736 aa		13.71	□□□□□ -0.21
TPM3-223	ENST00000611659	LONRF3	Q496Y0	759 aa		13.71	□□□□□ -0.21
TPM3-223	ENST00000611659	TRMT44	Q8IYL2	757 aa	Known RBP	13.71	□□□□□ -0.21
TPM3-223	ENST00000611659	OSBP2	Q969R2	916 aa		13.71	□□□□□ -0.21
TPM3-223	ENST00000611659	MTF1	Q14872	753 aa		13.7	□□□□□ -0.22
TPM3-223	ENST00000611659	RSRC2	Q7L4I2	434 aa	Known RBP	13.7	□□□□□ -0.22
TPM3-223	ENST00000611659	VPS37D	Q86XT2	251 aa		13.7	□□□□□ -0.22
TPM3-223	ENST00000611659	ALG1	Q9BT22	464 aa		13.7	□□□□□ -0.22
TPM3-223	ENST00000611659	HPS5	Q9UPZ3	1129 aa		13.7	□□□□□ -0.22
TPM3-223	ENST00000611659	HEG1	Q9ULI3	1381 aa		13.7	□□□□□ -0.22
TPM3-223	ENST00000611659	TXLNA	P40222	546 aa		13.7	□□□□□ -0.22
TPM3-223	ENST00000611659	CCDC102B	Q68D86	513 aa		13.7	□□□□□ -0.22
TPM3-223	ENST00000611659	METTL16	Q86W50	562 aa	Known RBP	13.7	□□□□□ -0.22
TPM3-223	ENST00000611659	JMY	Q8N9B5	988 aa		13.7	□□□□□ -0.22
TPM3-223	ENST00000611659	PDE11A	Q9HCR9	933 aa		13.7	□□□□□ -0.22
TPM3-223	ENST00000611659	ZNF827	Q17R98	1081 aa		13.7	□□□□□ -0.22
TPM3-223	ENST00000611659	CERS3	Q8IU89	383 aa		13.7	□□□□□ -0.22
TPM3-223	ENST00000611659	FOXP4	Q8IVH2	680 aa	Predicted RBP	13.7	□□□□□ -0.22
TPM3-223	ENST00000611659	NFE2L3	Q9Y4A8	694 aa		13.7	□□□□□ -0.22
TPM3-223	ENST00000611659	STX10	O60499	249 aa		13.69	□□□□□ -0.22
TPM3-223	ENST00000611659	CHMP4BP1	P59074	171 aa		13.69	□□□□□ -0.22
TPM3-223	ENST00000611659	SPECC1L	Q69YQ0	1117 aa		13.69	□□□□□ -0.22
TPM3-223	ENST00000611659	LEKR1	Q6ZMV7	388 aa		13.69	□□□□□ -0.22
TPM3-223	ENST00000611659	TC2N	Q8N9U0	490 aa		13.69	□□□□□ -0.22
TPM3-223	ENST00000611659	GOLGA5	Q8TBA6	731 aa		13.69	□□□□□ -0.22
TPM3-223	ENST00000611659	ANKRD24	Q8TF21	1146 aa		13.69	□□□□□ -0.22
TPM3-223	ENST00000611659	CPLX3	Q8WVH0	158 aa		13.69	□□□□□ -0.22
TPM3-223	ENST00000611659	PHKB	Q93100	1093 aa		13.69	□□□□□ -0.22
TPM3-223	ENST00000611659	KIFC2	Q96AC6	838 aa		13.69	□□□□□ -0.22
TPM3-223	ENST00000611659	ZNF594	Q96JF6	807 aa	Predicted RBP	13.69	□□□□□ -0.22
TPM3-223	ENST00000611659	ORAI2	Q96SN7	254 aa		13.69	□□□□□ -0.22
TPM3-223	ENST00000611659	C19orf44	Q9H6X5	657 aa		13.69	□□□□□ -0.22
TPM3-223	ENST00000611659	PALLD	Q8WX93	1383 aa		13.69	□□□□□ -0.22
TPM3-223	ENST00000611659	WWC2	Q6AWC2	1192 aa		13.69	□□□□□ -0.22
TPM3-223	ENST00000611659	ZNF496	Q96IT1	587 aa	Predicted RBP	13.69	□□□□□ -0.22
TPM3-223	ENST00000611659	MRPL44	Q9H9J2	332 aa	Known RBP	13.69	□□□□□ -0.22
TPM3-223	ENST00000611659	KCNH3	Q9ULD8	1083 aa		13.69	□□□□□ -0.22
TPM3-223	ENST00000611659	FGA	P02671	866 aa		13.68	□□□□□ -0.22
TPM3-223	ENST00000611659	EXOC4	Q96A65	974 aa		13.68	□□□□□ -0.22
TPM3-223	ENST00000611659	MRC1	P22897	1456 aa		13.68	□□□□□ -0.22
TPM3-223	ENST00000611659	CCDC151	A5D8V7	595 aa		13.68	□□□□□ -0.22
TPM3-223	ENST00000611659	SOWAHD	A6NJG2	315 aa		13.68	□□□□□ -0.22
TPM3-223	ENST00000611659	BMP6	P22004	513 aa		13.68	□□□□□ -0.22
TPM3-223	ENST00000611659	RABL6	Q3YEC7	729 aa	Predicted RBP	13.68	□□□□□ -0.22
TPM3-223	ENST00000611659	LRRC24	Q50LG9	513 aa		13.68	□□□□□ -0.22
TPM3-223	ENST00000611659	JAKMIP3	Q5VZ66	844 aa		13.68	□□□□□ -0.22
TPM3-223	ENST00000611659	PHACTR2	O75167	634 aa		13.68	□□□□□ -0.22
TPM3-223	ENST00000611659	ZC3H6	P61129	1189 aa	Known RBP	13.68	□□□□□ -0.22
TPM3-223	ENST00000611659	KRT40	Q6A162	431 aa		13.68	□□□□□ -0.22
TPM3-223	ENST00000611659	KCNH5	Q8NCM2	988 aa		13.68	□□□□□ -0.22
TPM3-223	ENST00000611659	NCOA7	Q8NI08	942 aa		13.68	□□□□□ -0.22
TPM3-223	ENST00000611659	SUGCT	Q9HAC7	445 aa		13.68	□□□□□ -0.22
TPM3-223	ENST00000611659	HPSE	Q9Y251	543 aa		13.68	□□□□□ -0.22
TPM3-223	ENST00000611659	RRP15	Q9Y3B9	282 aa	Known RBP	13.68	□□□□□ -0.22
TPM3-223	ENST00000611659	LAMA4	Q16363	1823 aa		13.67	□□□□□ -0.22
TPM3-223	ENST00000611659	UBR1	Q8IWV7	1749 aa		13.67	□□□□□ -0.22
TPM3-223	ENST00000611659	RHOXF2B	P0C7M4	288 aa		13.67	□□□□□ -0.22
TPM3-223	ENST00000611659	RHOXF2	Q9BQY4	288 aa		13.67	□□□□□ -0.22
TPM3-223	ENST00000611659		A0A0U1RQJ8	604 aa		13.67	□□□□□ -0.22
TPM3-223	ENST00000611659		A0A1B0GUL7	405 aa		13.67	□□□□□ -0.22
TPM3-223	ENST00000611659	ZNF213	O14771	459 aa		13.67	□□□□□ -0.22
TPM3-223	ENST00000611659	N4BP1	O75113	896 aa	Known RBP	13.67	□□□□□ -0.22
TPM3-223	ENST00000611659	CCDC175	P0C221	793 aa		13.67	□□□□□ -0.22
TPM3-223	ENST00000611659	ACTN2	P35609	894 aa		13.67	□□□□□ -0.22
TPM3-223	ENST00000611659	ANTXR2	P58335	489 aa		13.67	□□□□□ -0.22
TPM3-223	ENST00000611659	FMR1	Q06787	632 aa	Known RBP eCLIP	13.67	□□□□□ -0.22
TPM3-223	ENST00000611659	MICU3	Q86XE3	530 aa		13.67	□□□□□ -0.22
TPM3-223	ENST00000611659	ATRIP	Q8WXE1	791 aa		13.67	□□□□□ -0.22
TPM3-223	ENST00000611659	ATG9A	Q7Z3C6	839 aa		13.66	□□□□□ -0.22
TPM3-223	ENST00000611659	CCDC102A	Q96A19	550 aa		13.66	□□□□□ -0.22
TPM3-223	ENST00000611659	SAMSN1	Q9NSI8	373 aa	Known RBP	13.66	□□□□□ -0.22
TPM3-223	ENST00000611659	DENND2A	Q9ULE3	1009 aa		13.66	□□□□□ -0.22
TPM3-223	ENST00000611659	TFRC	P02786	760 aa	Known RBP	13.66	□□□□□ -0.22
TPM3-223	ENST00000611659	METAP2	P50579	478 aa	Known RBP eCLIP	13.66	□□□□□ -0.22
TPM3-223	ENST00000611659	TBX2	Q13207	712 aa	Predicted RBP	13.66	□□□□□ -0.22
TPM3-223	ENST00000611659	TRIM29	Q14134	588 aa		13.66	□□□□□ -0.22
TPM3-223	ENST00000611659	BRD3	Q15059	726 aa		13.66	□□□□□ -0.22
TPM3-223	ENST00000611659	KIF4B	Q2VIQ3	1234 aa		13.66	□□□□□ -0.22
TPM3-223	ENST00000611659	RESP18	Q5W5W9	173 aa		13.66	□□□□□ -0.22
TPM3-223	ENST00000611659	SRL	Q86TD4	932 aa		13.66	□□□□□ -0.22
TPM3-223	ENST00000611659	MB21D2	Q8IYB1	491 aa	Predicted RBP	13.66	□□□□□ -0.22
TPM3-223	ENST00000611659	GRAMD1C	Q8IYS0	662 aa		13.66	□□□□□ -0.22
TPM3-223	ENST00000611659	TTC5	Q8N0Z6	440 aa		13.66	□□□□□ -0.22
TPM3-223	ENST00000611659	PPP6R2	O75170	966 aa		13.66	□□□□□ -0.22
TPM3-223	ENST00000611659	TRDN	Q13061	729 aa		13.66	□□□□□ -0.22
TPM3-223	ENST00000611659	SRGAP1	Q7Z6B7	1085 aa		13.66	□□□□□ -0.22
TPM3-223	ENST00000611659	KIF5C	O60282	957 aa		13.65	□□□□□ -0.22
TPM3-223	ENST00000611659	CUTA	O60888	179 aa		13.65	□□□□□ -0.22
TPM3-223	ENST00000611659	GC	P02774	474 aa		13.65	□□□□□ -0.22
TPM3-223	ENST00000611659	ATP2B1	P20020	1258 aa		13.65	□□□□□ -0.22
TPM3-223	ENST00000611659	PTPA	Q15257	358 aa		13.65	□□□□□ -0.22
TPM3-223	ENST00000611659	SKIDA1	Q1XH10	827 aa		13.65	□□□□□ -0.22
TPM3-223	ENST00000611659	ZNF569	Q5MCW4	686 aa		13.65	□□□□□ -0.22
TPM3-223	ENST00000611659	TTC39A	Q5SRH9	613 aa		13.65	□□□□□ -0.22
TPM3-223	ENST00000611659	HDX	Q7Z353	690 aa		13.65	□□□□□ -0.22
TPM3-223	ENST00000611659	RAI14	Q9P0K7	980 aa		13.65	□□□□□ -0.22
TPM3-223	ENST00000611659	MAN1B1	Q9UKM7	699 aa		13.65	□□□□□ -0.22
TPM3-223	ENST00000611659	FAN1	Q9Y2M0	1017 aa		13.65	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms