RNA–Protein interactions for RNA: ENST00000595081.5

PNKP-205, Transcript of polynucleotide kinase 3'-phosphatase, human

TSL 2

Gene PNKP, Length 513 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PNKP-205	ENST00000595081	ZNF408	Q9H9D4	720 aa		27.81	■■■□□ 2.04
PNKP-205	ENST00000595081	STAP2	Q9UGK3	403 aa		27.81	■■■□□ 2.04
PNKP-205	ENST00000595081	DOCK2	Q92608	1830 aa		27.81	■■■□□ 2.04
PNKP-205	ENST00000595081	TCP10L2	B9ZVM9	353 aa		27.8	■■■□□ 2.04
PNKP-205	ENST00000595081	GLRX3	O76003	335 aa	Known RBP	27.8	■■■□□ 2.04
PNKP-205	ENST00000595081	MAP4K4	O95819	1239 aa	Predicted RBP	27.8	■■■□□ 2.04
PNKP-205	ENST00000595081	HSPA6	P17066	643 aa		27.8	■■■□□ 2.04
PNKP-205	ENST00000595081	APLP1	P51693	650 aa		27.8	■■■□□ 2.04
PNKP-205	ENST00000595081	CDCA5	Q96FF9	252 aa		27.8	■■■□□ 2.04
PNKP-205	ENST00000595081	DEFB129	Q9H1M3	183 aa		27.8	■■■□□ 2.04
PNKP-205	ENST00000595081	USP40	Q9NVE5	1235 aa		27.8	■■■□□ 2.04
PNKP-205	ENST00000595081	GPR75-ASB3	A0A0A6YYF3	556 aa		27.79	■■■□□ 2.04
PNKP-205	ENST00000595081	CYP7A1	P22680	504 aa		27.79	■■■□□ 2.04
PNKP-205	ENST00000595081	TMOD2	Q9NZR1	351 aa		27.79	■■■□□ 2.04
PNKP-205	ENST00000595081	CELF2	O95319	508 aa	Known RBP	27.78	■■■□□ 2.04
PNKP-205	ENST00000595081	RASA3	Q14644	834 aa		27.78	■■■□□ 2.04
PNKP-205	ENST00000595081	CST9	Q5W186	159 aa		27.78	■■■□□ 2.04
PNKP-205	ENST00000595081	IGSF3	O75054	1194 aa		27.77	■■■□□ 2.04
PNKP-205	ENST00000595081	PDE6A	P16499	860 aa		27.77	■■■□□ 2.04
PNKP-205	ENST00000595081	HTRA3	P83110	453 aa		27.77	■■■□□ 2.04
PNKP-205	ENST00000595081	SLC9C2	Q5TAH2	1124 aa		27.77	■■■□□ 2.04
PNKP-205	ENST00000595081	PLEKHM2	Q8IWE5	1019 aa		27.77	■■■□□ 2.04
PNKP-205	ENST00000595081	CNTNAP1	P78357	1384 aa		27.76	■■■□□ 2.03
PNKP-205	ENST00000595081	PDE4A	P27815	886 aa		27.76	■■■□□ 2.03
PNKP-205	ENST00000595081	NFIA	Q12857	509 aa		27.76	■■■□□ 2.03
PNKP-205	ENST00000595081	TNFAIP1	Q13829	316 aa		27.76	■■■□□ 2.03
PNKP-205	ENST00000595081	CCDC136	Q96JN2	1154 aa		27.76	■■■□□ 2.03
PNKP-205	ENST00000595081	AATF	Q9NY61	560 aa	Known RBP eCLIP	27.76	■■■□□ 2.03
PNKP-205	ENST00000595081	RHBDL3	P58872	404 aa		27.75	■■■□□ 2.03
PNKP-205	ENST00000595081	SLFNL1	Q499Z3	407 aa		27.75	■■■□□ 2.03
PNKP-205	ENST00000595081	MIGA1	Q8NAN2	632 aa		27.75	■■■□□ 2.03
PNKP-205	ENST00000595081	TMEM88B	A6NKF7	163 aa		27.74	■■■□□ 2.03
PNKP-205	ENST00000595081	CHGB	P05060	677 aa		27.74	■■■□□ 2.03
PNKP-205	ENST00000595081	CENPQ	Q7L2Z9	268 aa	Predicted RBP	27.74	■■■□□ 2.03
PNKP-205	ENST00000595081	CDAN1	Q8IWY9	1227 aa		27.74	■■■□□ 2.03
PNKP-205	ENST00000595081	NOL10	Q9BSC4	688 aa	Known RBP	27.74	■■■□□ 2.03
PNKP-205	ENST00000595081	TMEM39B	Q9GZU3	492 aa		27.74	■■■□□ 2.03
PNKP-205	ENST00000595081	PPP2R3B	Q9Y5P8	575 aa		27.74	■■■□□ 2.03
PNKP-205	ENST00000595081	TRPM7	Q96QT4	1865 aa		27.74	■■■□□ 2.03
PNKP-205	ENST00000595081	ZNF532	Q9HCE3	1301 aa		27.73	■■■□□ 2.03
PNKP-205	ENST00000595081	TNNI2	P48788	182 aa		27.73	■■■□□ 2.03
PNKP-205	ENST00000595081	DYNLL1	P63167	89 aa	Known RBP	27.73	■■■□□ 2.03
PNKP-205	ENST00000595081	TCP10	Q12799	353 aa		27.73	■■■□□ 2.03
PNKP-205	ENST00000595081	FKBP1C	Q5VVH2	108 aa		27.73	■■■□□ 2.03
PNKP-205	ENST00000595081	KBTBD3	Q8NAB2	608 aa		27.73	■■■□□ 2.03
PNKP-205	ENST00000595081	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	27.73	■■■□□ 2.03
PNKP-205	ENST00000595081	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	27.73	■■■□□ 2.03	1e-10	■□□□□ 9.6
PNKP-205	ENST00000595081	FAM198A	Q9UFP1	575 aa		27.73	■■■□□ 2.03
PNKP-205	ENST00000595081	TCRBV5S4A2T	A0A5A2	114 aa		27.72	■■■□□ 2.03
PNKP-205	ENST00000595081	WDHD1	O75717	1129 aa	Predicted RBP	27.72	■■■□□ 2.03
PNKP-205	ENST00000595081	BAG3	O95817	575 aa		27.72	■■■□□ 2.03
PNKP-205	ENST00000595081	ADD2	P35612	726 aa		27.72	■■■□□ 2.03
PNKP-205	ENST00000595081	CREBZF	Q9NS37	354 aa		27.72	■■■□□ 2.03
PNKP-205	ENST00000595081	RFX7	Q2KHR2	1363 aa		27.72	■■■□□ 2.03
PNKP-205	ENST00000595081	PPP4C	P60510	307 aa		27.71	■■■□□ 2.03
PNKP-205	ENST00000595081	NBPF12	Q5TAG4	269 aa	Predicted RBP	27.71	■■■□□ 2.03
PNKP-205	ENST00000595081	TMED8	Q6PL24	325 aa	Predicted RBP	27.71	■■■□□ 2.03
PNKP-205	ENST00000595081	FAM83A	Q86UY5	434 aa		27.71	■■■□□ 2.03
PNKP-205	ENST00000595081	RGS3	P49796	1198 aa		27.7	■■■□□ 2.02
PNKP-205	ENST00000595081	PICALM	Q13492	652 aa		27.7	■■■□□ 2.02
PNKP-205	ENST00000595081	ZFPM1	Q8IX07	1006 aa		27.7	■■■□□ 2.02
PNKP-205	ENST00000595081	TEX11	Q8IYF3	940 aa		27.7	■■■□□ 2.02
PNKP-205	ENST00000595081	TEPSIN	Q96N21	525 aa		27.7	■■■□□ 2.02
PNKP-205	ENST00000595081	IDI2	Q9BXS1	227 aa		27.7	■■■□□ 2.02
PNKP-205	ENST00000595081	OSBPL3	Q9H4L5	887 aa		27.7	■■■□□ 2.02
PNKP-205	ENST00000595081	DDX4	Q9NQI0	724 aa	Known RBP	27.7	■■■□□ 2.02
PNKP-205	ENST00000595081	SSC5D	A1L4H1	1573 aa		27.69	■■■□□ 2.02
PNKP-205	ENST00000595081	GBA2	Q9HCG7	927 aa	Predicted RBP	27.69	■■■□□ 2.02
PNKP-205	ENST00000595081	PLCG2	P16885	1265 aa		27.68	■■■□□ 2.02
PNKP-205	ENST00000595081	ERICH6B	Q5W0A0	696 aa		27.68	■■■□□ 2.02
PNKP-205	ENST00000595081	FAM151A	Q8WW52	585 aa		27.68	■■■□□ 2.02
PNKP-205	ENST00000595081	FSD1	Q9BTV5	496 aa		27.68	■■■□□ 2.02
PNKP-205	ENST00000595081	ABT1	Q9ULW3	272 aa	Known RBP	27.68	■■■□□ 2.02
PNKP-205	ENST00000595081	NF2	P35240	595 aa		27.67	■■■□□ 2.02
PNKP-205	ENST00000595081	PRKG1	Q13976	671 aa		27.67	■■■□□ 2.02
PNKP-205	ENST00000595081	UBE3C	Q15386	1083 aa		27.67	■■■□□ 2.02
PNKP-205	ENST00000595081	ZSCAN25	Q6NSZ9	544 aa		27.67	■■■□□ 2.02
PNKP-205	ENST00000595081	MOB2	Q70IA6	237 aa		27.67	■■■□□ 2.02
PNKP-205	ENST00000595081	RIOK1	Q9BRS2	568 aa	Known RBP	27.67	■■■□□ 2.02
PNKP-205	ENST00000595081	FZD1	Q9UP38	647 aa		27.67	■■■□□ 2.02
PNKP-205	ENST00000595081	MAGEB6P1	A0A0J9YX57	407 aa		27.66	■■■□□ 2.02
PNKP-205	ENST00000595081	ENTPD3	O75355	529 aa		27.66	■■■□□ 2.02
PNKP-205	ENST00000595081	SUPT20HL1	Q3ZLR7	823 aa		27.66	■■■□□ 2.02
PNKP-205	ENST00000595081	C2orf69	Q8N8R5	385 aa		27.66	■■■□□ 2.02
PNKP-205	ENST00000595081	MYH7	P12883	1935 aa		27.66	■■■□□ 2.02
PNKP-205	ENST00000595081	TTLL12	Q14166	644 aa	Predicted RBP	27.65	■■■□□ 2.02
PNKP-205	ENST00000595081	SKAP1	Q86WV1	359 aa		27.65	■■■□□ 2.02
PNKP-205	ENST00000595081	EVI5L	Q96CN4	794 aa		27.65	■■■□□ 2.02
PNKP-205	ENST00000595081	PPP4R2	Q9NY27	417 aa		27.65	■■■□□ 2.02
PNKP-205	ENST00000595081	TLL2	Q9Y6L7	1015 aa		27.65	■■■□□ 2.02
PNKP-205	ENST00000595081	CEP350	Q5VT06	3117 aa		27.65	■■■□□ 2.02
PNKP-205	ENST00000595081	RPAP1	Q9BWH6	1393 aa	Predicted RBP	27.64	■■■□□ 2.02
PNKP-205	ENST00000595081	TRIM6-TRIM34	B2RNG4	842 aa		27.64	■■■□□ 2.02
PNKP-205	ENST00000595081	RNF113A	O15541	343 aa	Known RBP	27.64	■■■□□ 2.02
PNKP-205	ENST00000595081	SAPCD2	Q86UD0	394 aa		27.64	■■■□□ 2.02
PNKP-205	ENST00000595081	TGFBRAP1	Q8WUH2	860 aa		27.64	■■■□□ 2.02
PNKP-205	ENST00000595081	MBD4	O95243	580 aa		27.63	■■■□□ 2.01
PNKP-205	ENST00000595081	SH3BP5L	Q7L8J4	393 aa		27.63	■■■□□ 2.01
PNKP-205	ENST00000595081	MAPKAPK5	Q8IW41	473 aa		27.63	■■■□□ 2.01
PNKP-205	ENST00000595081	LCORL	Q8N3X6	602 aa		27.63	■■■□□ 2.01

Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms