RNA–Protein interactions for RNA: ENST00000587988.5

SMARCA4-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 552 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-213ENST00000587988 MIGA1Q8NAN2 632 aa12.95□□□□□ -0.34
SMARCA4-213ENST00000587988 AATFQ9NY61 560 aaKnown RBP eCLIP12.95□□□□□ -0.34
SMARCA4-213ENST00000587988 SCAF8Q9UPN6 1271 aaKnown RBP12.95□□□□□ -0.34
SMARCA4-213ENST00000587988 RHBDL3P58872 404 aa12.94□□□□□ -0.34
SMARCA4-213ENST00000587988 UBE3CQ15386 1083 aa12.94□□□□□ -0.34
SMARCA4-213ENST00000587988 ZSCAN25Q6NSZ9 544 aa12.94□□□□□ -0.34
SMARCA4-213ENST00000587988 CDC42EP5Q6NZY7 148 aa12.94□□□□□ -0.34
SMARCA4-213ENST00000587988 PUS7LQ9H0K6 701 aaKnown RBP12.94□□□□□ -0.34
SMARCA4-213ENST00000587988 ZNF70Q9UC06 446 aaPredicted RBP12.94□□□□□ -0.34
SMARCA4-213ENST00000587988 POLR2AP24928 1970 aaKnown RBP12.94□□□□□ -0.34
SMARCA4-213ENST00000587988 ECM29Q5VYK3 1845 aa12.93□□□□□ -0.34
SMARCA4-213ENST00000587988 CACNB3P54284 484 aa12.93□□□□□ -0.34
SMARCA4-213ENST00000587988 SPDYE2Q495Y8 402 aa12.93□□□□□ -0.34
SMARCA4-213ENST00000587988 ANGEL2Q5VTE6 544 aaKnown RBP12.93□□□□□ -0.34
SMARCA4-213ENST00000587988 OSBP2Q969R2 916 aa12.93□□□□□ -0.34
SMARCA4-213ENST00000587988 SEC62Q99442 399 aaKnown RBP12.93□□□□□ -0.34
SMARCA4-213ENST00000587988 RIOK1Q9BRS2 568 aaKnown RBP12.93□□□□□ -0.34
SMARCA4-213ENST00000587988 USP40Q9NVE5 1235 aa12.93□□□□□ -0.34
SMARCA4-213ENST00000587988 GGA3Q9NZ52 723 aa12.93□□□□□ -0.34
SMARCA4-213ENST00000587988 PGAP2Q9UHJ9 254 aa12.93□□□□□ -0.34
SMARCA4-213ENST00000587988 CLEC11AQ9Y240 323 aa12.93□□□□□ -0.34
SMARCA4-213ENST00000587988 M0R2C6 588 aa12.92□□□□□ -0.34
SMARCA4-213ENST00000587988 ZFYP08048 801 aaPredicted RBP12.92□□□□□ -0.34
SMARCA4-213ENST00000587988 PPP4CP60510 307 aa12.92□□□□□ -0.34
SMARCA4-213ENST00000587988 BMP2KLQ5H9B9 411 aa12.92□□□□□ -0.34
SMARCA4-213ENST00000587988 ZMYM1Q5SVZ6 1142 aa12.92□□□□□ -0.34
SMARCA4-213ENST00000587988 LDHDQ86WU2 507 aa12.92□□□□□ -0.34
SMARCA4-213ENST00000587988 SH3RF3Q8TEJ3 882 aaPredicted RBP12.92□□□□□ -0.34
SMARCA4-213ENST00000587988 ZC3H15Q8WU90 426 aaKnown RBP12.92□□□□□ -0.34
SMARCA4-213ENST00000587988 APPBP2Q92624 585 aa12.92□□□□□ -0.34
SMARCA4-213ENST00000587988 FAM227BQ96M60 508 aa12.92□□□□□ -0.34
SMARCA4-213ENST00000587988 A0A0D9SFI3 127 aa12.91□□□□□ -0.34
SMARCA4-213ENST00000587988 MAGEB6P1A0A0J9YX57 407 aa12.91□□□□□ -0.34
SMARCA4-213ENST00000587988 TCP10L2B9ZVM9 353 aa12.91□□□□□ -0.34
SMARCA4-213ENST00000587988 MYO1BO43795 1136 aa12.91□□□□□ -0.34
SMARCA4-213ENST00000587988 MBD4O95243 580 aa12.91□□□□□ -0.34
SMARCA4-213ENST00000587988 BAG3O95817 575 aa12.91□□□□□ -0.34
SMARCA4-213ENST00000587988 NFIAQ12857 509 aa12.91□□□□□ -0.34
SMARCA4-213ENST00000587988 NMIQ13287 307 aaPredicted RBP12.91□□□□□ -0.34
SMARCA4-213ENST00000587988 LRRFIP1Q32MZ4 808 aaKnown RBP12.91□□□□□ -0.34
SMARCA4-213ENST00000587988 MAP1SQ66K74 1059 aaPredicted RBP12.91□□□□□ -0.34
SMARCA4-213ENST00000587988 TMED8Q6PL24 325 aaPredicted RBP12.91□□□□□ -0.34
SMARCA4-213ENST00000587988 DLK2Q6UY11 383 aa12.91□□□□□ -0.34
SMARCA4-213ENST00000587988 LCORLQ8N3X6 602 aa12.91□□□□□ -0.34
SMARCA4-213ENST00000587988 NOL10Q9BSC4 688 aaKnown RBP12.91□□□□□ -0.34
SMARCA4-213ENST00000587988 ARMT1Q9H993 441 aa12.91□□□□□ -0.34
SMARCA4-213ENST00000587988 VEZTQ9HBM0 779 aa12.91□□□□□ -0.34
SMARCA4-213ENST00000587988 RFX7Q2KHR2 1363 aa12.91□□□□□ -0.34
SMARCA4-213ENST00000587988 WDHD1O75717 1129 aaPredicted RBP12.9□□□□□ -0.34
SMARCA4-213ENST00000587988 CCDC129Q6ZRS4 1044 aa12.9□□□□□ -0.34
SMARCA4-213ENST00000587988 TEX11Q8IYF3 940 aa12.9□□□□□ -0.34
SMARCA4-213ENST00000587988 DCPSQ96C86 337 aaKnown RBP12.9□□□□□ -0.34
SMARCA4-213ENST00000587988 DDX4Q9NQI0 724 aaKnown RBP12.9□□□□□ -0.34
SMARCA4-213ENST00000587988 FAM198AQ9UFP1 575 aa12.9□□□□□ -0.34
SMARCA4-213ENST00000587988 CDK5RAP2Q96SN8 1893 aa12.9□□□□□ -0.34
SMARCA4-213ENST00000587988 PITPNM2Q9BZ72 1349 aa12.89□□□□□ -0.35
SMARCA4-213ENST00000587988 ADM5C9JUS6 153 aa12.89□□□□□ -0.35
SMARCA4-213ENST00000587988 GPAA1O43292 621 aa12.89□□□□□ -0.35
SMARCA4-213ENST00000587988 PRKAB2O43741 272 aa12.89□□□□□ -0.35
SMARCA4-213ENST00000587988 CHMLP26374 656 aa12.89□□□□□ -0.35
SMARCA4-213ENST00000587988 TCP10Q12799 353 aa12.89□□□□□ -0.35
SMARCA4-213ENST00000587988 CWC27Q6UX04 472 aaKnown RBP12.89□□□□□ -0.35
SMARCA4-213ENST00000587988 USP48Q86UV5 1035 aa12.89□□□□□ -0.35
SMARCA4-213ENST00000587988 TICAM2Q86XR7 235 aa12.89□□□□□ -0.35
SMARCA4-213ENST00000587988 ZFPM1Q8IX07 1006 aa12.89□□□□□ -0.35
SMARCA4-213ENST00000587988 TGFBRAP1Q8WUH2 860 aa12.89□□□□□ -0.35
SMARCA4-213ENST00000587988 AIDAQ96BJ3 306 aa12.89□□□□□ -0.35
SMARCA4-213ENST00000587988 STRBPQ96SI9 672 aaKnown RBP12.89□□□□□ -0.35
SMARCA4-213ENST00000587988 IDI2Q9BXS1 227 aa12.89□□□□□ -0.35
SMARCA4-213ENST00000587988 GLIS2Q9BZE0 524 aaPredicted RBP12.89□□□□□ -0.35
SMARCA4-213ENST00000587988 IL25Q9H293 177 aa12.89□□□□□ -0.35
SMARCA4-213ENST00000587988 HELLSQ9NRZ9 838 aa12.89□□□□□ -0.35
SMARCA4-213ENST00000587988 CNTNAP1P78357 1384 aa12.89□□□□□ -0.35
SMARCA4-213ENST00000587988 PLCG2P16885 1265 aa12.88□□□□□ -0.35
SMARCA4-213ENST00000587988 FMR1Q06787 632 aaKnown RBP eCLIP12.88□□□□□ -0.351e-7■■□□□ 13.5
SMARCA4-213ENST00000587988 PICALMQ13492 652 aa12.88□□□□□ -0.35
SMARCA4-213ENST00000587988 MCMDC2Q4G0Z9 681 aa12.88□□□□□ -0.35
SMARCA4-213ENST00000587988 PRAMEF18Q5VWM3 479 aa12.88□□□□□ -0.35
SMARCA4-213ENST00000587988 CHADLQ6NUI6 762 aa12.88□□□□□ -0.35
SMARCA4-213ENST00000587988 KRT26Q7Z3Y9 468 aa12.88□□□□□ -0.35
SMARCA4-213ENST00000587988 ZNF589Q86UQ0 364 aaPredicted RBP12.88□□□□□ -0.35
SMARCA4-213ENST00000587988 APOBEC3FQ8IUX4 373 aaKnown RBP12.88□□□□□ -0.35
SMARCA4-213ENST00000587988 CDAN1Q8IWY9 1227 aa12.88□□□□□ -0.35
SMARCA4-213ENST00000587988 SDR42E1Q8WUS8 393 aa12.88□□□□□ -0.35
SMARCA4-213ENST00000587988 DIAPH3Q9NSV4 1193 aa12.88□□□□□ -0.35
SMARCA4-213ENST00000587988 TMOD2Q9NZR1 351 aa12.88□□□□□ -0.35
SMARCA4-213ENST00000587988 FOCADQ5VW36 1801 aa12.88□□□□□ -0.35
SMARCA4-213ENST00000587988 HIP1O00291 1037 aa12.87□□□□□ -0.35
SMARCA4-213ENST00000587988 TOMM70O94826 608 aa12.87□□□□□ -0.35
SMARCA4-213ENST00000587988 ITGBL1O95965 494 aaPredicted RBP12.87□□□□□ -0.35
SMARCA4-213ENST00000587988 RASA3Q14644 834 aa12.87□□□□□ -0.35
SMARCA4-213ENST00000587988 FKBP1CQ5VVH2 108 aa12.87□□□□□ -0.35
SMARCA4-213ENST00000587988 CDC37L1Q7L3B6 337 aa12.87□□□□□ -0.35
SMARCA4-213ENST00000587988 MAPKAPK5Q8IW41 473 aa12.87□□□□□ -0.35
SMARCA4-213ENST00000587988 SULF1Q8IWU6 871 aa12.87□□□□□ -0.35
SMARCA4-213ENST00000587988 CRNKL1Q9BZJ0 848 aaKnown RBP12.87□□□□□ -0.35
SMARCA4-213ENST00000587988 TMEM39BQ9GZU3 492 aa12.87□□□□□ -0.35
SMARCA4-213ENST00000587988 DEFB129Q9H1M3 183 aa12.87□□□□□ -0.35
SMARCA4-213ENST00000587988 SLC4A4Q9Y6R1 1079 aa12.87□□□□□ -0.35
SMARCA4-213ENST00000587988 FLT1P17948 1338 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms