RNA–Protein interactions for RNA: ENST00000589823.6

VMP1-210, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 580 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-210ENST00000589823 ADGRA1Q86SQ6 560 aa16.41■□□□□ 0.22
VMP1-210ENST00000589823 MIGA1Q8NAN2 632 aa16.41■□□□□ 0.22
VMP1-210ENST00000589823 AIDAQ96BJ3 306 aa16.41■□□□□ 0.22
VMP1-210ENST00000589823 AATFQ9NY61 560 aaKnown RBP eCLIP16.41■□□□□ 0.22
VMP1-210ENST00000589823 TMOD2Q9NZR1 351 aa16.41■□□□□ 0.22
VMP1-210ENST00000589823 PCDHAC2Q9Y5I4 1007 aa16.41■□□□□ 0.22
VMP1-210ENST00000589823 AK9Q5TCS8 1911 aa16.41■□□□□ 0.22
VMP1-210ENST00000589823 CHGBP05060 677 aa16.4■□□□□ 0.22
VMP1-210ENST00000589823 PPP4CP60510 307 aa16.4■□□□□ 0.22
VMP1-210ENST00000589823 NBPF9Q3BBW0 867 aa16.4■□□□□ 0.22
VMP1-210ENST00000589823 ZMYM1Q5SVZ6 1142 aa16.4■□□□□ 0.22
VMP1-210ENST00000589823 CASC1Q6TDU7 716 aa16.4■□□□□ 0.22
VMP1-210ENST00000589823 ZBED3Q96IU2 234 aaPredicted RBP16.4■□□□□ 0.22
VMP1-210ENST00000589823 TDRD3Q9H7E2 651 aaKnown RBP16.4■□□□□ 0.22
VMP1-210ENST00000589823 USP40Q9NVE5 1235 aa16.4■□□□□ 0.22
VMP1-210ENST00000589823 MYH7P12883 1935 aa16.4■□□□□ 0.22
VMP1-210ENST00000589823 ADAMTSL1Q8N6G6 1762 aa16.39■□□□□ 0.21
VMP1-210ENST00000589823 HIRAP54198 1017 aaPredicted RBP16.39■□□□□ 0.21
VMP1-210ENST00000589823 DYNLL1P63167 89 aaKnown RBP16.39■□□□□ 0.21
VMP1-210ENST00000589823 NMIQ13287 307 aaPredicted RBP16.39■□□□□ 0.21
VMP1-210ENST00000589823 CDC42EP5Q6NZY7 148 aa16.39■□□□□ 0.21
VMP1-210ENST00000589823 RUFY2Q8WXA3 655 aa16.39■□□□□ 0.21
VMP1-210ENST00000589823 OSBP2Q969R2 916 aa16.39■□□□□ 0.21
VMP1-210ENST00000589823 PUS7LQ9H0K6 701 aaKnown RBP16.39■□□□□ 0.21
VMP1-210ENST00000589823 HELLSQ9NRZ9 838 aa16.39■□□□□ 0.21
VMP1-210ENST00000589823 CLEC11AQ9Y240 323 aa16.39■□□□□ 0.21
VMP1-210ENST00000589823 CLRN2A0PK11 232 aa16.38■□□□□ 0.21
VMP1-210ENST00000589823 CDC45O75419 566 aa16.38■□□□□ 0.21
VMP1-210ENST00000589823 MBD4O95243 580 aa16.38■□□□□ 0.21
VMP1-210ENST00000589823 CHMLP26374 656 aa16.38■□□□□ 0.21
VMP1-210ENST00000589823 SPDYE2Q495Y8 402 aa16.38■□□□□ 0.21
VMP1-210ENST00000589823 MCMDC2Q4G0Z9 681 aa16.38■□□□□ 0.21
VMP1-210ENST00000589823 CWC27Q6UX04 472 aaKnown RBP16.38■□□□□ 0.21
VMP1-210ENST00000589823 TEX11Q8IYF3 940 aa16.38■□□□□ 0.21
VMP1-210ENST00000589823 ZC3H15Q8WU90 426 aaKnown RBP16.38■□□□□ 0.21
VMP1-210ENST00000589823 FAM227BQ96M60 508 aa16.38■□□□□ 0.21
VMP1-210ENST00000589823 VEZTQ9HBM0 779 aa16.38■□□□□ 0.21
VMP1-210ENST00000589823 ZNF70Q9UC06 446 aaPredicted RBP16.38■□□□□ 0.21
VMP1-210ENST00000589823 A0A0D9SFI3 127 aa16.37■□□□□ 0.21
VMP1-210ENST00000589823 MFAP1P55081 439 aaKnown RBP16.37■□□□□ 0.21
VMP1-210ENST00000589823 ANGEL2Q5VTE6 544 aaKnown RBP16.37■□□□□ 0.21
VMP1-210ENST00000589823 SH3RF3Q8TEJ3 882 aaPredicted RBP16.37■□□□□ 0.21
VMP1-210ENST00000589823 DCPSQ96C86 337 aaKnown RBP16.37■□□□□ 0.21
VMP1-210ENST00000589823 SEC62Q99442 399 aaKnown RBP16.37■□□□□ 0.21
VMP1-210ENST00000589823 RIOK1Q9BRS2 568 aaKnown RBP16.37■□□□□ 0.21
VMP1-210ENST00000589823 CRNKL1Q9BZJ0 848 aaKnown RBP16.37■□□□□ 0.21
VMP1-210ENST00000589823 ARMT1Q9H993 441 aa16.37■□□□□ 0.21
VMP1-210ENST00000589823 GGA3Q9NZ52 723 aa16.37■□□□□ 0.21
VMP1-210ENST00000589823 M0R2C6 588 aa16.36■□□□□ 0.21
VMP1-210ENST00000589823 GPAA1O43292 621 aa16.36■□□□□ 0.21
VMP1-210ENST00000589823 RHBDL3P58872 404 aa16.36■□□□□ 0.21
VMP1-210ENST00000589823 LDHDQ86WU2 507 aa16.36■□□□□ 0.21
VMP1-210ENST00000589823 APOBEC3FQ8IUX4 373 aaKnown RBP16.36■□□□□ 0.21
VMP1-210ENST00000589823 LCORLQ8N3X6 602 aa16.36■□□□□ 0.21
VMP1-210ENST00000589823 ZNF784Q8NCA9 323 aaPredicted RBP16.36■□□□□ 0.21
VMP1-210ENST00000589823 ASTN2O75129 1339 aaPredicted RBP16.36■□□□□ 0.21
VMP1-210ENST00000589823 PITPNM2Q9BZ72 1349 aa16.36■□□□□ 0.21
VMP1-210ENST00000589823 GNAT2P19087 354 aa16.35■□□□□ 0.21
VMP1-210ENST00000589823 USP5P45974 858 aa16.35■□□□□ 0.21
VMP1-210ENST00000589823 TNNI2P48788 182 aa16.35■□□□□ 0.21
VMP1-210ENST00000589823 CACNB3P54284 484 aa16.35■□□□□ 0.21
VMP1-210ENST00000589823 TNFAIP1Q13829 316 aa16.35■□□□□ 0.21
VMP1-210ENST00000589823 FKBP1CQ5VVH2 108 aa16.35■□□□□ 0.21
VMP1-210ENST00000589823 STRBPQ96SI9 672 aaKnown RBP16.35■□□□□ 0.21
VMP1-210ENST00000589823 RAD50Q92878 1312 aa16.35■□□□□ 0.21
VMP1-210ENST00000589823 TCP10L2B9ZVM9 353 aa16.34■□□□□ 0.21
VMP1-210ENST00000589823 POTEIP0CG38 1075 aa16.34■□□□□ 0.21
VMP1-210ENST00000589823 POTEJP0CG39 1038 aa16.34■□□□□ 0.21
VMP1-210ENST00000589823 PICALMQ13492 652 aa16.34■□□□□ 0.21
VMP1-210ENST00000589823 CCDC129Q6ZRS4 1044 aa16.34■□□□□ 0.21
VMP1-210ENST00000589823 SULF1Q8IWU6 871 aa16.34■□□□□ 0.21
VMP1-210ENST00000589823 TGFBRAP1Q8WUH2 860 aa16.34■□□□□ 0.21
VMP1-210ENST00000589823 DDRGK1Q96HY6 314 aa16.34■□□□□ 0.21
VMP1-210ENST00000589823 IDI2Q9BXS1 227 aa16.34■□□□□ 0.21
VMP1-210ENST00000589823 PGAP2Q9UHJ9 254 aa16.34■□□□□ 0.21
VMP1-210ENST00000589823 SLC4A4Q9Y6R1 1079 aa16.34■□□□□ 0.21
VMP1-210ENST00000589823 ECM29Q5VYK3 1845 aa16.33■□□□□ 0.21
VMP1-210ENST00000589823 KIF3CO14782 793 aa16.33■□□□□ 0.2
VMP1-210ENST00000589823 WDHD1O75717 1129 aaPredicted RBP16.33■□□□□ 0.2
VMP1-210ENST00000589823 CCDC171Q6TFL3 1326 aa16.33■□□□□ 0.2
VMP1-210ENST00000589823 ENTPD3O75355 529 aa16.32■□□□□ 0.2
VMP1-210ENST00000589823 APPP05067 770 aa16.32■□□□□ 0.2
VMP1-210ENST00000589823 NFIAQ12857 509 aa16.32■□□□□ 0.2
VMP1-210ENST00000589823 CDC37L1Q7L3B6 337 aa16.32■□□□□ 0.2
VMP1-210ENST00000589823 ZNF589Q86UQ0 364 aaPredicted RBP16.32■□□□□ 0.2
VMP1-210ENST00000589823 FAM83AQ86UY5 434 aa16.32■□□□□ 0.2
VMP1-210ENST00000589823 MAPKAPK5Q8IW41 473 aa16.32■□□□□ 0.2
VMP1-210ENST00000589823 SDR42E1Q8WUS8 393 aa16.32■□□□□ 0.2
VMP1-210ENST00000589823 FAM151AQ8WW52 585 aa16.32■□□□□ 0.2
VMP1-210ENST00000589823 ATP8A2Q9NTI2 1148 aa16.32■□□□□ 0.2
VMP1-210ENST00000589823 PPP2R3BQ9Y5P8 575 aa16.32■□□□□ 0.2
VMP1-210ENST00000589823 RPAP1Q9BWH6 1393 aaPredicted RBP16.31■□□□□ 0.2
VMP1-210ENST00000589823 FLT1P17948 1338 aa16.31■□□□□ 0.2
VMP1-210ENST00000589823 PATL2C9JE40 543 aaKnown RBP16.31■□□□□ 0.2
VMP1-210ENST00000589823 SGSM2O43147 1006 aa16.31■□□□□ 0.2
VMP1-210ENST00000589823 PRKAB2O43741 272 aa16.31■□□□□ 0.2
VMP1-210ENST00000589823 NPM3O75607 178 aaKnown RBP16.31■□□□□ 0.2
VMP1-210ENST00000589823 TCP10Q12799 353 aa16.31■□□□□ 0.2
VMP1-210ENST00000589823 RASA3Q14644 834 aa16.31■□□□□ 0.2
VMP1-210ENST00000589823 CHADLQ6NUI6 762 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms