RNA–Protein interactions for RNA: ENST00000605424.5

MMP28-201, Transcript of matrix metallopeptidase 28, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MMP28, Length 1,928 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-201ENST00000605424 VPS37DQ86XT2 251 aa23.21■■□□□ 1.31
MMP28-201ENST00000605424 STAG1Q8WVM7 1258 aa23.21■■□□□ 1.31
MMP28-201ENST00000605424 PGBD1Q96JS3 809 aa23.21■■□□□ 1.31
MMP28-201ENST00000605424 C8orf76Q96K31 380 aa23.21■■□□□ 1.31
MMP28-201ENST00000605424 CYP7A1P22680 504 aa23.2■■□□□ 1.3
MMP28-201ENST00000605424 GYG1P46976 350 aa23.2■■□□□ 1.3
MMP28-201ENST00000605424 TPRNQ4KMQ1 711 aa23.2■■□□□ 1.3
MMP28-201ENST00000605424 MFSD6Q6ZSS7 791 aa23.2■■□□□ 1.3
MMP28-201ENST00000605424 FBXO33Q7Z6M2 555 aa23.2■■□□□ 1.3
MMP28-201ENST00000605424 LCORLQ8N3X6 602 aa23.2■■□□□ 1.3
MMP28-201ENST00000605424 FBXO18Q8NFZ0 1043 aa23.2■■□□□ 1.3
MMP28-201ENST00000605424 ARHGEF1Q92888 912 aaKnown RBP23.2■■□□□ 1.3
MMP28-201ENST00000605424 RNF41Q9H4P4 317 aaPredicted RBP23.2■■□□□ 1.3
MMP28-201ENST00000605424 NEDD4P46934 1319 aa23.2■■□□□ 1.3
MMP28-201ENST00000605424 TRIM37O94972 964 aa23.2■■□□□ 1.3
MMP28-201ENST00000605424 C4AP0C0L4 1744 aa23.2■■□□□ 1.3
MMP28-201ENST00000605424 C4BP0C0L5 1744 aa23.2■■□□□ 1.3
MMP28-201ENST00000605424 TDO2P48775 406 aa23.2■■□□□ 1.3
MMP28-201ENST00000605424 METAP2P50579 478 aaKnown RBP eCLIP23.2■■□□□ 1.3
MMP28-201ENST00000605424 APOA5Q6Q788 366 aa23.2■■□□□ 1.3
MMP28-201ENST00000605424 FAM84BQ96KN1 310 aaPredicted RBP23.2■■□□□ 1.3
MMP28-201ENST00000605424 DACT1Q9NYF0 836 aa23.2■■□□□ 1.3
MMP28-201ENST00000605424 CHD4Q14839 1912 aa23.19■■□□□ 1.3
MMP28-201ENST00000605424 RBM43Q6ZSC3 357 aaKnown RBP23.19■■□□□ 1.3
MMP28-201ENST00000605424 BRAPQ7Z569 592 aa23.19■■□□□ 1.3
MMP28-201ENST00000605424 ZSCAN30Q86W11 494 aa23.19■■□□□ 1.3
MMP28-201ENST00000605424 BICD2Q8TD16 824 aa23.18■■□□□ 1.3
MMP28-201ENST00000605424 TNMDQ9H2S6 317 aa23.18■■□□□ 1.3
MMP28-201ENST00000605424 CLSTN2Q9H4D0 955 aa23.18■■□□□ 1.3
MMP28-201ENST00000605424 LY9Q9HBG7 655 aa23.18■■□□□ 1.3
MMP28-201ENST00000605424 RAI14Q9P0K7 980 aa23.18■■□□□ 1.3
MMP28-201ENST00000605424 MAGEB6P1A0A0J9YX57 407 aa23.18■■□□□ 1.3
MMP28-201ENST00000605424 IGSF3O75054 1194 aa23.18■■□□□ 1.3
MMP28-201ENST00000605424 TMEM67Q5HYA8 995 aa23.18■■□□□ 1.3
MMP28-201ENST00000605424 TRAPPC3LQ5T215 181 aa23.18■■□□□ 1.3
MMP28-201ENST00000605424 ZSWIM5Q9P217 1185 aa23.18■■□□□ 1.3
MMP28-201ENST00000605424 ABCF2Q9UG63 623 aa23.18■■□□□ 1.3
MMP28-201ENST00000605424 ANAPC4Q9UJX5 808 aa23.18■■□□□ 1.3
MMP28-201ENST00000605424 ZBTB43O43298 467 aa23.17■■□□□ 1.3
MMP28-201ENST00000605424 RFC4P35249 363 aa23.17■■□□□ 1.3
MMP28-201ENST00000605424 SART3Q15020 963 aaKnown RBP23.17■■□□□ 1.3
MMP28-201ENST00000605424 TMTC2Q8N394 836 aa23.17■■□□□ 1.3
MMP28-201ENST00000605424 NID2Q14112 1375 aa23.17■■□□□ 1.3
MMP28-201ENST00000605424 TAF1P21675 1872 aa23.16■■□□□ 1.3
MMP28-201ENST00000605424 ADRA2BP18089 450 aa23.16■■□□□ 1.3
MMP28-201ENST00000605424 CTDSPL2Q05D32 466 aa23.16■■□□□ 1.3
MMP28-201ENST00000605424 USP28Q96RU2 1077 aa23.16■■□□□ 1.3
MMP28-201ENST00000605424 RTEL1Q9NZ71 1219 aa23.16■■□□□ 1.3
MMP28-201ENST00000605424 IFIT3O14879 490 aaKnown RBP23.16■■□□□ 1.3
MMP28-201ENST00000605424 PRKAB2O43741 272 aa23.16■■□□□ 1.3
MMP28-201ENST00000605424 RCAN1P53805 252 aa23.16■■□□□ 1.3
MMP28-201ENST00000605424 NFXL1Q6ZNB6 911 aa23.16■■□□□ 1.3
MMP28-201ENST00000605424 CCDC39Q9UFE4 941 aa23.16■■□□□ 1.3
MMP28-201ENST00000605424 COL1A1P02452 1464 aaPredicted RBP23.15■■□□□ 1.3
MMP28-201ENST00000605424 KDM4AO75164 1064 aa23.15■■□□□ 1.3
MMP28-201ENST00000605424 FOSBP53539 338 aa23.15■■□□□ 1.3
MMP28-201ENST00000605424 GUCY1B3Q02153 619 aa23.15■■□□□ 1.3
MMP28-201ENST00000605424 SYNE3Q6ZMZ3 975 aa23.15■■□□□ 1.3
MMP28-201ENST00000605424 SMIM5Q71RC9 77 aa23.15■■□□□ 1.3
MMP28-201ENST00000605424 MIGA1Q8NAN2 632 aa23.15■■□□□ 1.3
MMP28-201ENST00000605424 BCL11BQ9C0K0 894 aaPredicted RBP23.15■■□□□ 1.3
MMP28-201ENST00000605424 IQSEC3Q9UPP2 1182 aaPredicted RBP23.15■■□□□ 1.3
MMP28-201ENST00000605424 TM4SF1P30408 202 aa23.14■■□□□ 1.3
MMP28-201ENST00000605424 RIOK1Q9BRS2 568 aaKnown RBP23.14■■□□□ 1.3
MMP28-201ENST00000605424 SLC12A7Q9Y666 1083 aa23.14■■□□□ 1.3
MMP28-201ENST00000605424 CACNA1SQ13698 1873 aa23.14■■□□□ 1.3
MMP28-201ENST00000605424 CCDC69A6NI79 296 aa23.14■■□□□ 1.29
MMP28-201ENST00000605424 CTAGE5O15320 804 aa23.14■■□□□ 1.29
MMP28-201ENST00000605424 HIBADHP31937 336 aaKnown RBP23.14■■□□□ 1.29
MMP28-201ENST00000605424 NKX2-3Q8TAU0 364 aa23.14■■□□□ 1.29
MMP28-201ENST00000605424 BRIP1Q9BX63 1249 aa23.14■■□□□ 1.29
MMP28-201ENST00000605424 NOL7Q9UMY1 257 aaKnown RBP23.14■■□□□ 1.29
MMP28-201ENST00000605424 STK36Q9NRP7 1315 aa23.13■■□□□ 1.29
MMP28-201ENST00000605424 NR1I2O75469 434 aa23.13■■□□□ 1.29
MMP28-201ENST00000605424 PCP11498 1178 aaKnown RBP23.13■■□□□ 1.29
MMP28-201ENST00000605424 PPARAQ07869 468 aa23.13■■□□□ 1.29
MMP28-201ENST00000605424 ERICH2A1L162 156 aa23.12■■□□□ 1.29
MMP28-201ENST00000605424 GOLGA8AA7E2F4 631 aa23.12■■□□□ 1.29
MMP28-201ENST00000605424 YEATS4O95619 227 aa23.12■■□□□ 1.29
MMP28-201ENST00000605424 ADGRA1Q86SQ6 560 aa23.12■■□□□ 1.29
MMP28-201ENST00000605424 POLR3EQ9NVU0 708 aa23.12■■□□□ 1.29
MMP28-201ENST00000605424 CAVIN2O95810 425 aa23.12■■□□□ 1.29
MMP28-201ENST00000605424 CEBPZQ03701 1054 aaKnown RBP23.12■■□□□ 1.29
MMP28-201ENST00000605424 NTRK3Q16288 839 aa23.12■■□□□ 1.29
MMP28-201ENST00000605424 KCNG4Q8TDN1 519 aa23.12■■□□□ 1.29
MMP28-201ENST00000605424 TACC3Q9Y6A5 838 aa23.12■■□□□ 1.29
MMP28-201ENST00000605424 PPFIA3O75145 1194 aa23.11■■□□□ 1.29
MMP28-201ENST00000605424 MSNP26038 577 aaKnown RBP23.11■■□□□ 1.29
MMP28-201ENST00000605424 CDC27P30260 824 aa23.11■■□□□ 1.29
MMP28-201ENST00000605424 IARSP41252 1262 aaKnown RBP23.11■■□□□ 1.29
MMP28-201ENST00000605424 TYRO3Q06418 890 aa23.11■■□□□ 1.29
MMP28-201ENST00000605424 CAMK4Q16566 473 aa23.11■■□□□ 1.29
MMP28-201ENST00000605424 MICU3Q86XE3 530 aa23.11■■□□□ 1.29
MMP28-201ENST00000605424 CCAR1Q8IX12 1150 aaKnown RBP23.11■■□□□ 1.29
MMP28-201ENST00000605424 FAM200AQ8TCP9 573 aa23.11■■□□□ 1.29
MMP28-201ENST00000605424 ALG1Q9BT22 464 aa23.11■■□□□ 1.29
MMP28-201ENST00000605424 WTIPA6NIX2 430 aaPredicted RBP23.1■■□□□ 1.29
MMP28-201ENST00000605424 KIF23Q02241 960 aaPredicted RBP23.1■■□□□ 1.29
MMP28-201ENST00000605424 WTAPQ15007 396 aa23.1■■□□□ 1.29
MMP28-201ENST00000605424 MYSM1Q5VVJ2 828 aa23.1■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms